Array 1 124-946 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCFR01000120.1 Lactobacillus helveticus strain IMAU60201 Scaffold120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 124 28 100.0 33 ............................ CTTTTCTAACACGCGTTCCCGAACATATGTTAG 185 28 100.0 33 ............................ TAACTGCAAAACACTCTGGGCAGGTTTTAATTG 246 28 100.0 33 ............................ CGATTAAAAAAGAAGCGAAGACCATCGAAGACA 307 28 100.0 33 ............................ TTAATTGCCTGCTCTGCTAGTGCTTCATTGAAG 368 28 100.0 33 ............................ TAGTCAACAATTACAACTGGCTTCTGGTCGGGA 429 28 100.0 34 ............................ TGACAATGATCCTCTAGCATATCGAGCATTCATA 491 28 100.0 33 ............................ TAGACGGTAATGAAGTACACGGTATAGCTAAAG 552 28 100.0 33 ............................ CAAAAATATCAATAGAAGGCATAAACTGGGTTG 613 28 100.0 34 ............................ CTTTTCTGGAAGTTTCCAAAATTTTTATCCATTA 675 28 100.0 33 ............................ TGTTAGGCGTGAAACTACAATTATATAAAAGCA 736 28 100.0 33 ............................ CCAGGAACAGCTCTTCCAGTTTCCCAGGCAGCT 797 28 100.0 33 ............................ CTACTGATTATTTGAACGGCTTAACCGATGATC 858 28 100.0 33 ............................ TAGGGTATAGTCTAAATCCCCAACCATTTTTGG 919 28 85.7 0 .......................TC.GA | ========== ====== ====== ====== ============================ ================================== ================== 14 28 99.0 33 GTTTTCTCCACGTAAGTGGAGGTGATCC # Left flank : TAATTTGGCTTATTGTCTAGAACGATTTAACTAGCACCACGCGTATTGTTGTATAAAATACAAACTGAATGAATTTCAGCTTTTTATTAATTAAAAATGGCTTAACGACGGGATTCTTTTAGGG # Right flank : AGGATCAGTCGTCTAACAGGGAAGACAGGCTTATTTGATATTAATAAGCAAGATATGGGTCCAATTCCCATCATCCTCAATATTTGAATAAAGTAAAAGCTCTTAGTTGTGAAAACTAATGGCTTTTTTGATGGATTAGTAATATTTTAGATCATCCTAAATTTTCTTTTATATAATAGGCTTGTATTGGGAGTAAAGGAGAAAATAACAATGTTATTGGCATTGGTTTGTTTAACATTTGCTGGTGTAAGTATTTCTACCGCTCAACCAGTTCAAGCCATAAGCAAGTATTCTGAAAAATGGCATACTATAAAAACTACTGAAAAAGTTTATGCCTACAAACCATATGTACCTCGTGGTGGTGCTATGTATCAAATGAAATTCATTCATAAAACACCGATCAAGAAAGGCACGTATCTAAGATTGATTCGTCTAAGTACTTCTTATCCATGGGAGATTATACGTGGCAAAAATCATTTGGCAATTTTAAGAAGAGATGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTCCACGTAAGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 4488-3300 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCFR01000032.1 Lactobacillus helveticus strain IMAU60201 Scaffold32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4487 29 96.6 32 ............................C GACACATATGTAAGTTTTGAATAGGAGCAAAG 4426 29 100.0 32 ............................. ACAAGCAATTTGATAATTCGTGATGATCGTTT 4365 29 100.0 32 ............................. ATTTCTAAAACAGTATTAGAAATACCAGCATC 4304 29 100.0 32 ............................. TTGCCACGTTAAAGTTGTCCGGGCTATATAGG 4243 29 96.6 32 ............................C CAACTAAGGACGTGACTGTGAATGGCAACTAG 4182 29 100.0 32 ............................. ACCATTTTGGTTATATGGAACTTTCCCGTTTT 4121 29 100.0 32 ............................. ACAAAACTTATATACTAATAATTTGGTTTATG 4060 29 100.0 32 ............................. CGACATATCACGTCCTTGGCGTTGCATTTCAG 3999 29 100.0 32 ............................. CTATATTGAATAAGATGCTTATCCGCCGGGGT 3938 29 96.6 32 ............................C GATATTGCAGAAAACAATCCGCAGAAATTAAA 3877 29 96.6 32 ............................C AGCAAAGTCTCTAGTTGCCATTCACAGTCACG 3816 29 96.6 32 ............................C TGGTATATTTACGGCTTTAGAAAATGCTATTG 3755 29 100.0 32 ............................. TATTTCTGGTCAAGTTAAGGTTAAAAACCATC 3694 29 100.0 32 ............................. GAAGCATGGTCAAAAAGTCGTAGATCATGGAA 3633 29 100.0 32 ............................. CATGCTAGTCCTGATGATTCTGGCAACATCCA 3572 29 100.0 32 ............................. CATGCTAGTCCTGATGATTCTGGCAACATCCA 3511 29 96.6 32 ............................C CTCACATTTACGCATACCGGTTGCGGCAAGAA 3450 29 100.0 32 ............................. TATTGAGCAACTTCGATAACGCGTTGCTTTTG 3389 29 100.0 32 ............................. CTTGGCTGGTCGGCTCATTCAATGTGGAATAG 3328 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATATATATCTAAAAGTAAATGTGAAAGATTTTATCGACTAATTAAAACTGATTATGAAATTCCAACGCATATTTCTAAAATTACGCAATTAACATCAGAGAAATTGAATCAAAGTGGTGTTGAATTATTTGATGCGCTTGAAGACTTAAAGAAGTTTTTAGCTGATAGATTAATAGTAGGTTATAATTTAAATTTTGATATTAATTTCCTGAATCGTGACTATCAAAAATATAATAATTCCCATATCTTGAATAATTTAAAGGATATATTGCCAATAATTAAGAATAAAAATAAGTTTATTGATAATTATAAATTAAATACAGTTCTTAAAAATTATGGTATAAAAAATGCTGAACCTCATAATGCTTTGTCAGATGCGTGTGCCACATTGGATTTAATTATTAAGCTGGTAGAGCAAGGCGGCTTTTAAAGATGATGAAAGTGATTAAAAATAGAGATTTAGTATTTTGAAAACGGCGATAGAATGGGATTTATTTACT # Right flank : GCAACCGCATCTTGGACTTTAGGTATGATATTGTATTTTCCACGTATGTGGAGGTGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGTAATTTCAAGAACTTCTTTACCCTCTTTGTGTATTCTCCACGTATGTGGAGGTGATCCTGTTCCGGATCCGCTGGAGTAATTGCAGAGCAGGTATTCTCCACGTATGTGGAGGTGATCCTGTTCCGGATCCGCTGGAGTAATTGCAGAGCAGGTATTCTCCACGTATGTGGAGGTGATCCCAAATAGAAGGAGAAAAGGACAACCGATAAGAGGTATTCTCCACGTATGTGGAGCAACCAAAAACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 15850-14295 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCFR01000032.1 Lactobacillus helveticus strain IMAU60201 Scaffold32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15849 29 96.6 32 ............................C GCAAAAAGGGTGTTTTGCACGGTAGCTCCTAG 15788 29 100.0 32 ............................. ATAGTTATGATTTGATGCTTCCCAATCGCAAA 15727 29 100.0 32 ............................. AATGCCAGCATTCAATTGGGAAAATGCTCCTA 15666 29 96.6 32 ............................C TAGTGATAGTATCAAAGCAGCATGCCAAAAAG 15605 29 96.6 32 ............................C CACCTCTCAATCTAAGCGAGTAATTCAAAAGG 15544 29 96.6 32 C............................ GCTTATTTGTGGAAGTTGAGTATTTTTTAGCA 15483 29 100.0 32 ............................. TCCTTGATTTCATTTTGCAAATCATAAGGTGG 15422 29 100.0 32 ............................. TTAGCTGGTACCCATTGAGTATCAGTACCTAG 15361 29 100.0 32 ............................. CCGACTGTTCTTTCTTACCTTGATAGGCTTAG 15300 29 100.0 32 ............................. GGCACTTCTTAGCTTCTTTAATCCGTCAGTAC 15239 29 100.0 32 ............................. AAATTTGGTTAGGCATTATTTTGGTGATCTAA 15178 29 100.0 32 ............................. AGTTGAGCCGTCTGGAATGATTACATCACTTT 15117 29 100.0 32 ............................. ACAGGACGCGGACGAACAATAGTCATAATTAC 15056 29 100.0 32 ............................. TGGTTGATACGGCTATGACTGACGACAGCTCG 14995 29 100.0 32 ............................. CCTTGTATTTTTCGTTTGTAAAGAGCCATTGA 14934 29 96.6 32 ............................C TAATTTTTGATAAATCATTATTGGTCACTCTG 14873 29 96.6 32 ............................C AGCTCACTCAACTAGACACACCGCAGGAAGTT 14812 29 100.0 32 ............................. TGATAGCTCTGTTCTATTAGAGTTGGATATTG 14751 29 96.6 32 ............................C GTCTACGAGTGGGCGCTCTTTTTATGGAACCG 14690 29 100.0 32 ............................. ATCATCACAGCCGAAAATATCCAAAGCTTTTT 14629 29 96.6 32 ............................C TGGTAAAACTGGCTTTATTAATCGCCCACCAA 14568 29 100.0 33 ............................. ATGGCGCATATATGACTGATGAAAAAGCTTTTG 14506 29 96.6 32 ............................C GGGGACAAAAAGGCACAAGCCCAATTGCAGCG 14445 29 96.6 32 ............................C AAACTACACCGGGAACGTTCACAAACTCTTAA 14384 29 100.0 32 ............................. GATGATCCAGATCTCGCAACAGATGAAGTATA 14323 29 93.1 0 ...........................TA | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.4 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TTGCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTTGAGTTAAAGCAGCATCATCCCTTATAGATAGTAGCATTGTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTAATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATTGCTAACAGCATCGGCTTGAACGTGATTAGTAGAAACAATTCCTGCACCGAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAAAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATGGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : AAAGCTTTAAAGTGCTATAAATAGTTCATATATGAAATAATATTTTACAAATTATGAGGAAATGAAAATGCAATTATCTAATAAGACTTTATCCTTATGGGGTAAGAAAAATGTTAATGATGACAATGAAAAAATGTGGTTACCATTAATTGCGCATTTAATTGATACAAAAAATGTGATCAATTGGCTATATAATCATTGAATCAATGATGGTCAAAGACATATTTTGCAACGGAATTTTGAAGATGAAGATATAGTTCAAAATTTAGTGAAGTTTTTGGGATATATACATGATATTGGAAAGGCAACACCTGCTTTTCAAATTAAACAGTCATATATCCATAATGAAGATTTAGATCAGAATTTAGTAGAAAAATTATTGCGAAATGGCTTTGATGGTCTAGATAATTCAAAAATTAAGAAAATTAATACAAGTAAGACGCCTCATGCATTAGCTGGAGAAGTTATTCTAGAAAACAACGGGTTAAATGAAAGTATAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //