Array 1 287543-286781 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211116.1 Salinispora tropica CNT250 K261DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 287542 30 100.0 31 .............................. GCGATCGTGGCGATCCGGCCGTCGACATCGA 287481 30 96.7 31 .............................A CCAACGACAACGGGGCCTACAGCGGTTGCTG 287420 30 100.0 31 .............................. CAACGTCCCTGCCCCCGGCGGGGGGACCGAC 287359 30 96.7 31 .............................G AGATCGACGTGCCCCCTACGAGGTTAGCGGC 287298 30 96.7 31 .............................T CGTACGCGGGCCGGCACGACCTGACCCGCGC 287237 30 100.0 31 .............................. CCGAGATCGCAGCGATGCTCCGCGAGCCCTT 287176 30 100.0 31 .............................. CGACGGACACGACCCCGAGCAGGCCACGACC 287115 30 93.3 31 .............G...............G TACCGAAGTGCCCGAGCACGTATCCGACCAA 287054 30 96.7 31 .............................A TGGCCCTGGCCCACCGCCGCGGCGACGACAC 286993 30 96.7 31 .............................T GGCTGTTGCCCTGGGCTACCTCAGCGAGGAC 286932 30 96.7 31 .............................G ATCGCCCGGGCCCAGCCGGAGCGGTCGCCGT 286871 30 96.7 31 .............................G CGGGGCGCGACCAGCGACAGCGCCCGAGCCG 286810 30 96.7 0 .........................G.... | ========== ====== ====== ====== ============================== =============================== ================== 13 30 97.5 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Left flank : TGCTCAACGATGGCCGCCGCGTCCTCCCCACGCACGTGGGGGTGCTCCTCATGGCGGTGATGCTGGAAGCCCTCGACCTGCGTCCTCCGCACGCACGTGGGGGTGCTCCATCACCACCACGGACGGTCGATGCCGCTCCAGCGTCCTCCCCACGCACGTGGGGGTGCTCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGC # Right flank : GGCAGTGGGAGGTGCAGCGCCTGTTCGACCTGCAGTCTGGCAGGGTTGGCCGCATGAATCTAACGGACGTGTTCGAGTGGCGCGGACGCAAAGTTCGATGGCGTCGGATGGGTTCTGGGCCTGACGCCGTGTTCTGTCATGGGACCCCGTGGTCCTCGCAGCTGTGGGGCCCCTACGCTGAGGCCCTGAGCAGTGAGTTCACGGTTTACCTTTGGGATATGCCCGGCTACGGGCAGTCATCGAAGTTCCCCGATCACCAAGTGTCGTTGGATCTCCAAAGTGAGTTGCTGACTGACCTCGTCTCGCATTGGGAGCTCCAGTCCCCACATGTCGTAGCTCACGACTACGGCGGCGCCGTCGCGTTGAGGGCCCTCCTTTTGCATGGGTGCGCGTTCGCGTCGTTGGCGCTGGTCGACGTGGTGGCGCTGGCTCCCTGGGGGTCGGACTTCTTCCGGCTGGTGGGCGACAACACCGAGGCTTTCCACGCGCTTCCAAGCGCC # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 288755-287871 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211116.1 Salinispora tropica CNT250 K261DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 288754 30 100.0 31 .............................. AGTACGCAACCCGATGAGTGAGCTCACCGTC 288693 30 100.0 31 .............................. TGTGCACCCGACCGGGGTACAGCAGGTACCC 288632 30 96.7 31 .............................T GGGTGCAGGAGGGCACCGGCCAGCGCGCCCG 288571 30 96.7 31 ............................T. CTGAGGTGGGGCAGCCTGGCGGACTGGGATA 288510 30 96.7 31 .............................C CCGCCGCCGAAGTCGACTTGACCGGTGACGC 288449 30 93.3 31 C............................A CGCAGACCACGCTGCCATCGAACCCCTCGTC 288388 30 96.7 31 .............................C CCCGGAGCCGTCGCTCGACGAGTCGACGCCG 288327 30 96.7 31 .............................C CGTCCCCGGTGCTAGCGACCTCGGACGAGAG 288266 30 96.7 31 .............................T ACTTGATGTTGGTGGTGGTGCTGACCCCGGC 288205 30 100.0 31 .............................. CGCGGCTGGACGGGCCGCGGCTGCCAGCGCA 288144 30 96.7 31 ............................C. ACAGGGGAGGCTCGTAGAGCACGCCGACCAC 288083 30 96.7 31 .............................T CCGCACGGGCCTGCTCAACGATGGCCGCCGC 288022 30 93.3 31 ............................TC ATGGCGGTGATGCTGGAAGCCCTCGACCTGC 287961 30 90.0 31 .......G....................AT CACCACCACGGACGGTCGATGCCGCTCCAGC 287900 30 96.7 0 .............................N | ========== ====== ====== ====== ============================== =============================== ================== 15 30 96.5 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGG # Left flank : CACCGACATCCAGCGCCTACTCGACCCCGACAGCACACCCAAACAGCGGCAACCCGTTGCCGAAGTCACCGCCCTCTGGGATCCAGAGATGGGGGCCATGCCGTCCGGAGTCAACTACAGCTCAGACCCCTGGGACTGACGTGGCCTCCCTTGTCGTCCTGGCCACCACCGCCGTACCCGACCACCTACGCGGCGCACTCAGCCGCTGGATGATCGAAGTCACCCCCGGCATGTTCGTCGGGACGCTCTCCGCCAAAGTCCGCGACGAACTATGGAACGCAGCAAGCAACGTCGTCGGCGACGGCGCCGCCGTCCTCATCCACCCAGACGATACCGAGCAAGGCTTCTCCCTACGGACCGCAGGAAAACGCAGACGTCGGCCGGTCGACTTCGATGGCCTTACTCTGGTGGCGATGAGCCCCAAAGAACACCAAGGCAGCACTCCCACCCCGGCCGAGAGAATCTGGCCGGACGGCTGGTAAAACCGCAGGTCAGGAAGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCGTCCTCCCCACGCACGTGGGGGTGCTCCGCGCGATCGTGGCGATCCGGCCGTCGACATCGAGTCCTCCCCACGCACGTGGGGGTGCTCCGACCAACGACAACGGGGCCTACAGCGGTTGCTGGTCCTCCCCACGCACGTGGGGGTGCTCCGCCAACGTCCCTGCCCCCGGCG # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 298192-298648 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211116.1 Salinispora tropica CNT250 K261DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 298192 30 96.7 31 .............................G ACTACCGCGATCGAAACGCGACCGCGAAGAC 298253 30 100.0 31 .............................. TGGACATCGCCTCCTTTGGCGACGCCTCACT 298314 30 93.3 31 ............................TC TGTTTGGTACCACCGATTTTCGTAACATGTT 298375 30 96.7 31 ............................A. TCCGCCTGGGTGGCGCCCCGGTTTTCCGCCC 298436 30 96.7 31 .............................C CGAGGACCAGGACGACGACCAGGACCAGGAC 298497 30 96.7 31 .................A............ GCCGCCAGTCGGGACGCCAGAGCCAATCGCG 298558 30 96.7 31 .............................A GCACGGTCGCTCGGGCTCTGGCAGAGGCCAG 298619 30 93.3 0 ............................AC | ========== ====== ====== ====== ============================== =============================== ================== 8 30 96.3 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGT # Left flank : CCATAGGGGCAAGAAGATCCGGCAGGGCCAACTGACCGGCGGTGTCGTGCCTCAGCGAGCCATCTCCGGCGGCCTCCTCATACGAACCGGAATCCCTCAGGGCGCTGAACGCCACTTCGCTTTTCTTCTGGAAAGCAGGGGTCGCCTTGCCTACATCATGCAACCCCGCCCAAAACATGATCAACGCCCTGGCATGGGTCTCGTCAGTGGCCAGCCTCTCTACAATGACCCTGCGTTGGTTCGGGGCCAGATAGCGATCCCACAACGCACCGACAACGGCCGCGGTGTCGATCAAATGCCAGAGCAGCGGGTACGGCATCGGAAGGTGGTTAGACTTGCCCCAGATTCCAGCATCGACCTTCTCGTGGTCGAACCCCACTCCGACCGCCTCCATTCACATCCGCTCGCGAGGGCGTCAGCATGGAACCACAGCCATACGACACATCCACCCGCTCGACACAAAACCGCTCCAAGGCGGATAGACGCGCAGGTCGCGAAGT # Right flank : CGACTGCGACCTCACCACCACCTTCGAGGCAGATCCTCTCCACACAACGAGATCGCGTGGTCGGCTCGTACCGGACCAAGGAACTTGTGCTACCCGAGAAACGGGCGTATGGCCTCCGCCGACGGGCTCTCACCCCAGCCGCTGGTGCACAGGGGAGCTACATATCGACACTGGACCGTCTGATCAACGGCCGCGGCAGCCTACACAGTAGACCGGCGTTAGCCTGCTTCAGATATTGATTAGCTGGGAAGCAAGCCAGAACGGATGAAGGTGATCAACCCCGATGGTCGCGGCAGCTGAGACCACCCTGCAAGGTCTTCTCGAGGGCGCCAAGCAGTACCAGGTTCCGCTCTACCAGCGCACCTACTCCTGGACTGATCACCAGCTGAAACGGCTGTGGGAAGACCTACAACGCCTGGCTGAGGACCGCAAGGAGAACCAGAAGACGACTCACTTCATCGGGTCACTCGTACTCGCACCGAGCCCGCAGAACGGCCCGG # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11899-13020 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHVW01000030.1 Salinispora tropica CNT250 K261DRAFT_scaffold00021.21_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11899 29 96.6 32 ............T................ CCGCCGTCACCGCCTGGGTCACCCCACCCACC 11960 29 100.0 32 ............................. CTTGGGGCAACGGGTGCGAAGCATTTCACCCG 12021 29 96.6 32 ............................G TCGCCGGCTGGCTGTGCCCGACCACCCGCGAC 12082 29 100.0 32 ............................. ATAGACTGGACACGGAGCGCATCCGTCGCTCT 12143 29 100.0 32 ............................. CCTGTCACTGGACGAGGTTCTCGACCAGCTAC 12204 29 96.6 32 ...............C............. CCGCCCCAGCCGACGTGCTGGCACAGCTACCC 12265 29 100.0 32 ............................. GCCCTGCTGAGGATGCGGTGAACCTTCAGTTG 12326 29 96.6 32 ............................G GGCTCGACGTTGGACTACGTCGGCGCGGCCGA 12387 29 100.0 32 ............................. GCCCTGCTGAGGATGCGGTGAACCTTCAGTTG 12448 29 96.6 32 ............................G GGCTCGACGTTGGACTACGTCGGCGCGGCCGA 12509 29 100.0 32 ............................. GCCTGATCACCCACGGTATGCCTTCGCCCTGA 12570 28 96.6 32 .................-........... GCCGCGATGACCGCAAACCCGATCGGGCTAGT 12630 29 96.6 28 ............................A CCAACGACACACGCCACGACCTGGGTGG 12687 29 96.6 32 ............................T GCCTCCAGCTTCTGACTGGCGGACGCCTCCAG 12748 29 96.6 32 ............................T CGAGGGTGATCGTGACCGTGCCCCCGCTGGAT 12809 29 96.6 32 ...........C................. GTGCCGCAGTGGGGCGCCGAGCGGATCGCCTC 12870 29 100.0 32 ............................. CAGCAGCTGGACACCGGCTCCGGCTCCCCGCA 12931 29 96.6 32 .........................C... CGGTACCCGTCGCCGAACAGTCGGCGGTAGGC 12992 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 19 29 97.9 32 CTCGTCCCCGCACGCGCGGGGGTCTTCCC # Left flank : CCGCTAGCCGATGCGCCAGTCGGCTGCCCGGTCGACCGCCCAGCACCGCCGCGACTGCTTCCAGGTCACCTGCGGCCGAGACGGTGTGACGGGCATGCCGCCGAGTCAGCCCGGGCACCTGCTCGACGAATGTCCGCCGCCCGCATTCGGTGTTGGCGCAGGTGAATCGGCGGACCGTCAACGCGACCAGCACCTCATGACCACCCAACCTGACATCGGCCAGCCTCCGCACATAGCGGCCATGCACAGTGGTCGACCACACGCCGCAGGCGCCACACCGTGCCCGCACCGTCTGCGTCGCCGCGGTGATCCTGACCCCGACGGCCCGGACCACCACCGCCTCCAACCGCAAGCCCGTCAGGTACGGCAGCAACGCCGGAATGATCTCCATCCCGGCAACCCAACCCGAACTACCGACGAGCGCGACTCACAAAATGTGTGCCAGAGCCAAGTTTGGGGCGGTGTTGACAGCGTCGGCGCGAAGCGGCGACCTTTTGGAC # Right flank : GGAACGAATGAAGCTCGAGCAGGAGCAGGAGCAGGAGCCATCGCGCGGGGGTCTTCCTAAAAATGAACCGTTTCATCCTGCGTAGCGGTTCGCGTCGACGTGGTGCAGGACGGGGATTGCTTGGACGATCGCGGTGGCTCGGCGTGGGCAACAGCGCAGTTTGACCAGGATCTTCCAGGTCTTGAGCGTGGCGATCGCTCGTTCGGAACGTGTCAAGGGATTGAGGCCAACGGGAGTTAAGCGGCTTGCGGTTTGGGCTGGGTTTCCTGGTCGGGCTGGTTGATCCAAACCTGGTCGGGCAGGTCGAGGATCTTGGGTAGTGGCCGGCTGGTGCCGAACCGTTCCGGATGCGCGGCGCGAGCCGCGGCGAGGGTGTCCTCGCGACCGGCGCGAACCTGGTGGTGACGGCCGTGGTGGACGTCAGCGGGGGTGTGCAGGCCGATTCCGGAGTGCCGGTGAGCGTGGTTGTACCAGGTCACGAACTCGGTCATGAATGCCCG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCACGCGCGGGGGTCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5369-6678 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHVW01000035.1 Salinispora tropica CNT250 K261DRAFT_scaffold00026.26_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 5369 30 96.7 31 .............................G AGTTCGACCGAGTGGACTGGACACTGTCCGA 5430 30 96.7 31 .............................G TAAATCTCCGCGCGGCTCAACGTTCGCACCC 5491 30 93.3 31 ............................AT CGCCACCGTTTGCCGCCGGATCGGCCGATCT 5552 30 96.7 31 .............................A CGCTCCCCGCACCTGGCGAGGCAATGCGGCT 5613 30 100.0 31 .............................. GATGGTCGGCCGCCGTCTGGCGGGCCTGGCG 5674 30 96.7 31 .............................A CAACGGCGATGGCGGCCCGGATCGTGGACGC 5735 30 96.7 31 .............................T CGCGGCCGAGCACCTGTAGCCAGCCGACCGC 5796 30 96.7 31 .............................A TTACCGTCGGCTGATTGTGCAGCGGGGAGTT 5857 30 93.3 31 ............................AG CCCGGTCACCTCCCGCTGGGCGGCCACCGCC 5918 30 100.0 31 .............................. CGTTCATCACCGGCCCGGTCGTGCAAGACGC 5979 30 96.7 31 ............................A. CGGCCTGACTGTCGACCCCGACCGGGAGCCC 6040 30 96.7 31 .............................A GGGTCGCTACTTGTGGGCCGGATATAGCACC 6101 30 100.0 31 .............................. GGACCGCACCGAGCACAGCGACCCGTACGGA 6162 30 100.0 31 .............................. CGTCGAGCACCCCGGCCACCCGGGCGGCGCC 6223 30 96.7 31 ............................T. AGCCATCGACCGGGTGAACCGGCTACAAGCC 6284 30 100.0 31 .............................. CGTTCATCACCGGCCCGGTCGTGCAAGACGC 6345 30 100.0 31 .............................. CAGCGGCTCGGGCCTGTTCAATGCCGCCTGC 6406 30 100.0 31 .............................. GCTCAGGATCCGGCGGGATGTGGCCGATCCG 6467 29 93.3 31 ..-..........................A AGCCAGAGCCTCCGCGCCTAGACGTCATCGT 6527 30 96.7 31 .............................G CGTGCGACGGCTGCCCGGTGAAGGCCGAGGG 6588 30 96.7 31 ..........T................... CGGGGACGGTGATCGATGTCCGGTCGGCACA 6649 30 86.7 0 .........................CGT.G | ========== ====== ====== ====== ============================== =============================== ================== 22 30 96.8 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Left flank : GCCGGAGCGCCCCCGCCCGGAGGCGCACTGGCCGCAACCCGCGACTGCCGGCAGTTCGCCGACGGGGCTGGCGTGCGCTCCCTTACGCCGCGTGGGCATGTGGCCGCGCGGCCAGGCCGGCTGCCGGCCACCCCTCACCCGTCAACGGTCTGTCGTTCTGCGGCGGCCCCCGGGCTTCCCGCTGTCCGCGCCAGCTGCCGGGCGTCAGGCGTGACGGCCGCAGAGCGACAGCGGCCGGCGTGCGCCCAGGCGGCGGCGAGTGCGGCCCGTTGCGGGCCGCCTTGAAAGATCGATCAAATGCCAGAGCACCGGATACGGCCTCAGAAGACGATTAGACTTACCCCAGATCCCAACATCGGCCCCATCCTGATCGACCCCTATCCAACCGCCTCCATTCGTCTCCGCTCGCAAGGCATCAGCATGCAACCACAGCCATACGACACCACGACCCGCCCGACGCAAACCGCTCCCAAGGCGGATAAACACGCAGGTCGCAAAGT # Right flank : GTCATGGATGTCTTCGCCGGCCGGGCTCCTACCCACCACGACCCAGGTCACCGTTATCACCACTGTGCTGGGCTGCGTACCCGAGACCGCGGAACACCTCGCCGCCGCTGCCGGCGGCACCAGCGCCCTCGACGAGAGCTTCTGGGGCATCGCCGAAGCCGTTGACGCGCGCCCACCAGACATGTTTCGTAATCAGTAAGCGCCGGAGGTGGCCGGCCTGGCATAGCCGCACACGTCGTACACCCAGTAGTTCAGATACCTGGCCACGGCCGCGCGGTCGGCAAGGTCCAGCGATAGCCACTCCCGTGCCGCCCGAACCATTTCAGCTGCGGCTTGTTCCGTCTCGTCAGGCTTGAAGCTCTACCCAGTCGGTAAGTGCGCCCCAGATGAGCCACACGAAGCCGGCCGGCTCCACCTCCGTCGACGCATGCGCCGACAACCCATGGATCCCGATCCCCACCTCGTATGGGTCGTCAGTGGCGACAAGCTCCTCGGCCAAC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 157086-156139 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211118.1 Salinispora tropica CNT250 K261DRAFT_scaffold00004.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 157085 37 100.0 38 ..................................... GTCGTGCCGCCTTTGAGGTTGGCGACAGTGATCACGCT 157010 37 100.0 40 ..................................... CCTCCCGGTTGGGCTCCTGGTCGGCGTTCCCGCGCCGAGT 156933 37 100.0 39 ..................................... GTAGTTGGTCTGTCTGGGCAGGTCGACCGCCCGCCGGAG 156857 37 100.0 39 ..................................... GTGTGCACAATCAGCCGCTGAACAAACCTGACCACACGA 156781 37 100.0 38 ..................................... CGTGTCCAGGCGACCCGAGGGCCCCTCTAACACCCACC 156706 37 100.0 38 ..................................... CAGAACGCCACGACCTGCTCCATCTCGGTGTGCACCGC 156631 37 100.0 40 ..................................... ACCGACGGCGCTGACCCGTCGGTGGACCCGATGGGCGACG 156554 37 100.0 41 ..................................... GCAGGGATGGACCTGGGCGGCCGATACGACGCTGTCGGGAA 156476 37 100.0 38 ..................................... GGGCACCTCGGGCACTGCCCGGACATCGGGCACCACGA 156401 37 100.0 37 ..................................... TGTGACCAGTGCGGCGCGGCGGTACCGTCCGGCGCGG 156327 37 100.0 39 ..................................... ACGTCGCCCGTGAGACCTGGCAGTTGCCCGGCCCGTTCG 156251 37 100.0 39 ..................................... GCCGTCCGCTGTTGGCGGTAGCTCCTGTCGGACGCCCCA 156175 37 97.3 0 .........T........................... | ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 99.8 39 GCTGCGCCCGGCCACCGCGTCGGGCGAGGATCGCAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT # Right flank : GCGGGCGTCGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCACCGCGTCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.90,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [5.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 160760-160420 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211118.1 Salinispora tropica CNT250 K261DRAFT_scaffold00004.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 160759 37 100.0 39 ..................................... GCGATCCGTGCGCGCATACTCAGCGCCTCACCCTCAACA 160683 37 100.0 38 ..................................... CTCGCCGAGCTCGCGCACGGCGGCCTCGGCCGGCGTCT 160608 37 100.0 38 ..................................... AGGTCGCCGTTAAACGTGTCGATCTGACGGCCGACCGT 160533 37 100.0 40 ..................................... GAGTTGATGGCGGCGGGCGGACTGCGCGGCCAGGGCTTGG 160456 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 100.0 39 GCTGCGCCCGGCCACCGCGTCGGGCGAGGATCGCAAC # Left flank : CTGCCACTCGTGCAGGCCCGGCTGCTCGCACGTCACCTCCGCGGAGACCTGCCTTCGTACCATCCATGGACGGTGAACTGACCTATGGACCTCCTCGTCACCTACGACGTCGAAACAGCCACCACCGAAGGGCAACGCCGACTGCGTAAGGTCGCCAAGATCTGCGAAGCGTACGGCCACCGCGTACAGAAATCCGTATTCGAGGTCGTATGCCGCGAAACCGACAAAGCACACCTCGTTAGAGCCCTCCAAGAAGCTATCAACCCGACCCAGGACAGCATCCGCATCTACCGACTGCCAACCCACGCCCTCGACGACATCGAACACCTCGGCAAACCGCGGCAGGTCGACCCACGAGGAGCGTTGGTGATCTAGGAACCCCAGGTAAACACGGAAGCCCAGAAGATTCCGAGGCGATAAATGCCTATCAAATGCATAAAACGGACCGCGGGCAAGGATGTAATGCGTTGACGCATCTCTATCTATGCTGCTCGTGAACT # Right flank : GGGTCCGAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCACCGCGTCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.90,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 26588-25795 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211123.1 Salinispora tropica CNT250 K261DRAFT_scaffold00031.31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 26587 36 88.9 39 A..GG......A........................ TTCCACAAGGCCGCCGAGTCCGGCCTCCACGATCAGCGG 26512 36 97.2 40 ...................................T CCGTGTGCGTGCTCTACGCCGCCGCCGTGACCGGCTCCAC 26436 36 97.2 39 .........................C.......... TCGGCCACGTGGTAGAGCAGGAGCGCCCGGCCCCATCGC 26361 36 94.4 37 ......................T...........A. CGGCAACGATTTCTGTGGTCGCCTCAACGATCACACC 26288 36 100.0 41 .................................... GGCCAGGGAGCCCTACCGGTGTTGGCCGGGCCGCTCGCCGT 26211 36 100.0 42 .................................... CGGATATCGCATCGGGGGTGACGGGGGTGAGGACATCCCCGA 26133 36 100.0 40 .................................... CACCGGCGGTGAGTACCGCACCGAACATCCGCACATCGAA 26057 36 100.0 40 .................................... CGGTGGCGTATGGTCTGGCCGCCGCGCTGCTCGCCGAGTT 25981 36 100.0 39 .................................... CGGCTGGCTCGGCAAAGACGGCCGCGGACCCGCCGCCAA 25906 36 100.0 40 .................................... CCCGGCGACCAAACCGCAACCGGGCCACGGTTAGCGTGCG 25830 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 11 36 98.0 40 GCCTCAATGAAGGGCAGCTCCGCTGGGAGCTGCGGC # Left flank : CCGATGCTTGTGGATGATCCCCTGATCATGGCCGGATCTGCTAGCCCTCGTATCACCAGCAGCGCGGACGCAGGGGCGGGCCGTAGAAAGGACTACACGTCGTCGGGGGGTGATCGCGTTCTTCCTCCCTGCCCGACCAGCGTCGAGGGTGTTGCGAGCCTCGCTGGCACATGCGTTGTCGCGGATCTCCGCCCGAGACAGCCCACATCTGTCCCACGAAGGGGTGGGGGTGCGGACATGAGCGGCACCGGCGGTCGGTGTGACGGGGGCTGGGGTGACGTCAAGGCACGTATGGTCGAGCGCCGGGCCGGGACCGGTGTTGCGTCAGCCAGTCGCGCCGATGCTCGCGGCGCCGGTCGACATCATGCCCGAGGGCCCGGGCCTGGTGCACGAGCCGAAGCGGGACGGATGGCGGATGAACGCCTTCCGCGAGGCCGACGGACCGTACCTACAGTCACGAGCGGGCCGGAACCTGTCCAGCTGCGATACGCAAGACCCCG # Right flank : TGGGTCAGAATTATAGCCGCTCTGGCCTGCACCTGAACCGGTCTGCTGCGAAGGGTGCGCTTCCTGCGAGGCGGAGTAGCGCTCATGGCCGTGTACCCGCAGACCTACCCGGCATGTGAGCTGGACTGACACCCTGGCGACGGGTCCGCGCTTAGCGGCGAAACGACGCAGGCTTCGCCGGTGGTTCAGAGGATCGCTGGTCCGTGGTCGGTGATGGTGCGGCTGCAGCCGATCACGTCGAGCGATCGACGGTTGTTCTCGCGAAGGGTACCCAGGTTGCAGAAGAGGACGGAGTCTCTTTCCTCGTCGATCATTTCGGTGAGTTGGGTGCGGAGCCGTAGGAACTTTGCTGGCCGGGTGTCCACGATGAACACGCTGTGCTGTATGCGGTCGCCGTATGATTCGAGTTTCTTGGCGACCTTCGTTCGGCGGATGTCGTCGGATATGTCGTACGCGATGAGGTAGCGTCGCACGTCGTCAAGGTTCATCGGGTTTTGATG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCAGCTCCGCTGGGAGCTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //