Array 1 40215-36766 **** Predicted by CRISPRDetect 2.4 *** >NZ_QECP01000021.1 Vibrio cholerae strain OYP2A04 Vc_OYP2A04_Contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40214 28 96.4 32 ...........C................ ATCATCACGAACTCTTGAGCGCACCAGTCAGG 40154 28 96.4 32 ...........C................ ACAAGTAAACACTGGCGTACATTGCAAGGGAT 40094 28 96.4 32 ...........C................ GAGTTGGGCGTAAATGCTGAGCCGAAATACTC 40034 28 96.4 32 ...........C................ ATTCTAGCTGCTGTTCTCTTTTTATCGTTCTA 39974 28 96.4 32 ...........C................ GTTCTTTGCTGGTGGCCTTTGATGGACTTAAA 39914 28 96.4 31 ...........C................ TTTGATATGTTCGGGTTCGAGGGCGTATCAC 39855 28 96.4 32 ...........C................ AGTAACCGCAAAAGCAAAGTTGAACTGCTGCC 39795 28 96.4 32 ...........C................ TTTAGGATTTTCTCCTCCAGTTCTGCCAATTG 39735 28 96.4 32 ...........C................ AACAGCCAGTTCGCAGATCATTGCTACGCCAT 39675 28 96.4 32 ...........C................ GTAAGCATCAAGGCACGAATCAATGATTGACT 39615 28 96.4 32 ...........C................ TATTAGCGGCTCGAATTCTATCCCATGCTCTT 39555 28 96.4 32 ...........C................ TTCCACAGGGTCAGTGGTTTCAAACTGGTAAA 39495 28 96.4 32 ...........C................ ATAGTAGGGGCTTATCCGCCTTGCGCCAGAAA 39435 28 96.4 32 ...........C................ CGGTCATGAGCGAGGCAACCGCTATTCCAATG 39375 28 96.4 32 ...........C................ AGCAGAAACCGTGATTGCTTGGCTATCGACTC 39315 28 96.4 32 ...........C................ GAATAGGTGCCGTGAGGATAGTGGTTCTGAAA 39255 28 96.4 32 ...........C................ ATGACTAGAGATGTATTCGTTTCTAAAATCTT 39195 28 96.4 32 ...........C................ GCTTGTCGGCTCCACGCCGTGTAATTTTTCAA 39135 28 96.4 32 ...........C................ TTCAGCCTCTTCAATGGCCGTGTATAGACGCA 39075 28 96.4 32 ...........C................ TGGTCAAAGATGGTAACGCCTATGTAATCAAG 39015 28 96.4 32 ...........C................ ACGTTACTCAAGTCCGCGCGTCAGTTACTCCT 38955 28 96.4 32 ...........C................ ATCAATCCACAGCTTCAGGTAGGTAACTTCAA 38895 28 100.0 32 ............................ GTAATGGCCGTGCATTGAATAGAATTCAAGTA 38835 28 100.0 32 ............................ CCCCCGTGGGCAGTGAAGCTGTGGTAATGGCG 38775 28 100.0 32 ............................ ACTCTCGCCTGACGTATTGGAAACGAAAATAA 38715 28 100.0 32 ............................ AGCAACGCAAACAATAACAACGGAGCAGGTCA 38655 28 100.0 32 ............................ TTCTTGTAGTAATCAATGGTTAGCGGTGAGCT 38595 28 100.0 32 ............................ AGCAGAAAAGGAGGCAATCAGTTCAGCGAAAG 38535 28 100.0 32 ............................ GCTTAGTGGTCACGATTGACTCACCAGCCAGT 38475 28 100.0 32 ............................ CCAAGAACTCACGATTACAGCAATAAACACCA 38415 28 100.0 32 ............................ GTTACTAGGGCGCGGCCTACCATAGAATAAAT 38355 28 100.0 32 ............................ TCTTGAACGGTAGACGCTACCACGCGGCGTTT 38295 28 100.0 33 ............................ ACATAAGCGTAAGATCCTGCTGGGATGTTGAAT 38234 28 100.0 32 ............................ TTGCGTTTCAAGTCATCCAATTGGAATTGAAC 38174 28 100.0 32 ............................ ATTGTAAGCATCGTCAGCCGTAAGCTTTACAA 38114 28 100.0 32 ............................ ATTTTTGCGGTGAGCAACACGGTGAAGATTTT 38054 28 100.0 32 ............................ AAGAGTGCGCTTAATAAGAGCAAGTCGAGCTC 37994 28 100.0 32 ............................ TATAAACGGACAGCAGATTTTTATGCTGAATA 37934 28 100.0 32 ............................ AAAATCGATGCGTCCCACCCACACCACCAAAA 37874 28 100.0 32 ............................ GTGTTTAACGACCTGACCGGTGCTGTTGTGCC 37814 28 100.0 32 ............................ CAATAGAGCTGCATCCTGGTCATGCTACATTT 37754 28 100.0 32 ............................ GTCCACCAGCATAACTCGTGAAGTGATGGTTT 37694 28 100.0 33 ............................ ATACGGCTAGAGCTTGGCGATATCGAGTGCGAT 37633 28 100.0 32 ............................ AGACGGCCATTCCACTGCAGTTTGAAAAGTAC 37573 28 100.0 32 ............................ TAGGAGAATGACATGACATTAGGTACAGAATC 37513 28 100.0 32 ............................ AAGAGTCGCTTGAACCATCAATTTTGTAATTG 37453 28 100.0 32 ............................ CCAATATCGTACCAGAGCAAAGTTCCTTGAAG 37393 28 100.0 32 ............................ TTCGAGCGGCTTGCCCGTTTGCGCGTTCATGC 37333 28 100.0 32 ............................ TTTACCACTCGCAAAAAGATTCTGATTACCAA 37273 28 100.0 32 ............................ TTTCCATCCAGTTGCAAGCTCAAACTGCTTTT 37213 28 100.0 32 ............................ AGTATAGCCAGTAGGGAACTCTGAGACTGCAA 37153 28 100.0 32 ............................ AATCTCTAACAGCGTTCAGGTAAGTCGGGGCT 37093 28 100.0 32 ............................ GTCCGGGGTTCGGTAGTAAGTCGACCCGATGT 37033 28 100.0 32 ............................ ATCAAATCTTTTATCATTTGCTAGTACGAACA 36973 28 96.4 32 .................T.......... AATTGGGGGTAATGGGCTAGTAGGGTCATTGG 36913 28 100.0 32 ............................ TTTTTCTCATAAGTGCGGATGTAGCGTTCAGC 36853 28 96.4 32 ...........C................ GCACTGGTTGCAGTGGAATTGCAGCTCGTGCT 36793 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================= ================== 58 28 98.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTGACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGCTTGAGTAGCAAAGCGAATGGACAGTCAATATCGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAGATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAAAGTAATGAGCTATTGGATTACATCAGTTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCTCGCTCCACCAGCACATCATTGGTTTTCTGCGCTCAAGGTAGTCAGTGCGGTTATAGGCACTGCGGACCTGATTATC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 306995-309666 **** Predicted by CRISPRDetect 2.4 *** >NZ_QECP01000008.1 Vibrio cholerae strain OYP2A04 Vc_OYP2A04_Contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 306995 28 100.0 32 ............................ TTAAAGCCTTCGTGCCAGGTGCAGAAGGCGCA 307055 28 100.0 32 ............................ CGCTGTCCATGCCTGTTTGCCGTTAAGCTGGG 307115 28 100.0 32 ............................ ACCACCGCCAGCCGCTTTGTACTCGTCAAACG 307175 28 100.0 33 ............................ TTCCGGTACATAATCGGGCAGAGCCTTTTTAAT 307236 28 100.0 32 ............................ TGCTCGCATCACTCGCACACCTTTTCTGCCCG 307296 28 100.0 32 ............................ TCATCGCCCGCGCCGTAGTTCGCTAATGACTG 307356 28 100.0 32 ............................ GTTTTGCGTCATCGAGCTGTAGAAGGCTGATC 307416 28 100.0 32 ............................ TCAGCAAACCCTCAAGCGGTCGCAAAAGCGTA 307476 28 100.0 32 ............................ AAGCGCAGGCGGTCAATGCGCTGCTCAGTGGT 307536 28 100.0 32 ............................ ACTGGTGCAGCATTGTTGGTAAAGCCCGTTTC 307596 28 100.0 32 ............................ GACACCACTTTTCAAGCCCCAGCTCAGGACAA 307656 28 100.0 32 ............................ GCAACAATGGCCTCCGACATCAAACGGTAGTG 307716 28 100.0 32 ............................ TTTGGTCACGTTGCGGTTTATTGTTCCGTCGG 307776 28 100.0 32 ............................ AGCACAATAAAACTCACAATGCAAAATCCGAT 307836 28 100.0 32 ............................ AAAAGCACTGATTGAGCCGACAATGCCGACCT 307896 28 100.0 32 ............................ ACTCAGCAAAAAAGCTTACTGGCAGAGCAAGA 307956 28 100.0 32 ............................ TCCACCCAGAATCTACTTTTTTCACCCTGACC 308016 28 100.0 33 ............................ GTCTGAATTCTTTAGCAGGTAATCGAGCTTTGT 308077 28 100.0 32 ............................ CAAGACGATAATCTGGAACACGCATCAGGTGT 308137 28 100.0 32 ............................ ACTAACAATACTTTCTTCAAATACACGAGTTA 308197 28 100.0 32 ............................ TTTTTGGACAACAATTCTAGTTATTGTTTTAG 308257 28 100.0 32 ............................ CGTCAAAAAAGTGATTCTTGGCGCGGCTCTAA 308317 28 100.0 32 ............................ GCAGATTCCATTGCGCGGTCGATGCGCTCTTG 308377 28 100.0 32 ............................ ATTACCGCCGCCAGAGTCAGGAAGTGGTAAAT 308437 28 100.0 32 ............................ ATGATTCCTTGATACATGCGTACTTTGCCCAT 308497 28 100.0 32 ............................ ACCAGTACAGAGCGAAAGGCCGTCAGTGGTTC 308557 28 100.0 32 ............................ TTTGTCAGTATATGCTTTGCGTTTGGTCTGTA 308617 28 100.0 33 ............................ AGTATTGTAAAGAGGAGCAAACTTGACGTTAGT 308678 28 100.0 32 ............................ GTATTAGGTCTACCCTCTACATGACTGTATTT 308738 28 100.0 32 ............................ ATGATTCATCCCCATTGATTGTAAAACCACCA 308798 28 100.0 32 ............................ TTGACGTCAGGTTTGATAACACTGCTGATAGT 308858 28 100.0 32 ............................ TCAAAAGCATCCAGTAAATGACCAAGCTTACC 308918 28 100.0 32 ............................ TTCAAATGATTGACCTGTCCGTGTAATGAATC 308978 28 100.0 32 ............................ TGTCCTCATGGTTCGGGATGTAGTAGCCGTTT 309038 28 100.0 32 ............................ CTAGGTCGATATTCGCGGCGCGGTATTCCGAC 309098 28 100.0 32 ............................ ATCAATACCAACCCCATCTACGATAGTCCACT 309158 28 100.0 32 ............................ ACCAGCCCCAGCGCGTTAACAAGTGTATAGCG 309218 28 96.4 32 ...........G................ CAAAATAGCAGGAGGCTCTGCATTTATAAGGT 309278 28 96.4 32 ...........G................ TAAAGCGCACCATCGCGCTCTAGTTTTTCTCT 309338 28 96.4 32 ...........G................ TGAGTCTTTAGCGGGAGTGCCAGGCAAGAAAG 309398 28 100.0 32 ............................ TGGTGACTCAATGCCGTTATATAGAAAAAATC 309458 28 100.0 32 ............................ TTCAAGCAGTGGGATTTGTGTGCAGCGACACG 309518 28 100.0 32 ............................ GGTCTCTTTGAAGTCATTTGGTTGACCAGAGA 309578 28 100.0 32 ............................ ACGATAGTACCAAGGTCACGCATGTTGCTGTT 309638 28 92.9 0 ......................G.A... | T [309658] ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCAGCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGCCGTAATTTAAGTGCTGCGAAGCTGCGCCGTTTAATTGCACGAGGGAGTATAAATAAAGAAGGTGAGCAGCGTTATAAAAAGAAGATGCTGAATCAGAGTATTAAAGGTCCATATCTTGACTTACTCAGTAGCTCGACAGGACAAAAATATCGTAAATTCTTCGAATTTGGGGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTCAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCCTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : ATCCTTATATATCTTATGGTTGAAGCTATCAAAGGTTGAGGGTTATATAAATGACAGTTTACTTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAATTGTGGTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACCAAAATCGACCATTAATGCCTCTACGGATATGAGTCAGTCTGCCTTTTTACCGAAAGGCTTTCAGATTGAAGCCCCTAAAGCGACGCAACGTAACTACGATGTGACGTTAGGGGATACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGCTCACTGGCCGGCCTCGGTGAACTTTCGGAGAACTTCCTTGGTGTGGGTGAGAGCTTTCGAGATTTGATGTCGTCTGGCTCTGATTATCTGCAAGAGAGTATGACTCAAGATGGCCGTGCCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //