Array 1 235-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAYI01000006.1 Streptococcus gordonii strain FSS2 Contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 234 36 100.0 30 .................................... AAAAACTACGTATAAAGTTGTGGCACCTGC 168 36 100.0 30 .................................... AACCTCATCATTAACTACCACTTGATCAGC 102 36 100.0 30 .................................... ATTTTTCCCCAATTTTCCCCAAATAAAACT 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAACTCAATGACAAGCCCGAAGTCAAATCCATGATTGAAAAGTTGGTTGCTACGATTATAGAATTGCTGGCATTTGAGTGTTTGGAAAACGAGTTAGACCTAGAGTATGATGAAATTACCATTCTAGAGTTAATCGATGCACTTGGTGTCAAAGTCGAAACCCTGAGTGATACACCTTTTGAAAAGATGCTAGAAATTGTCCAGGTTTTTAAATATCTTTCTAAAAAGAAACTCCTTGTTTTCATCAATGCATCCGCCTATCTATCAAAGGATGAGTTAGTAAATTTGATAGAGTATATCCAACTAAATCAACTAAGTGTTTTATTTGTCGAACCTCGAAAAGTCTATGATTTTCCCCAGTATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTAACAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : C # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1-299 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAYI01000014.1 Streptococcus gordonii strain FSS2 Contig15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 35 97.2 30 -................................... ATCTAAACTTTATGAAAGTTATGTAGAATT 66 36 100.0 30 .................................... TTATTATTGGTATGAAATGAGGGTTGAATA 132 36 100.0 30 .................................... CCTTTCCAATAATAAAATCAAATTCCGTTG 198 36 100.0 30 .................................... ACTCGGTTCAGGGCTTAGTTCTGGTGTATC 264 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 99.4 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : | # Right flank : AAACCTTAGAAACAGACATGGGACTTGTCAAGTTTTAGAGCTGTGTTGTTTCGAA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 773949-773781 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAYI01000004.1 Streptococcus gordonii strain FSS2 Contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 773948 36 100.0 30 .................................... AAAATTTCTGCGAGAGCTTGCTAAATACGA 773882 36 100.0 30 .................................... CAGAAATCTGAAGAAAAAGCCCATGCTGAA 773816 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TGTGTTGTTTCGAATGGTTCCAAAACTGAGGGTGGAGTTCGTTTTTGGCACTATC # Right flank : AATATTAAGTTTTAATTCAATTCAACCGTACTAGTTCAAGGTTGGTGAGGGAGTTTGTGTTATTTGCAAAAAATTTAAAAAGATTTGTTAAAATTGTTGACAACCACGGAGAACCCCGATACGATATAATTAGAAAGGAAGAAGATATGAAGATATGAGAGGTTGCCAAATTAATGGAAGCAACTGTAAATCTGTTAACAGGTGTTGCCAGTGTTTCCATGGTAATAAAAAAGAGCCAAAAGAATGTAAGTGACGCAAAGATAAACAGTTCAAGTAAGGCTCTGGTAGGTAGGGATGAAAGCCCCTTAGACCTTACCTCGACTATATCATATCAGATAGTACAATGAAATATTTACCAATTTTTACAATCGTATTTTTTGCTTTCTTGCTAATTTTAAAAGATAGACGGAAGTAAGGATGGAGTTCAAATGAGAAAGCAAATAGAAAAGCTATTAAACAGCGATATAAGCACAAGCGCAATCGCTAAAGGAGCAGGTGTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //