Array 1 2383401-2381894 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCMF010000001.1 Bradyrhizobium sp. U87765 SZCCT0134 NODE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2383400 32 100.0 33 ................................ TGCGATCTGGTCGAACACTAGAAGACGGGGGAG 2383335 32 100.0 35 ................................ ACCTGAAGATTGCTGAGACCAGCAAGCATCAGATT 2383268 32 100.0 37 ................................ CGGAAGCATATAGCCTTCATCGATAAAGACGCCGATG 2383199 32 100.0 36 ................................ GCCACCACGCTGGCTACCGTGAACGCGTCGCCAGGA 2383131 32 100.0 34 ................................ GCAGCGCGGCTTCTTCGGCGGCGCGGTCCTGGCC 2383065 32 100.0 35 ................................ CTCCAGCGCCATCCGGTCTCAACGGCCTTCTGAGC 2382998 32 100.0 33 ................................ TACACGTGGCGGGAACTGCGCCGCGGAAATCGA 2382933 32 100.0 36 ................................ ATCGATGGCGATCTTGGGCGAGTTGAAAGCAATCGC 2382865 32 100.0 34 ................................ AGAAGCTGCTGGCGATGGGGGTGGACGGCGCGGG 2382799 32 100.0 35 ................................ GATAGATTCTGCCGGAGTGAAGACCCCATCCGATT 2382732 32 100.0 36 ................................ AGAATCTGCAGCCGTATCTCAATCAACAGGGCGCGG 2382664 32 100.0 36 ................................ GGCGCGATTGATCCACGCGCTCTTGCGCACGAGGAT 2382596 32 96.9 37 ......................A......... CTTCTGCCAAGCTCGCAGCCATTCGCGAGCGAGGAAC 2382527 32 100.0 34 ................................ CACGGAGACGTGCAATATGACCTGAAGCCAAGCC 2382461 32 100.0 35 ................................ CGCTATTTGATCGCCACGTCCTCGTTCACGGTGAC 2382394 32 100.0 34 ................................ AGACCCGGTCTCACCGGTCCCCGCAAAGTGTCGC 2382328 32 96.9 35 ......C......................... TCCGCCATCAACGCCTCAACGTCCTTGCCTCCACT C [2382324] 2382260 32 100.0 34 ................................ TTCTGGTTCGTCGATGCCAGCCTGTCGGCTCCAG 2382194 32 100.0 35 ................................ CAGATTTCGGGTTCGGCGACCGATCAGGGCGTGTG 2382127 32 100.0 35 ................................ GGCTCGCAGATCGCGATGAGATCGCGCAGCCCCTC 2382060 32 100.0 35 ................................ AAACCATCGTTGTTTCCTATTTCGGGGCGACTGCT 2381993 32 93.8 36 ............................C.G. CAGGTCACTGTGCCCGGGCTCTGTCGGGTGACGTTC 2381925 32 87.5 0 ................G.......T.GA.... | ========== ====== ====== ====== ================================ ===================================== ================== 23 32 98.9 35 GTCGCCTCCCCCGCGGAGGCGTGGATAGAAAC # Left flank : TTCTGGAAATAGCGAACTCATCATGCTCGTCCTTGTGACCTATGACGTGCGTACGAGCGAGCCGGGCGGAGAGGCGCGCCTGCGGCGCGTCGCCAGAGCCTGCCGTGACTATGGCCAGCGGGTCCAGTTTTCAGTTTTCGAGATCGAGGTCGATCCGGCACAATGGGCCAGGCTGAAGGCCCGCCTTGAGGGCTTGATCAAACCCGAGCATGACAGCCTGCGTTACTATTATCTGGGTGCCAACTGGCAAAGGCGCGTGGAGCATGTGGGCGCCAAGCCCGCAGCCAATCTCGGCGGCCCCTTGATCGTCTAACAACCCCGGCGCGAACCGCAAGCGCACCCGAATCTTCCGGGATGTTCGCGCTCTCCGTAAGACGCTGATGATAAAATAGAATCCGGCGACATATCACTCACAGCACAGACGCAAAGACGATCAGCGCGACCACTTCGCGCAACGGACATAATTTCCCATGACAACAGAATAGGTTAGAGCAGGAGCG # Right flank : ATCGCGCAGACGGCGTGAACGTATGTCGCCTCCAGGCACCTGGCATTGCGTATGTGCTGCGCAGCACCACGAATATCCCCCGCTTTGAACGATTCCAGCGGCAAGGCCACCAGAAGGGATTATAGCCGCCAAGCGGATATGCCACACACACCGTCTCCTCCACCGGTCCGACGCACCCCGCGGTTCACCCGGTGCGGGCGCGACCGACGGTGAGACGATGACCGGACCGACCCTGCGCCGCTGGCTGTGGGTGCACAAGTGGACCAGCCTGATCTGCACGCTGTTCCTGCTGCTGATCTGCATCAGCGGCCTGCCGCTGGTGTTCCGCGACGAGATCGGCGACCAGCAGGATGACGGCCTGCCCTATGCCAGCGTCGGACTGGATGCCCGGAGCGTAAACCTCGACGAGGTCGTCGCGACCAGCCGCAAGATGTATCCCGGTGAAACCATCGTCTCGGCGTTCGTCGACGACGACGAGCCCAGGATCATGGTGTTCATGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCCCCGCGGAGGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2391873-2391570 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCMF010000001.1 Bradyrhizobium sp. U87765 SZCCT0134 NODE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2391872 32 100.0 36 ................................ GCGCAAGGCGCAGCGCCGGTCATCGCGCAGCAGGCC 2391804 32 100.0 36 ................................ ATGTTGAAGTGCTCGCCTGTCGCAAACATGATCCGT 2391736 32 100.0 35 ................................ CCCCAAAACAGAAAGTACCCGGCGCGACGATCAAG 2391669 32 100.0 34 ................................ GTATTCACGCCAGTGCCAAAGTAGCTCAGCGGAA 2391603 32 96.9 0 .............................T.. | CG [2391574] ========== ====== ====== ====== ================================ ==================================== ================== 5 32 99.4 36 GTCGCCTCCTTCGCGGAGGCGTGGATAGAAAC # Left flank : GGTTCTGGTCCGACCAGGGACCGGCGAAGCTGCAGATGGTCGGCCTCGCCCACGGCGCGACACGCCAGGTGATCAGCGGTGCGGCGGAGGACGGCGCATTCTCGATCTACCACCTGCGCGATGACGAACTGCTGGCGATCGATTCCATCAACCGCCCCGCCGACCATATGCTCGGCCGCCGCATGCTGGCGTCGGGCTTCCATCCCGGCGCCGCGCTGATCGCCGAAGGCCCGGCCGCGCTGAAAGCCGCGTTCGCGGAGTTCGGCAAGGCCGTGCCGAGCGCGCGCTAGGATCTTTCCGAGCCGTCCGCCCTCGGTTGTGGCGCGAACCTGAAGCATGCCGGGATTTCCCGGCACCTTCGCGCTCGATCTAACACCCTGAAACATAACAGTATTCACGACCAGCCCCGCGACCTCGGCCAACCTGCAGCGATTTTTCACGACAGGTTCGCGCAGACGCCGCCTTTTCGCCAGCAAGCCGAACAGGTTAAAGGCTGAGCA # Right flank : GTCGATCGCGCAGTCGGGCCCCATACCCCTGCCCACCAGACCCGCACAGAATACCATCATCGGAGTTGACCACCCTTACCACGACAGAAGACTTGACGAGGCAGCCTCCAGTTTCCACACTTGGAGAATTCGATTTTTTGTTCTTTCGAAGCTCCGCCATTTTCTGCTCCGGCTTCATTCATCCGTCGATTGTCCTCCCTCCGGCAGCGCCATGCACTACGCGCATTCGACCAAACGCGCTGATCGCTCCGACTGGCAGCGGCTTCTCGATCATCTTAACGCAGTCGCACGCCTCGCTGCGGAACTGGGCAACAAGTTCGGCGCAGGCAGGGCTGCAGCGCTGGCGGGGCTTCTCCATGATCTCGGCAAGTATGCGCAAGCCTTCCAGATCTACATTGGAGGCCACGGACCGAGCGTCGATCATGCCACCGCCGGTGCCCAGCAAGTGCTGAAACTGCCGATCGAAGGGCGCGACAGGGCGATCGCCGATCTGCTGACCT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCTTCGCGGAGGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.10,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //