Array 1 2-576 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLEK010000024.1 Pseudonocardia sp. ICBG1034 tig00000900, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ===================================== ================== 2 25 100.0 36 ......................... TCCCACGAACGTCTGCCGGGCCGGCGCCGCGGCGTT 63 25 92.0 37 ......................GT. GTCCCGGGGTCTACCAGGGCCACGTCGTGGTGGTGCC 125 25 100.0 36 ......................... TCCCGAGGTCCGTCCGCGCCTGGTCGAGGCCATCGC 186 25 96.0 36 ...A..................... TCCCACGATCGACAGGATCGGTGGCCCCCACGCGGA 247 25 100.0 37 ......................... TCCCGTCATGCGCACCCCGCTCGGCTCGATCGTGGTG 309 25 96.0 36 ........T................ CCCCCGCGCGACGTAGCGGGCGATGTGGTCGCCGCC 370 25 100.0 36 ......................... TCCCGTCACCCTGGACCTGTCGAACCCGACCGACCA 431 25 100.0 35 ......................... TCCCTCCAGGTCGAGCTCGGCGGTCGCCGGGTGAG 491 25 96.0 36 ...................T..... TCCCGCCCTGCAGGCGGCGCAGCAGGCGCAGACGGA 552 25 96.0 0 ...................T..... | ========== ====== ====== ====== ========================= ===================================== ================== 10 25 97.6 36 GTCGTCCCCGCGCCCGCGGGGGTGG # Left flank : GG # Right flank : GTCCCGTGCGCAGGAGTGTGCGCACAGCGCCGGCCTCGGTCGCGATCAGGCCGCCGGCCGCGACGTCCCATCGACGGCGTCGTCCAGGCTGGCGTGGAACGTAGGCATCGTGTGAGCCGGTTGCTGCCGAACCGGACACCGCGGTAGCTTCTGGAGACCGACCTACCTGATCCGCAGGGGAGTCAGCGCGCTATCGCGCGTCTCCAGCCAGGAGGTCGCACCCATGAACGCCGACCAGCCCGACCTGTGGCGCTCCCAGGGCAGCCCCACGCCGATTGTGCTGTGGGACATGCTTGACGGTCCGATGCCGCGAGGGCTTCTCGGTGTCGGTGACCCGAACGTCCACCTCGTCGAGGACCGGTGGACCCTGTTCGTCGGCGGCTTCACCACCACGTTCCGCAACCGCCTGTTCCGCGCGCACCTGGTCGACGAGGCGACCGGCCCCGGCGGTCCATGGCGGCTCGACCGCGACCCTCGGGGCCGGGCCCGACCGCTGGCCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTGG # Alternate repeat : GTCGTCCCCGCGCCCGCGGTGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 188011-185358 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLEK010000024.1 Pseudonocardia sp. ICBG1034 tig00000900, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 188010 29 100.0 32 ............................. GAGAGGTGACCTCCGGTGACCACCAGCACCGC 187949 29 100.0 32 ............................. GACGAGCCCGAGGCCGCGCAGGGCGGCGGGCC 187888 29 100.0 32 ............................. TGAGCCTGTCCCACCTGAGCTAGCAAGAACCC 187827 29 96.6 32 ............................T ACTGGGCGCGCGTGGTGGACGTGCAGGTCATC 187766 29 100.0 32 ............................. GTCCGATCCCACGACCGGAACATGGTGTTGCG 187705 29 100.0 32 ............................. TTGTTGAACCCCTCGTGCCGGCCGGAGGCGAC 187644 29 100.0 32 ............................. CCGGCCGACCCGCACCTGTGCCGGCAGCTCCG 187583 29 100.0 31 ............................. CGCGTGGGAGCCGATCCTGGTCTGTCGCCGC 187523 29 100.0 32 ............................. GTTGAGAGGGGCCCCGGCTTGTGGCCCGCACA 187462 29 96.6 33 ............................T TGTAGCCCCGCCCAACTCAGCGACGCCCTGCGC 187400 29 100.0 32 ............................. GCGCCGGAGGGCGAGTCCCGCCTGGTGACCGG 187339 29 100.0 32 ............................. GCGGACACCCCGAAGTCGTGGGCGACCGCCCG 187278 29 100.0 32 ............................. GACACCGTGCTCATCAACATCCAGGCCAACGC 187217 29 100.0 32 ............................. GCACCGTAGGTCCGGCCGAGCCCGGCGTCGGG 187156 29 100.0 32 ............................. AAGGCCATCTCTGAGGGCAAGGTCAACCCCCT 187095 29 100.0 32 ............................. TGCAGGTGTCCGCCGCCACCCCCGGCGAGGTC 187034 29 100.0 32 ............................. GGGTCGGACCACCAGCGGATCACCTGGCACCT 186973 29 96.6 32 ..A.......................... TGCGGGTGAGCCGCAAAACCGGTGAAGTCGTA 186912 29 100.0 32 ............................. CCCGCTACCGCGACCTGACAGCCCTACCGGAC 186851 29 100.0 32 ............................. GATGCGTACTCATCTACCCGCATCGGGCCGAA 186790 29 100.0 32 ............................. GCTGCGGGGGGTATTGCGAGGCGACCGGTCGG 186729 29 100.0 32 ............................. GCTGGGCACGGCGCCGGACGCAGGCTGCTCGA 186668 29 96.6 32 ................T............ GCGTCCTGGGCCAGCGCGGCGCCGATCAGCAC 186607 29 100.0 32 ............................. GTCTTCACCCCGGCGACGGACTCGGCACCCGT 186546 29 100.0 32 ............................. TCCGGCTGTCCGAGACCCACCGGTCGAGCAGC 186485 29 100.0 32 ............................. CATCCGCGGCCCTCGGCGCGGTCGACGCCGTG 186424 29 100.0 32 ............................. GGCACCGTCCTCCCGAACCACCTCACCGCCGC 186363 29 100.0 32 ............................. GGCGCCGACTGTTCCGGCTACCAGTCGATCAT 186302 29 100.0 32 ............................. AGGTCGACCGCGATGCGGTGCACTCGGGTGGC 186241 29 100.0 32 ............................. CGGTGCGCGCGGTCGCGCTCGGCGCTCTCGAG 186180 29 100.0 32 ............................. GTCGACCACCTGTCGTCGAAGGCAACGACGCT 186119 29 96.6 32 ........T.................... ACCACCCTGGGCACCGCGTTTATGGTCGTGGC 186058 29 100.0 33 ............................. AACCTCCTCGTGGCCCTGCGCAAGACCCTGATC 185996 29 100.0 32 ............................. GAGGACCAGACCGTCGACCTCGTCGAGTGCGG 185935 29 100.0 32 ............................. GACCGCCAGGTCGCCGCGTTCCGCCAGATCGG 185874 29 100.0 32 ............................. AGCTCGATGTACTGGGCGGTGTCGTCGGCGGC 185813 29 96.6 32 ..........................G.. AGGGTCATCGGGTCCACCCCGGCGGCCCGCCC 185752 29 100.0 32 ............................. GGCGGATGCGCCGGCCCTGTCGATCCAACTTC 185691 29 100.0 32 ............................. GCGATCACCGGGACGAGCACGGAGGCGAGGAA 185630 29 93.1 32 .............CC.............. ACCCCCGGGTCCAGGGCGCGCATGATCCCGAA 185569 29 100.0 32 ............................. TGGGCCGTCGCCGAGTGGACCGGCTACGTCGA 185508 29 100.0 32 ............................. CCGACTAGGCCACCCATCCGGGACTGCATGCC 185447 29 93.1 32 ..T.........................T GGCTACCTCCACGGGGTCCGGTACGCCGACCG 185386 29 96.6 0 .....................A....... | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.1 32 GTCGTCCCCGCGCTAGCGGGGGTGGTCCC # Left flank : ACCTCGACCCGACCGACGAGTACCCGCACTTCGAGGACGACGAATGATCGTCATCGTCGTGTCCGCGTGCCCGGCCGGGCTGCGCGGGCATCTCACCCGGTGGCTGCTGGAGATCTCGGCCGGGGTGTTCGTCGGGAAGGTCACCACGCGAGTCCGGGAACTGCTCTGGCTCCGCACCGTCGACATGGTCAAGACCGGCCGGGCGATCATGGTCTTCTCCGCCGACAACGAGCAGGGCCTCGACTTTCGGACCCATAAGCACGACTGGATTCCCACCGAGATCGAAGGCATCACACTGATGCTGCGGCCGAACCCGGGAGGTGAGGATCAACGATCTCCCAGTACCTCGGACCGGAGCGCGGGGTGGAGCAGCGCCGGCCGTCGACGCCGGTTCCGGGGTCGTTGAGCGAGCGTTCCCGTAACTGGGGCCCCAGAGGCCGGTTGTCGCGAAGTCGATGCAGAATTGGCTTCGGTTCGTCCGTCGTTGCTGGTCAGCAAGT # Right flank : GACGCACCCTGGTGCGATCGGGTTGGGGCATTCGTCGTGCACGGTGGGCGATCAGCCCCACGGTCGTCGTGACGACGACCGTGGAGTCCGAAGGCAGCTCTACGGCGAACGGCTCAGCGACGACGAGGACCCGAGCGGACGCTGCTGTCGCGTTGGGCCCGGACCTGATGGGCGCCTGCGGGCTTTGCCCAGGGGCGTGGTCGTCGAAGCAGATCGGGCGGTGCGAGGATTTTCTGAAAGGTGATGGGCGTGTCGCACTGCCCTCGTTTCAGAAAGCAGGGCAGGATCGTCGGCATGGCGAGAAGACCAACAGGGCGCCCGTCGAAGGGCCCGCGTGCAGTGGTTCTTCCACAGGTTCTGCTGGCCGACGACCTTGCGCTCAAGGCGCTGGCCACCAGCCTCGGCTGGTACGTCTCTGAGACGGCAGCGAAGCTCATCAACATCGGGCTTCAGCACGTCGATGAGCTCCCAGACGAGTTGCCCCTTCGTGTCCCACGCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCTAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 197241-198606 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLEK010000024.1 Pseudonocardia sp. ICBG1034 tig00000900, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ===================================== ================== 197241 25 100.0 34 ......................... TCCACGACGTCCGCAGCTCCGTCCCGGCCCCGGG 197300 25 100.0 36 ......................... TCCCTAGGGGTGTTGCGCTAAGCGGTAGCTGGCCAA 197361 25 100.0 36 ......................... TCCCGTGGCGGCAGAGCTGTCCGCGGAACACCTGTC 197422 25 100.0 36 ......................... TCCCTTCTGCGCGCTCGGAGGTGCGGGGGTGGGTGC 197483 25 100.0 36 ......................... TCCCCCGGCCAACAGCCTCGCCCGCCATCAGACGTT 197544 25 100.0 36 ......................... TCCCGGACCCTCGCCGCCGGGCAGACCGCCGTCCTC 197605 25 100.0 36 ......................... TCCCCGGCTGGACACGTTGGCGCATCTGTTGACGCA 197666 25 100.0 36 ......................... TCCCTGGATGCCGCCGCGCTCGGCCTGGAACGCGGG 197727 25 100.0 36 ......................... TCCCTTGACCGCGTAGATCGACGACGCCGTGGACGA 197788 25 100.0 36 ......................... TCCCGTCGCGCCGAACGAGCACTGCCCGGTGACCAG 197849 25 100.0 36 ......................... TCCCCGGGGCTGTTGGTGAAGCTCGAGCGCTACTCG 197910 25 96.0 36 ............T............ TCCCTGGACCGACCCGGTCCCGGTGCGTGACGCGTT 197971 25 100.0 36 ......................... TCCCCAGTGCGAGGTCGGTCTTCACCTGGGCGGGAG 198032 25 100.0 36 ......................... TCCCACGAACGTCTGCCGGGCCGGCGCCGCGGCGTT 198093 25 100.0 36 ......................... TCCCGGGGTCTACCAGGGCCACGTCGTGGTGGTGCC G [198110] 198155 25 100.0 36 ......................... TCCCGAGGTCCGTCCGCGCCTGGTCGAGGCCATCGC 198216 25 96.0 36 ...A..................... TCCCACGATCGACAGGATCGGTGGCCCCCACGCGGA 198277 25 100.0 37 ......................... TCCCGTCATGCGCACCCCGCTCGGCTCGATCGTGGTG 198339 25 96.0 36 ........T................ CCCCCGCGCGACGTAGCGGGCGATGTGGTCGCCGCC 198400 25 100.0 36 ......................... TCCCGTCACCCTGGACCTGTCGAACCCGACCGACCA 198461 25 100.0 35 ......................... TCCCTCCAGGTCGAGCTCGGCGGTCGCCGGGTGAG 198521 25 96.0 36 ...................T..... TCCCGCCCTGCAGGCGGCGCAGCAGGCGCAGACGGA 198582 25 96.0 0 ...................T..... | ========== ====== ====== ====== ========================= ===================================== ================== 23 25 99.1 36 GTCGTCCCCGCGCCCGCGGGGGTGG # Left flank : TCGCCCGTTGAGGGTGCACGCCTATCCCGTTCCGGACGACGAGGCCGTGCCGCGTCATGAGCGGCGTCAGCGACGGGACCTGGGCGGCGAACGCGGGACTGATCTTGCCGATGTCGTGCACGGCGGCGAGCCAGCGGACGAGGATTGCGACGTCGGAGTGGTCGCCGTCGAGATCGGCCGCGATGCGGTCGAGGACCAGGGGCGAGACCCACCGGTGAACCAGGAGATCGGCGACGGCCGCAGCATCGGCGAGGTGGACGTGCAGGGGCAGCCACTCAACCACGGTCGTACGGTCGTTCTCATCGGTGATCGACTTCCCCCAGGAGGACAGCCAAGGGTCGACTGCGGTCACCACACACTTACTCCTCGTCACTGCGGTACCGGCGGAGTCGTACTGAATGGGCGTTGCGTTACTTACGGTCGGCTGCGTCCGGGTGGTGGCGAGCGCCAAGTCGAATGGGATCGGGTGCCGGGAGGTATAAAGTCGCTGGTCAGAGAGT # Right flank : GTCCCGTGCGCAGGAGTGTGCGCACAGCGCCGGCCTCGGTCGCGATCAGGCCGCCGGCCGCGACGTCCCATCGACGGCGTCGTCCAGGCTGGCGTGGAACGTAGGCATCGTGTGAGCCGGTTGCTGCCGAACCGGACACCGCGGTAGCTTCTGGAGACCGACCTACCTGATCCGCAGGGGAGTCAGCGCGCTATCGCGCGTCTCCAGCCAGGAGGTCGCACCCATGAACGCCGACCAGCCCGACCTGTGGCGCTCCCAGGGCAGCCCCACGCCGATTGTGCTGTGGGACATGCTTGACGGTCCGATGCCGCGAGGGCTTCTCGGTGTCGGTGACCCGAACGTCCACCTCGTCGAGGACCGGTGGACCCTGTTCGTCGGCGGCTTCACCACCACGTTCCGCAACCGCCTGTTCCGCGCGCACCTGGTCGACGAGGCGACCGGCCCCGGCGGTCCATGGCGGCTCGACCGCGACCCTCGGGGCCGGGCCCGACCGCTGGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1231-2596 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLEK010000025.1 Pseudonocardia sp. ICBG1034 tig00000901, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ===================================== ================== 1231 25 100.0 34 ......................... TCCACGACGTCCGCAGCTCCGTCCCGGCCCCGGG 1290 25 100.0 36 ......................... TCCCTAGGGGTGTTGCGCTAAGCGGTAGCTGGCCAA 1351 25 100.0 36 ......................... TCCCGTGGCGGCAGAGCTGTCCGCGGAACACCTGTC 1412 25 100.0 36 ......................... TCCCTTCTGCGCGCTCGGAGGTGCGGGGGTGGGTGC 1473 25 100.0 36 ......................... TCCCCCGGCCAACAGCCTCGCCCGCCATCAGACGTT 1534 25 100.0 36 ......................... TCCCGGACCCTCGCCGCCGGGCAGACCGCCGTCCTC 1595 25 100.0 36 ......................... TCCCCGGCTGGACACGTTGGCGCATCTGTTGACGCA 1656 25 100.0 36 ......................... TCCCTGGATGCCGCCGCGCTCGGCCTGGAACGCGGG 1717 25 100.0 36 ......................... TCCCTTGACCGCGTAGATCGACGACGCCGTGGACGA 1778 25 100.0 36 ......................... TCCCGTCGCGCCGAACGAGCACTGCCCGGTGACCAG 1839 25 100.0 36 ......................... TCCCCGGGGCTGTTGGTGAAGCTCGAGCGCTACTCG 1900 25 96.0 36 ............T............ TCCCTGGACCGACCCGGTCCCGGTGCGTGACGCGTT 1961 25 100.0 36 ......................... TCCCCAGTGCGAGGTCGGTCTTCACCTGGGCGGGAG 2022 25 100.0 36 ......................... TCCCACGAACGTCTGCCGGGCCGGCGCCGCGGCGTT 2083 25 100.0 36 ......................... TCCCGGGGTCTACCAGGGCCACGTCGTGGTGGTGCC G [2100] 2145 25 100.0 36 ......................... TCCCGAGGTCCGTCCGCGCCTGGTCGAGGCCATCGC 2206 25 96.0 36 ...A..................... TCCCACGATCGACAGGATCGGTGGCCCCCACGCGGA 2267 25 100.0 37 ......................... TCCCGTCATGCGCACCCCGCTCGGCTCGATCGTGGTG 2329 25 96.0 36 ........T................ CCCCCGCGCGACGTAGCGGGCGATGTGGTCGCCGCC 2390 25 100.0 36 ......................... TCCCGTCACCCTGGACCTGTCGAACCCGACCGACCA 2451 25 100.0 35 ......................... TCCCTCCAGGTCGAGCTCGGCGGTCGCCGGGTGAG 2511 25 96.0 36 ...................T..... TCCCGCCCTGCAGGCGGCGCAGCAGGCGCAGACGGA 2572 25 96.0 0 ...................T..... | ========== ====== ====== ====== ========================= ===================================== ================== 23 25 99.1 36 GTCGTCCCCGCGCCCGCGGGGGTGG # Left flank : TCGCCCGTTGAGGGTGCACGCCTATCCCGTTCCGGACGACGAGGCCGTGCCGCGTCATGAGCGGCGTCAGCGACGGGACCTGGGCGGCGAACGCGGGACTGATCTTGCCGATGTCGTGCACGGCGGCGAGCCAGCGGACGAGGATTGCGACGTCGGAGTGGTCGCCGTCGAGATCGGCCGCGATGCGGTCGAGGACCAGGGGCGAGACCCACCGGTGAACCAGGAGATCGGCGACGGCCGCAGCATCGGCGAGGTGGACGTGCAGGGGCAGCCACTCAACCACGGTCGTACGGTCGTTCTCATCGGTGATCGACTTCCCCCAGGAGGACAGCCAAGGGTCGACTGCGGTCACCACACACTTACTCCTCGTCACTGCGGTACCGGCGGAGTCGTACTGAATGGGCGTTGCGTTACTTACGGTCGGCTGCGTCCGGGTGGTGGCGAGCGCCAAGTCGAATGGGATCGGGTGCCGGGAGGTATAAAGTCGCTGGTCAGAGAGT # Right flank : GTCCCGTGCGCAGGAGTGTGCGCACAGCGCCGGCCTCGGTCGCGATCAGGCCGCCGGCCGCGACGTCCCATCGACGGCGTCGTCCAGGCTGGCGTGGAACGTAGGCATCGTGTGAGCCGGTTGCTGCCGAACCGGACACCGCGGTAGCTTCTGGAGACCGACCTACCTGATCCGCAGGGGAGTCAGCGCGCTATCGCGCGTCTCCAGCCAGGAGGTCGCACCCATGAACGCCGACCAGCCCGACCTGTGGCGCTCCCAGGGCAGCCCCACGCCGATTGTGCTGTGGGACATGCTTGACGGTCCGATGCCGCGAGGGCTTCTCGGTGTCGGTGACCCGAACGTCCACCTCGTCGAGGACCGGTGGACCCTGTTCGTCGGCGGCTTCACCACCACGTTCCGCAACCGCCTGTTCCGCGCGCACCTGGTCGACGAGGCGACCGGCCCCGGCGGTCCATGGCGGCTCGACCGCGACCCTCGGGGCCGGGCCCGACCGCTGGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //