Array 1 95763-97315 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWK01000009.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-5196 NODE_9_length_143785_cov_114.431699, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95763 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 95824 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 95885 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 95946 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 96007 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 96068 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 96129 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 96190 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 96251 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 96312 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 96373 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 96434 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 96495 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 96556 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 96617 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 96678 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 96739 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 96800 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 96861 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 96922 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 96983 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 97044 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 97105 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 97166 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 97227 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 97288 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113630-114147 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWK01000009.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-5196 NODE_9_length_143785_cov_114.431699, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113630 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 113691 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 113752 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 113813 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 113874 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 113935 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 113996 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 114057 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 114118 29 93.1 0 ............TC............... | A [114145] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //