Array 1 19299-18207 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NVZQ01000041.1 Neisseria meningitidis strain MRSN431006 MRSN431006_contig00041, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     19298	    36	  97.2	    30	........G...........................	GTTTCTTCCCATATACTGCTGTTCAAACCG	
     19232	    36	 100.0	    30	....................................	CTTCCGTGAGATACATTTCCCAATCTTCTT	
     19166	    36	 100.0	    30	....................................	TGATTTGCTCGACAGGTGAATAGCCATAAA	
     19100	    36	 100.0	    30	....................................	AATTTAATACGGCGACCATCTCGTGCCAAG	
     19034	    36	 100.0	    30	....................................	TCATCAATCGCCCACTCAAACCCAAGCATA	
     18968	    36	 100.0	    30	....................................	CCGCAAAGCAGCCGAAAAAGCCGACAGGAA	
     18902	    36	 100.0	    30	....................................	TGACAAATAAAGCACGATTGTTGCAAAAGG	
     18836	    36	 100.0	    30	....................................	CCAACGGATAAAATTACGCCCAAGCACCTG	
     18770	    36	 100.0	    30	....................................	GTATTGAGCGTCAAGTACTCGCCATTCGAG	
     18704	    36	 100.0	    30	....................................	TGAAGGTTCGATAATTCGACCTGAAAAACG	
     18638	    36	 100.0	    30	....................................	TCACTCTAAAAATCCGATTCTACCACCGCT	
     18572	    36	 100.0	    30	....................................	TTGGCTCGTCTGCTGCCGTCAATCGTGCGC	
     18506	    36	 100.0	    30	....................................	TAGATTGCCTCATATACGCCGAGCGGGTAG	
     18440	    36	 100.0	    30	....................................	CAGGTCGTGCTGGAGCAGGCCGACGATTTT	
     18374	    36	 100.0	    30	....................................	CATACAGTTCATCTTCACCTGCAATCAGGG	
     18308	    36	 100.0	    30	....................................	TCTGCGGATTCGTACAAGTCATAAACTTTT	
     18242	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	  99.8	    30	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.68,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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