Array 1 171865-171537 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLLB01000007.1 Citrobacter koseri strain HAMBI_1287 JFDMDMML_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 171864 28 100.0 32 ............................ CGCCTTGAACCTCAATTCTTGTCCAGTTTCCA 171804 28 100.0 32 ............................ GCAGTATAAATATCAGCGGGACATGATACAGC 171744 28 100.0 32 ............................ ATAGCAGCGAGGCGCTCCAGTTCTCCGGCAGC 171684 28 100.0 32 ............................ ATGCTCGCGTACTGGTTCGTGGCGATATCGCC 171624 28 100.0 32 ............................ AAGTTGATCACCGTTGTTCGCCGTAGCGTTTC 171564 28 85.7 0 ....................T.C..T.T | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAACTGCATCACTGGCCCGGACTGAGCCTGGCTTCAGGTAAACATATCCACCGCTGGGAACTCTTTGGTCCACAGGGCGCGCGTGCTGAAGTTCACTTTACACCGCGTTTGATCACTACAGACATGCTGGCGCTGCGTGAAGCGGCCGTTGCGGGCGTCGGCCTCGTTCAGTTACCTGTTTTAATGGTGAAAGACCAACTGGCTGCGGGGGAGCTGGTTGCCTTGCTGGAAGGATGGGAACCCAGAAGAGAGGTGATTCATGCGGTATTCCCGTCCCGCCGTGGATTGCTGCCGTCCGTACGCGCACTGGTGGATTTTTTGACAGAAGAGTATGCGCGGATGGTGGAAGATTAAAACAGAGCGCAATATACCCCTTTTTATTTTATGTTACTAACTTATTGATTTTATTTTATATATACAACTTGGGTGAAAAAGGGTCTGACAGGAAGACGTTGCGTTTTTCTTCAATAAATCAACGTGATTGTCTGATATTATTCCT # Right flank : TGAATGTAGAAGGAAGGGACGCTGCGGGGAATAAAAATAACGTTAATTCGCATCAACGGTATTCATGCAGGAAAGGGACAACAAAAAGGCCGGATAAACCGACCTTTTTTTATCTTTACGCCACCCGGGCGTGAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAATTCTACGCGGAACATGGTATTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTTTAAATAAGTAAAGATTTGCGCGTTTAAAACGCAGCAAATCAGGTTTGGCGCATTACTCCGAAAAACACGGCAAAGCCGCACT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 184827-183174 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLLB01000007.1 Citrobacter koseri strain HAMBI_1287 JFDMDMML_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 184826 28 100.0 33 ............................ AAGAACGATGAACCTGTAAGTGATCGTGATGAG 184765 28 100.0 32 ............................ CAGCGCGCCACTCCCTTCACGGCACCACGAAA 184705 28 100.0 33 ............................ CTGAGCCACCGCTACGGTAAACCCCTGTCGGAT 184644 28 100.0 32 ............................ GCGACAGGTTCAGAACCTGCTGGGATGCGACT 184584 28 100.0 32 ............................ ACGTCATTTTGTTCAATCTCGATTTCCCTGAT 184524 28 100.0 32 ............................ GGGTATTATTAATGTGCTTGAGAGAGTTCCTT 184464 28 100.0 33 ............................ GCCGGGCGGCTGGCATTCATCAACCCGCTCACC 184403 28 100.0 32 ............................ TGGAAGCCGCAGGCAAATTCCCAAAACGCTGG 184343 28 100.0 33 ............................ CAATAGGCACGAGAACGGCGCACCATTCGATAT 184282 28 100.0 32 ............................ TCTAATGTGTGGACACAATGTGGACATTCCAC 184222 28 100.0 32 ............................ TTTGATGGTTTGCCCGCGCATATCAGGAATAA 184162 28 100.0 32 ............................ AGTACGTAGGTTCGTCTGAGTGGATGCCGGAA 184102 28 100.0 32 ............................ ACAGCCAGAAAATGGCATTTATGGAACGCTAT 184042 28 100.0 32 ............................ AGTGACTGCCCACGGAAACAATCATAACTTGA 183982 28 100.0 32 ............................ AGTTATCGCCCGACAGTTTGGCGCCAGCATCG 183922 28 100.0 32 ............................ TGGTAATTAGCACGTAATGCATTAGCCGAAGC 183862 28 100.0 32 ............................ TGAGGTGATATATCCGATTAATGGTTGGAAAT 183802 28 100.0 33 ............................ AGGTACAGAGTAAGTCGGCATCGGCCGGGCACA 183741 28 100.0 32 ............................ TTAAGGCGATACACGCAGCCGCCGATAGTTCC 183681 28 100.0 32 ............................ TGTCCCGGGGCAGTGGATTGCGTGCAGTAAAG 183621 28 100.0 32 ............................ CCACACCGAGCGGATTTTGCCAACAATGGCAG 183561 28 100.0 32 ............................ AGCGACAAGCCGACAGAAGATGATATTTGGGC 183501 28 100.0 32 ............................ CAAACGGGAAAGTCGATAAAATTATCGAGCTT 183441 28 100.0 32 ............................ GTATCGCCGACTGCGTCCCGATGCGGGAGAAA 183381 28 100.0 32 ............................ GCAACTCAGGATGATCCTTGTTCCGGGTTCAC 183321 28 100.0 32 ............................ AAGAATACGGCGCATCATCGGCGTGAAATCCG 183261 28 100.0 32 ............................ CGACGCGGAAGATCATAAAATCGCGTGCCGCT 183201 28 85.7 0 ......................ACC.C. | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGATCAGAAAGGCGTTTCCCTGGAAGTGAGTCAGGAAGCGCGTGACTGGCTGGCTGAGAAAGGCTATGACCGCGCGATGGGCGCACGTCCAATGACGCGCGTCGTCCAGGACAACCTGAAAAAACCGTTGGCAAACGAGCTGCTGTTCGGTTCGCTGGTTGGCGGCGGCCAGGTGACCGTTGCTCTGGATAAAGAGAAAAATGAGCTGACGTATGGCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCCGCGCATTAATCTCGTAACCGGTAAAATCTGAACGCCAGTCGCGTTCAGATAAACTCGCTAAAATCCGTAATCTCTTTTGAGGTTACGGATTTTTTTGCCGTCATGCCCCGGATACCTGGAAACCCTTTTTTTGAGTGTTTTTTTAACGCTATGATTTTTATGTGTTTATATTAGGTGGCGATAAAAGGGTATTTAATCATTTCGTTGATATTTTTCTTTATTAACACCATGATAGCGACGAACTGCTTCA # Right flank : CCACAAATGTAATTATTTATTTTGAAAGCTCTTTTGTTGATTTTTATCATTTCATCTGCCGGAGCCTCATCAGTACTATCGATAACACATAAAATGACGGGGTTTAAATAGATATGTCTGCAAATTCAATTATGCCTTCGGATTTAAAAACCATTCTGCACTCTAAACGCGCCAATATATATTATCTTGAAAAGTGCCGTGTGCAGGTAAATGGTGGGCGAGTTGAATACATTACGAGTGCAGGTAATGAATCATATTACTGGAATATTCCTGTCGCGAATACTACGGCAGTGATGCTGGGTATGGGCACGTCAGTGTCACAGGCGGCGATGCGGGAGTTTGCAAGGGCTGGCGTGATGGTTGGCTTCTGTGGCACTGATGGTACGCCGCTTTATTCCGCAAATGAAGTTGATATTGATGTGTCATGGCTGTCACCGCAAAGTGAATATCGACCGACTGAATATTTACAGCATTGGGTCTCTTTCTGGTTTAAAGAAGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //