Array 1 302087-300858 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCW01000001.1 Aggregatibacter segnis strain HK_296 NODE_1_length_410665_cov_63.2352, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 302086 28 100.0 32 ............................ ACATCCGAAAAATGGCAGGACAAACAAACGGG 302026 28 100.0 32 ............................ TTACATCAGGATCCTGTCCTAGATTACCCACA 301966 28 100.0 32 ............................ ACGCCGTCAGGGCAACGAGTTAGATCGTCTAG 301906 28 100.0 32 ............................ GCCCGTGTTGGTCGGGATAATGCCGCCTAAGC 301846 28 100.0 32 ............................ TTCCGGTTTCGTTTGGGCGGAAAAATGGCTAT 301786 28 100.0 33 ............................ TTTTAATTCAACGTCGAAATATTGCCGCGCCAT 301725 28 100.0 32 ............................ CTTTATCAAAAAGGAAATGCAGGTATCTCAAC 301665 28 100.0 32 ............................ TACAACACAGCGGAAAAACTGCGTCAACAAAG 301605 28 100.0 32 ............................ ATAAAAAATCCATACAGCTCTAATATGTCATC 301545 28 100.0 32 ............................ ACTTTTCAATCCAATCCTTTTTGAGTTCATCT 301485 28 100.0 32 ............................ TAATGCGTTTGTTGATGAATTGATTGCTGATT 301425 28 100.0 32 ............................ AAAGAGTATTACCCACACACTAACATTGAGAT 301365 28 100.0 32 ............................ ATAAAAAAAGGCTCAAAAGGCAGTCAAATTTT 301305 28 100.0 32 ............................ ACAATGCCGTTTTTCTTACGCATTGTTTTAAG 301245 28 100.0 32 ............................ AGTTACCGCACTTAACTGCGCTTTTTGGTTTT 301185 28 100.0 32 ............................ ACTTGCGAACGCGCTTGCCGTTTTGGTAAAAC 301125 28 100.0 32 ............................ CAAGTAAATAACTACCGCCTCTAGCTTTTCCG 301065 28 100.0 32 ............................ ATCAAAACACAAGCTATTGGCGGTGGAAGAAC 301005 28 100.0 32 ............................ AACATCTGCATTCCGTTCCACGCCACGATCGC 300945 28 100.0 32 ............................ AAAAGCGCTTACAGGGATTGAATAGAGAAACA 300885 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGTTGGCACGTCGTAACGATGAAAACCCGGAAGTCACCGATCGCTTTGAACTCTTCATCGGTGGACGTGAAATCGGTAACGGATTCTCCGAGCTAAACGATGCGGAAGATCAAAATGAACGCTTTGACGCTCAAGTGGCGGCCAAAGAAGCCGGCGATGACGAAGCGATGTTCAAAGACGAAGATTTCGTTGTCGCCCTTGAACACGGCTTACCGCCAACAGCAGGTGAAGGCTTAGGTATCGATCGTCTCGCCATGCTTTACGCCAACGCCCCATCCATCCGCGATGTGATTTTATTCCCGGCAATGCGTCAGAAATAATCAAAATCAAATCATCCAAAAAAGGAAGTCATTCGACTTCCTTTTTATTTACCCTTTATTTTTACAGTTTAATCCCTCCTTCAAAATCAATGATTTAAGCACGCAAGATATAAAAAGGATTTTATTGCCTAAATATGTCTATAAGCTTGGTACATCAGGTATTTTCAATTAGAATGTCTA # Right flank : TTACAAACTGATAGAGGTTTGTTGCAATAAAGCTTCACTGCCGAATAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCACTGCCGAATAGGCAGCTTAGAAATTACAAACTGATAGAGGTTTGTTGCAATAAAGCTTCACTGCCGAATAGGCAGCTTAGAAACAAACTGTTAAGCCCAAGTCCTCGCACATATACTTCACTGCCGAATAGGCAGCTTAGAAAAAAATCAGGAAGATTTAAAACCAATATCCATGCTTCACTGCCGAATAGGCAGCTTAGAAATAAGGAAGAAATATGACAGATAAAGCTAAGAGCTTCACTGCCGAATAGGCAGCTTAGAAATTGTGAAATTTTTCTAAAAATGCCGAGTTATTCTTCACTGCCGAATAGGCAGCTTAGAAATTACCGCCGGAAAGGCAACCTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 359374-360332 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCW01000001.1 Aggregatibacter segnis strain HK_296 NODE_1_length_410665_cov_63.2352, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 359374 32 100.0 34 ................................ TCAACTCGCTGGAGTAGTTAATGCCCTATCAAAC 359440 32 100.0 35 ................................ GTTTGAAATCCTTACATATTTTGCTTGCTCCGGCA 359507 32 100.0 35 ................................ TACTGATCTGTCATTAGTTTGATTCTGGGCGATCG 359574 32 100.0 34 ................................ AGTTAAAATCACATCATCATCAATCTGTGATGAA 359640 32 100.0 34 ................................ AGCAATCGAGTCTTTTGAAATAACACTAATAGGA 359706 32 100.0 35 ................................ GTCGATAAAAAAATCGAAGAAATCAAAAAAGCGGT 359773 32 100.0 34 ................................ TACTGTTGCAAAATAAGCCACAAGCGCATTTTTA 359839 32 100.0 35 ................................ TAAATAAGGCGGATTCTCTCCGCCTGTTCGCTTGT 359906 32 100.0 34 ................................ TGCTCACCCGAAGAGATTGCTGCTCTCTTCTCCA 359972 32 100.0 34 ................................ AACAAAGCACAACTCACTGACTAACAGTACATTG 360038 32 100.0 34 ................................ TAGTCAAAACGTATTGCAATGTACCATTTCTATA 360104 32 100.0 34 ................................ CTGATTTTTAGTATTACAAACACAGAGAAATCGA 360170 32 100.0 33 ................................ TAGATACTCTAATGATTAGAATAAATACTGTAA 360235 32 93.8 34 ......A........T................ AGAAAGTGAACATACAAAAAACAATATTAAAAAC 360301 32 87.5 0 .................A........C..T.T | ========== ====== ====== ====== ================================ =================================== ================== 15 32 98.8 34 GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TTGATGAGATAAGCTATGTTAATGCTGATTACTTATGATATTTCTTTTGACGATCCAAACGGGCAAGCACGATTGCGCCGCATAGCAAAACATTGCTTAGATTACGGCGTGCGGGCGCAATATTCGGTATTTGAATGCGATGTCACGCCTGACCAATTGGTTATGTTGAAAAACAAACTGTTGGAAACCTACGACCCTACATGTGACAGCCTACGCTTTTATCATTTAGGCAGTAAATGGCGTAATAAAGTGGAACATCATGGGGCAAAACCGGCAGTGGATGTATTTAAAGACGTGCTTGTCATTTAGCTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCTTTATTTTCTTTAACAATCTGGATAAGTTAATCTATTTGTATAACGGTGATGCGATCGTTATACTGACTAAACTCCTTATCATAAAATCAGTTAGCGAAATGCAGTGTTTAATCCGCTGATTTTTCTTGCTTTTTTATGTAGGGA # Right flank : TATTACAATCCCCTTGCCCTTCCCCTACAAAATAGATAGACTGAACTCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATCATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAACGAGAAAATCATACTTCCTTTCTTTTTCTCCACTTCTCTTCATTCGTCATTATTGCTGATTATCTTTTTTCATTAAAAAGGAACAATGATGCAATATGGTTTTTGTCGTTCTGTGCCGGTAAATGGCGGAGGGCGTTATGAGTAAAGTCGCGCAAGCGTTGACCATTGCCGGTTCGGATAGCGGTGGTGGCGCCGGAATTCAGGCAGATTTAAAAACATTTCAAATGCGTGGTGTGTTTGGTACCTCGGTGATTACGGCTGTCACGGCGCAAAACACCTTAGGCGTCTTTGATATTCACACCATCCCCCTTCAAACCATTCAAAGCCAGCTGAAAGCGATTGCTGATGATTTCACGATTAGCGCCTTTAAAATCGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //