Array 1 120574-118741 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEFS010000011.1 Acinetobacter baumannii strain BA82 11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 120573 30 96.7 30 .............................A TAAAACGCGCAAAAAAATATAAGGGACGTA 120513 30 100.0 30 .............................. AAACTGATTTACAAGCTTGATCAGTAGGCC 120453 30 96.7 30 ............................A. CATGAAGCTTATTAAATGACTGACATGGCT 120393 30 93.3 30 ............................AA AGATTCTAGCCCCCTCAATTGAGAAGTTAT 120333 30 96.7 30 .............................A TTTAGAAAGCTTGGAAAATAAAGGTGACTG 120273 30 100.0 31 .............................. TGCCGATGCGTGCAAACATTTGCTCCGCTTC 120212 30 100.0 30 .............................. ATAGATGGCTTTAACTGACTCCCAGCCCAT 120152 30 96.7 30 .............................A TAAGAAAAATGCAAAAAAGGCATTTATTAG 120092 30 96.7 30 ............................A. ACACATGTTTTTCTAATAAGAATAAGACAA 120032 30 100.0 31 .............................. ACCAGATAGCAACTCTCTAGGTCAGATAGAC 119971 30 93.3 30 ............................CC AGACTTGATTTTTATCACCATTGAAGAGTT 119911 30 96.7 30 .............................C AGGTAATAAAAAACCGCCCGAAGGCGGTAT 119851 30 96.7 30 .............................C AAAACGTATGGGTTATTGATGCTCAAGATT 119791 30 96.7 30 .............................C GTTGCTACGCGCCACGGCGCACCCATCGTT 119731 30 100.0 30 .............................. GAATCGGCCGCTTTGCGTATAAACACCACC 119671 30 96.7 30 .............................A AAATCACATCAGGGAAGTGAAGGCGAGCTA 119611 30 93.3 30 ............................GA GAATGATTTAAATTGCATTAAGCCTTTAAA 119551 30 96.7 30 .............................G GAAGTCATGAATGTAGGTGTTGAGGATGGC 119491 30 93.3 30 ............................AA TAGAATTAAAACCACGTTGATAATATAGGT 119431 30 93.3 30 ............................GA ATTGCACTTGCTAAGCCAATAATGCCAACT 119371 30 93.3 30 ............................GA CCCATAAATCAAACAAGCCAACATAATTGA 119311 30 100.0 30 .............................. CCTCAACTGACATTTCCAAATAGTAGAGGC 119251 30 96.7 30 ............................A. AAAGCGCACAACCCATTGATTTGTATTTTT 119191 30 93.3 30 ............................AG CAAATAGATCAACTGGTGCGCCCTGTGAAT 119131 30 93.3 30 ............................GA GATTCAAGTTTCACCGGATGGCACAAGTAA 119071 30 96.7 31 ............................G. AAAAAAGAGCATTTCCAGCAAAAATTGACGA 119010 30 100.0 30 .............................. TAAAGCTAAATGAGGGTTAAACCTAAGAAA 118950 30 90.0 30 .......T....................AA CGTGAACAATTGTTTTAGCTTTGAACATTA 118890 30 90.0 30 .............C...T..........G. TACTGGGTTGCGGAATATATTCGCAATTAT 118830 30 86.7 30 A......A.........T..........A. TTTGATCTTTACTTATTCTCGCTTCAAACA 118770 30 73.3 0 .......A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 31 30 95.1 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : TACCAAACCAATCAGCAATGGAAAAACCACC # Right flank : AAGATAAACAATAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTAAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGTAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAACC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.30, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 138630-139678 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEFS010000007.1 Acinetobacter baumannii strain BA82 7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 138630 30 96.7 31 .............................A ATAATCATCATATACCCCCTTGTCAGAGTGT 138691 30 93.3 30 ............................TT TAGCTTTAAAAACTCTTCGCGAGATTAAAT 138751 30 93.3 30 ............................TT TGGCTGCAAGCGGAACCATAATCCATGCAG 138811 30 100.0 30 .............................. TCGGCACAGGTAGCAGTTGAGCAGTCATCG 138871 30 93.3 30 ............................GA GTTCTTTCATAACGTAGGCTTTAATGCCTG 138931 30 96.7 30 .............................A CGTTTCCGCAAATCTGCGAAATACTCGTTG 138991 30 96.7 30 .............................A TATAGTGGCATCTTCGAGAGTTAAAGGCGG 139051 30 96.7 30 .............................T CAGAATTTTGTTTACAAGTTCTAAGCGGGA 139111 30 100.0 30 .............................. TTTGAACATCTAATAATTGAGCTGTAATAC 139171 30 93.3 30 ............................GC CTCCAATTGATCCAATTGATCAACCTCCAT 139231 30 96.7 30 .............................T ATGGTGGTTGTTATAAACCGCCTAATGATA 139291 30 96.7 30 .............................T TAGAAGACGTGGACTCCCCCAACCTTTCAA 139351 30 93.3 30 ............................TT TGCGCTCTTGCGGTTATTATCAAAGACCTC 139411 30 100.0 30 .............................. CATGTGCTAAATCAGGGAAAAGAAAAGCCA 139471 30 93.3 30 ............................TA ATTATAATCGCAATAGCTTCAATACTCCTA 139531 30 100.0 30 .............................. TGCGTGAACATTATTCTTTCTGCATCAGCT 139591 30 96.7 30 ............................C. GTACGTTCAACGGTCAGCAGATTTGTGTTA 139651 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== =============================== ================== 18 30 96.1 30 GTTCATGGCGGCATACGCCATTTAGAAAAG # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : | # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //