Array 1 108233-109700 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGH01000001.1 Yersinia pseudotuberculosis strain 19-YE00056 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 108233 28 100.0 30 ............................ ACAGTGGTGTGGTGGTACAGATAGGGGAAG 108291 28 100.0 32 ............................ GCACTGACTTTAGTTATAGCGCGATAGCCGAC 108351 28 100.0 32 ............................ TGCTGAGATTCCAGTATTCTGAATTAATTTAC 108411 28 100.0 32 ............................ TCTAGTACGCCAATTTTGTGATTCTTTATAAT 108471 28 100.0 32 ............................ CTTCAAAATAATGTTAATGCTAGGCTAGAGGC 108531 28 100.0 32 ............................ CAGTTGAAATACATGTTCAAGGAAATGGTTTA 108591 28 100.0 32 ............................ AGACACAGGCGAAACCATATTCTATATGAATC 108651 28 100.0 32 ............................ CCTCTATGTTTGACTCACTACACTCTGAGGGG 108711 28 100.0 32 ............................ ATGATTTTCTAATTTTTCTTCAAACAAAGTAT 108771 28 100.0 33 ............................ CAATTGAAATAATGGTTACTGGCAACGGACAAG 108832 28 100.0 33 ............................ GGTTGTTCAGGGTAAATAAATCTCACCAGCCAT 108893 28 100.0 32 ............................ TGAGCGATGGAGTGCCGCAGCTACACAACAAC 108953 28 100.0 32 ............................ TTAACAGACTCAATAAACTGTAGAACGTTTTC 109013 28 100.0 32 ............................ AGTCTGGCGGCGCATTATCTGGTTTTATGTAT 109073 28 100.0 32 ............................ AATTTATTATAAGTGGAAATAATACTTGACTT 109133 28 100.0 32 ............................ TCAAGTACCTAGGCATTAAAGTAATTAATTCA 109193 28 100.0 32 ............................ AAGTAGCAAAAAGATTTTTAGTATAGATAAAT 109253 28 100.0 32 ............................ AGCTGTAGGTTCGTCTGCGTCTGTTATGGCCC 109313 28 100.0 32 ............................ ATCCAGGCATCAGACCCGACAGTTGTGACCAG 109373 28 100.0 32 ............................ AGCCCGCTGGCTTACGACCCGAAGGGCGGTGA 109433 28 100.0 32 ............................ TACTTCCCTGATCTGCGCCAACGGCTGTTTAT 109493 28 100.0 32 ............................ GAGCATTCCGCGCTCGTCACGCGCCCTTACTG 109553 28 100.0 32 ............................ GGTATCGACAAACAGGCACATATACAGTTGAT 109613 28 100.0 32 ............................ TTACACGCTGGACGGCCAGGGAGACGAGAGCT 109673 27 89.3 0 .....................CC.-... | T [109699] ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 60563-60056 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGH01000015.1 Yersinia pseudotuberculosis strain 19-YE00056 NODE_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 60562 28 100.0 32 ............................ TGAAACAATAGCAAACAATAATTCAGGTATTC 60502 28 100.0 32 ............................ TTATCAGGGTGAGGATAGACACGACCCCAAAA 60442 28 100.0 31 ............................ ATGCCACAAATGAGTTTGTTTCCATAGCAGG 60383 28 100.0 32 ............................ TGTAGCTGTAAATCCAACTGGCATTGGAGGAT 60323 28 100.0 32 ............................ ATAGTGCCGGGGCGATGACAAGAGCAGTGATC 60263 28 100.0 32 ............................ GAAAACGGAACATTACAATCCGGCGGATTACA 60203 28 100.0 32 ............................ CTATTGTGTTGAGCAACGGCGCGGAGCTGCAC 60143 28 100.0 32 ............................ GGTCAGACTATGCGCGATGGATTGATTAAAGT 60083 28 92.9 0 ........................T.G. | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CATTCAGGTTATATTTTATCAGGGATAATAGGTGAAATAGGGGGGAGGGGCTAATGGTAAAAAGCCTCTTATTGATCCAATATATAATAATTCAGATAAAACGCGCATTGATTAGGATGTTTCAGACATTCGCGTGGGAATTTTCTTACTTTCATCACAGGAACCTCATTAGAGCACGCCAATATTCTTTTTTAATGTACCTAATAACCTCATTTAGTTAATAATCCAATTGACCTGAACCCTAAAAACGAAGCTATGGCAGAGTCATGCCCTGAGAGCGTTTCAGGGCGTTGGTACAGCAGATGATAAAGATCACGATAATAACGCATGGGGATTCTTAGCCTATTCGCATCAGGGGAATCATTTTTTGACCCTATTTTTTTAGCTATGGCTAACTCATTGATTTTATATCCTGCTTACCGAGGGTTAAAAAAAATCATTTTTTACCCTTTGGCGAAAGAATTATTTTACAAACAGTCTGTTACCCGTATTATCTTACT # Right flank : GGGTCACTGTTTGTGCACCAGCGCGGCCCCGGCCTGATCCTCTTGCTGGTAGGCCAACGCCACGACCAACGACTGCACCAGACAGAGCGTGGCTGATTGAGATCGGAAGGCATCTACCTGAGCCTCTTTCACCACAAAACAGAGATCGCTGAACGTGGCGAGCGGGCTTATCTGGCTGTCAGTAATGACAATCTGCCGGGCACCCGCGCTAGCGGCTATTTCACTGACCATCACGGTCTCTTCGGCGTACGGAGAGAAACTGATAGAAACCACGATATCGCGTGCTTTAATGCCGTTCACCTGCTCACGTAACATCCCCCCGAGGCCATGGAGTTGCACCGGGCGACATTCCAAATGGCTGAGTGCGTAGGTCAGATAGGCGGCCACGCTGAACGAGCGGCGCAGGCCCACCACATAAATGGTATCGGCCTGAGCAAGTAGTTCCACCGCGCGTTGCAGCATCTCTGGTTCAGTACGTGCCGCCAACTGTTGTAGTGCCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2147-4759 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGH01000007.1 Yersinia pseudotuberculosis strain 19-YE00056 NODE_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2147 28 100.0 32 ............................ GATCCCCCCCCGACCTGACTGATAAGCAGCTT 2207 28 100.0 32 ............................ ATCCGAGATGACGTTAGTAACAGTGTCTCTGA 2267 28 100.0 32 ............................ AAAGAGAAGCCCCTCATTATGAATGATCGGTA 2327 28 100.0 32 ............................ AAACTACTATTAATTTATTAACTCAAAATGTC 2387 28 100.0 32 ............................ TCGTTGAAAGAACACATGTTGATGATGATTGG 2447 28 100.0 32 ............................ ACTAATGTTTATATATCTTTAATATCTGAGGA 2507 28 100.0 32 ............................ ACCATAAAATGTATGGTTATATGATTTTACCC 2567 28 100.0 32 ............................ TTGTAGCTTTAACACTAGCAGAACTACCGACG 2627 28 100.0 31 ............................ TGTAGACGCTTATGCTCAGGTTCTACTAACA 2686 28 96.4 32 C........................... AACACGTTGGATGAATCACAACAGTTAATTAT 2746 28 100.0 32 ............................ AGCCACGTTCTCCCACCGGTACGGCGATAAAT 2806 28 100.0 33 ............................ CCACAGTATCATTATTATGACCGATGCCGACGT 2867 28 100.0 32 ............................ CATATAAACCGGTTATTTCATAAAGATTTTTT 2927 28 96.4 32 A........................... ACCTCGTTCACCTGAGCGTTTGACTTCAATAT 2987 28 100.0 32 ............................ TATGTAGATGCTTTAAAAGGAGTGAAGAAAAC 3047 28 100.0 32 ............................ AACACGTTGGATGAATCACAACAGTTAATTAT 3107 28 100.0 32 ............................ AGCCACGTTCTCCCACCGGTACGGCGATAAAT 3167 28 100.0 33 ............................ CCACAGTATCATTATTATGACCGATGCCGACGT 3228 28 100.0 32 ............................ CATATAAACCGGTTATTTCATAAAGATTTTTT 3288 28 96.4 32 A........................... ACCTCGTTCACCTGAGCGTTTGACTTCAATAT 3348 28 100.0 32 ............................ TATGTAGATGCTTTAAAAGGAGTGAAGAAAAC 3408 28 100.0 32 ............................ AACACGTTGGATGAATCACAACAGTTAATTAT 3468 28 100.0 32 ............................ TTAAAAGTGATGCTAATTCAGGAAGTGCGGAT 3528 28 100.0 32 ............................ AGTCTGGCGGCGCATTATCTGGTTTTATGTAT 3588 28 100.0 31 ............................ ATATTAAACCACACGATTCAACTACAAAAAT 3648 28 100.0 31 ............................ AGACACAGGCGAAACCACATTCTATATGAAT 3708 28 100.0 33 ............................ AGCAGCAATGGGATGAAATTAATAATATTAAAA 3769 28 100.0 32 ............................ CGCTAGACGCTTCATTTTTCATTGTAACTCAA 3829 28 100.0 32 ............................ AAGTTAAACAGTATGTTGACGATGAAATAAGT 3889 28 100.0 32 ............................ GAAAATCACATTGCCGGCGTGGATGAACAAGG 3949 28 100.0 32 ............................ CTCCGGAGTCACAACCATCTCAGAACAGATGT 4009 28 100.0 34 ............................ CCAGATTTGATTGGCGTGGGTTACTACGTTGAAT 4071 28 100.0 32 ............................ AATTGACACTAGCACGTTACTTAATAGTCAAT 4132 28 100.0 31 ............................ ATAAGAAAAATTATGAAGAGAAAAACCACAT 4192 28 100.0 32 ............................ TTTAGATGCCCGATCTAATTCCTCTTGGGCTT 4252 28 100.0 32 ............................ GCATAGTTAAGGGGTAAGAGATGAAAACTGAA 4312 28 100.0 32 ............................ ACCCAACCTCAAAGCTGGATGACAAGCGCAAA 4372 28 100.0 32 ............................ AGTGGTGATTACGCAATGCAGCAAACATATAA 4432 28 100.0 32 ............................ GTGGAATGGCTATTGCTATCGCTCGAGAATAT 4492 28 100.0 32 ............................ TCGCGAACGCGCTCAGGTTCACGGAATGGCGA 4552 28 100.0 32 ............................ ATCTGCGCCAAAGAAAATGCCATTCAGATAAT 4612 28 96.4 32 .........T.................. AACTACTAGAAGCTTGCCCATCTTACCTTTTC 4672 28 100.0 32 ............................ ATCATGAAAGACATTGTTCGCCAGTCCCCTGA 4732 27 85.7 0 ...................-A.A.C... | T [4756] ========== ====== ====== ====== ============================ ================================== ================== 44 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGGTTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGCTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //