Array 1 979974-981466 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081189.1 Salmonella enterica strain sg1722-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 979974 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 980035 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 980096 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 980157 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 980218 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 980279 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 980340 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 980401 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 980462 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 980523 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 980584 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 980645 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 980706 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 980767 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 980828 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 980889 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 980951 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 981012 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 981073 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 981134 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 981195 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 981256 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 981317 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 981378 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 981439 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 997598-999562 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081189.1 Salmonella enterica strain sg1722-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 997598 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 997659 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 997720 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 997781 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 997842 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 997903 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 997964 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 998026 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 998087 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 998148 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 998209 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 998270 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 998331 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 998392 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 998453 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998514 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998575 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 998636 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 998697 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 998758 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 998819 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 998881 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 998984 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 999045 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 999106 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 999167 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 999228 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 999289 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 999350 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 999411 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 999472 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 999533 29 96.6 0 A............................ | A [999559] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //