Array 1 71525-70694 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAM01000001.1 Bibersteinia trehalosi strain DSM 23101 Ga0244685_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 71524 32 100.0 34 ................................ CACTGCAGCTTACCGAGGTTTGTACAACTATGCG 71458 32 100.0 34 ................................ ACAATCTGCACTTTTGCCCTTGCTTGTCGTTCGG 71392 32 100.0 34 ................................ ATAGCTTGGCAGAATTGCTAGATCAAGCGAGCAA 71326 32 100.0 34 ................................ AAGCGTTTAACCCACACACTGTCTTCGTTTTGAA 71260 32 100.0 35 ................................ GCCTTTGGCGTTTAGCTGCTCAAACGTTTCAGGAT 71193 32 100.0 34 ................................ CATGAACCGAGTTCAATGAGCATAAAAGTTAGAT 71127 32 100.0 34 ................................ TTTATAAACAGACTGCATAGAGCCAAAAGTAACC 71061 32 100.0 34 ................................ TCGTGGACTGGTATCGGCGCAGTAATCGGTGCAA 70995 32 100.0 34 ................................ AGCAACGTTTAACCGATCCCGCCCTTACTAACCT 70929 32 96.9 35 .....C.......................... ATCATTTGGTATTTAGCCATTTCCATCCCTCAATA 70862 32 100.0 39 ................................ AATGCCTGCCAGTGTAGCCCGGTGCGGTGATGTGCCTGT 70791 32 100.0 34 ................................ ATCGTTCTGGAAAAATTCAGAAAAACAGCTTTAA 70725 32 96.9 0 ................G............... | ========== ====== ====== ====== ================================ ======================================= ================== 13 32 99.5 35 GCAGCTACCTGTAGGTAGCTGAGAGTTGAAAC # Left flank : ATGACTGTCGATCTTGGTATTAATAGTAATGATAAAGTGGGGGATGAAGCTGAGCTTTGGGGGGAAAATTTGTTAATTGAAGAAGTCGCTAATGCCATGGGGGTAATCAATTATGAATTAATTACCAAATTAACCCCAAGAGTGCTTTTTGAATATCTTGATTAACGCTAGCACATTTAAATAATCTTGTAACATCATTCAAAAAAAGGATATTACACAGCGTTGAATAGTTTGTAAAAAATTCCCTGAAATAGACCGCTTACATAAGATAAAGCAACATTACCTCCTAATGTTTCATGTTTATTTCTCTTCTCGCTAACCCTCGGTTCTCATCAAAATACCAAGAGGTTAGCGATTTATTATTTCCCTTACGAATCAAGTTGTTACAAACTTCCATCATATAACAGATATTATGCTACACTGTAAATCAATCCCCATATTTTAAGCTAGCGAATTGTTAGGGTTTAATCCTTGTGACGTAATGCTTTGATATATAGGGA # Right flank : TTAATGGTTTTGCATACCGTTACCCCCTCAAGTGGCAGCTACCTACGGGTAGCTGCCATTCTATTTCTAGCAAAGATGAATGTTACTCAAACAAATCTCCAAGCAAGAATTGCAATACCGAATCCATTCTTAAGTGAGGAAGAGCTTGGTCAAAGTCGATTTTTCTAGGTTCAAACTGATCGAAATCGAAGGTATGATTTTGCCAAAAATCCGAATTCGGTAGCCGATTGGGGACACTCCCTGCAAACTGGGTTACCTGTCGCTTATCCTTTGTCCGTACCCCTCGAATAGCTTTAAAACTCTGCCCATTTTCACTCACCGTCACAGCTTCGGTCGCTCGAATTGCAGAAATGGCTTGATAAGCTGTTTCAATCCCGTCAAATTCAGCGTGTCTGCCACCTTCCTGCACTAACTGTCGCATAAGACTTTCTAAATTTGGAAGCTGATCACTTGTGATGTGATCGGCTTTAGTTGCGGCAAATAGAAGTTTATCAATATTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCTACCTGTAGGTAGCTGAGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.40,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 226391-227487 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAM01000002.1 Bibersteinia trehalosi strain DSM 23101 Ga0244685_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 226391 32 100.0 34 ................................ TGCTGATGTCAATGCAAAATTAATGTCTGCTTTC 226457 32 100.0 34 ................................ TCTTTGTTTGATAATTTTGAATGACAAACAGCAG 226523 32 100.0 34 ................................ TGAATACACAAGCTAACGTTTTTGCTTTTGAAGC 226589 32 100.0 35 ................................ AGCAAAGTTTAGAGAACATTTAGCGAAAGCGGGGA 226656 32 100.0 34 ................................ AATGCTGCTTTAAATTATCAATCATCTTATGAAG 226722 32 100.0 35 ................................ AAATGATTCAAGCGATTTTCATTTTGATTAAGATA 226789 32 100.0 35 ................................ ATTTTTATCTGATGTACCGGAAGAAGCGATCTATG 226856 32 100.0 36 ................................ GTGAATGTTACCTTATGGGGAATAACATTTGCTGCC 226924 32 96.9 34 ..............A................. GTTGGATTACCAAAGAACAAGCCAAGCAGTTTAT 226990 32 100.0 34 ................................ ATCGATATTGAAGAACAGCAGTTAGCCTTGGCGG 227056 32 100.0 34 ................................ GCCAATAGTCGGTGCAGACCACGTCTGTGATGTG 227122 32 100.0 36 ................................ CCATTTATCGTTACATTATCACCAGAAAAAACATTA 227190 32 100.0 33 ................................ TCTGCATTTTGGTATCGGCTAACATACAGCGTG 227255 32 100.0 35 ................................ ATTTTGTGGCTTGCATAAAATACCCCTTTTTCGGT 227322 32 100.0 35 ................................ CATAAATCCGCCGCTTGTGCATAATTGCCAAACCG 227389 32 100.0 34 ................................ TTCGACCCGAAAGGGGATGCTGATATTTTAAAAC 227455 32 90.6 0 .........................C.A...T | G [227475] ========== ====== ====== ====== ================================ ==================================== ================== 17 32 99.3 35 CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC # Left flank : AATCCTCCAATTATTGTGATTCACGGTAACCAAATTGAGCGTTTACCAGATAGCTATAAACGTTATTTATCAAATTATTATCGCAAGAGCCTAAAAATTATCGGCTCACCGATTCGAGTGCTATTCCAAGAAGGTAACAATCCTTTTGCCGGCAAACGCAATAAACTCACACCAAGCCAGCTTCGAAAACGTAAACGCTTGATGAAGTTTATTAAGAAAAATCGGAAGTAACTTATTTGCACCTCAATATCCTTAGTATTGAGGTGCTATTTTCTATTGATTTTCTCAATATATCCTACCGATGTATAATTCGCTATCTCGGAGTTCTCTCCAAAATCGTATTAGGTTAGCGAATTTCATTTTTCCTCAATAATTCAATATGTTAGCCTATTCACGCTATTTTAGCTTTAACCTTATGCTATACTGAATCAGCCTATTTTAGGATATTAGCGAAAAAGAGGTTTTCGAGCCTTGATTTGTAATGCTTTTTACCATAGGCA # Right flank : TACTTTTTTCACAAACAAGAGTCTATTTAGTGCTTGCTCTATATTGCAAAATAATATGTATATAGCAACGTCCCCTTTGATGAATCTAGATAGCATGCGATCTTAGGAATAAGCATTGTAAGTTCTTGTATATAATTGTAGTATACATCATCCATTCTCTGCATAAATTTACGAGCTTTAACATGAGTAAGACCGAATTTATCGCCCATGTTCGAAAATCTAACAAACAGTTACAGTCCGTTTCAAACCATCTTTTAGAAACTGCCTCAATCGCAAGAACTTTGGCTGCTAAATTAGATTTAGCTGATGCCGGGGAATTACTCGGTTTAATGCATGATTTTGGTAAATATTCTAAGAAGTTCCAAACATATATTCGCCACGTAACCGGTATTTTAACTTACGCGGATTTAGATAGCGAAGATGAAAATAATGGAGGGGATCATTCAACTGCAGGCACTCAATGGATTTATGGCCGTTTAAGAAAATTGGGCGCAGCTAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 236518-237347 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAM01000002.1 Bibersteinia trehalosi strain DSM 23101 Ga0244685_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 236518 32 100.0 34 ................................ ACTTTGTAAATGTCAGAGAAATCAATATCACGAG 236584 32 100.0 34 ................................ ATGGTCTACGTCTTTGCCTTTCAGGGCGGCCTTG 236650 32 100.0 35 ................................ TAAAGTACAAGCATTGACACGACTGGATAAAAATA 236717 32 100.0 34 ................................ ACCGCAACATACTGCCAATAGGGTTGTTCGTCCA 236783 32 100.0 34 ................................ TCTTGCGGATAATGAAGTTATCCGCTTCCAGTTG 236849 32 100.0 34 ................................ GGCTTATAGGTTAAACGCCCCACATTGTAATCAA 236915 32 100.0 35 ................................ AACAAAAAAATGCAGAGGTTAAAAATGCTCAAATT 236982 32 100.0 36 ................................ TGCATGGAGTGCACCACCGCCTCCCATCTGATCAAG 237050 32 100.0 35 ................................ ATATCAGGATATGAAAAACGAATACCCCAATATGC 237117 32 100.0 34 ................................ ACCACGTTCAATACGTTCAATAACTTCGCCAATC 237183 32 100.0 34 ................................ CTTTGAACCAGTACCAAAAAATGGGACTGGGGGT 237249 32 100.0 35 ................................ ATCTTGAAGTATATCTGGATAGCGTCTCCAGCCTT 237316 32 68.8 0 ......T..AC.AC....T...CGC......T | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 97.6 35 GCAGCCACCTGCGAGTGGCTGTGAGTTGAAAC # Left flank : TCAACGATGATGATGCTGATTACTTACGATATTTCTTTTGATGATGCCGAAGGGCAGAAACGCCTACGCCGTATCGCCAAACATTGCCTAGACTATGGTATTCGCGCTCAATATTCGGTTTTTGAATGCGATGTCACACCCGATCAATGGGTTAAACTCAAACAAAAACTCCTCGATACTTACAATCCTGAAACAGACAGCTTACGCTTTTACCATCTCGGTAGCAAATGGCGTAATAAAGTGGAACACCACGGCACCAAGAGAGCGGTAGATATTTTTAAAGATACATTGATTTTGTAGTATTGGGAACATCGCTAACGTCTGGTTCTCATCAAAATACGAGGAGACTAGCGATTTTAATTTGTCCTTTAATAATCAATCAGTTAGAAATTTCTCCGAGTACTGCATATCTTATGCTACACTTAAATCACTCCTTTTATTTCAAGTTAGCGAATCACAGAGCGTTAAGCCTTGTGGCACAATGCGTTGAAATATAGGGA # Right flank : TGTTGCATAAGAAAACACAAAACAATCTATATTTTCTGCTGAAGTAGCTAAATATCCGTTATAATGTCGCCATTTTTCATCTTATCTTAGAGTAAAAAATTATGATGATGCACTACTCCTCTCAATTTAACCATGCAAAAGTATTAGTGCTTGGTGATGTGATGCTAGATCGTTATTGGTTTGGATCCACAAATCGAATTTCCCCTGAGGCACCGGTTCCTGTTGTCAAAGTGCAGGAAAATGAAGAACGTGCAGGTGGTGCGGCGAATGTCGCGATGAATATTGCTGCGCTTAATGTGCCTGTCACCTTACATGGCTTAGTTGGGCAAGATGATGCAGGTTCAGCATTAGATAAATTATTAAACTCTCACCAAATTCAAAACCACTGCGTAGCGTTGGATAGCCATCCAACTATCACTAAATTACGCATTCTTTCCCGCCATCAACAGCTATTGCGTTTAGACTTTGAAGAAGGTTTTCATAATGTTGATAGTAGTGAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTGCGAGTGGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1225-190 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAM01000010.1 Bibersteinia trehalosi strain DSM 23101 Ga0244685_110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================================================================================== ================== 1224 32 90.6 34 .............T.........TG....... AGACCGTAAACAAAAGCCAGAAAACCTGGTGAGT 1158 32 90.6 35 .............T.........TG....... CGATTGTGAATCAGTCAAACGCACCAACCGAACAA 1091 32 90.6 33 .............T.........TG....... TCATCATCAACTTGCCCGATAGGTTTAGACTTA 1026 32 90.6 34 .............T.........TG....... AAATTCCCGCTCTTTTAATTTGTGCTCTTTTGCT 960 32 90.6 33 .............T.........TG....... AAGTGTCCAAATATCATCATCAGTTAAAAGGTC 895 32 90.6 34 .............T.........TG....... TCTGTAAAGGTGAATACTTGCTCACCGAGTTAAA 829 32 93.8 35 .......................TG....... TAATGAACTAGGCTCTAACCCAATGAGAGTAACGT 762 32 100.0 34 ................................ GCTCAATCACAAACCAGCCAAGCACCATAAAGGT 696 32 100.0 34 ................................ AATATCAAGAACGTTAGCCGTGATGATGTGTTAG 630 32 100.0 36 ................................ GGCTGGGTAGTGCATACCCATAAATCTCGTTCGACA 562 32 100.0 35 ................................ CGTGCTTTTGAGCCAAAAAAGTAACCTCCGAATAG 495 32 100.0 34 ................................ TCTGGTACAACAGCAGTGATTGTGATTGAGTATT 429 32 100.0 35 ................................ GCCAATTCGCAAAACGAAATCATCAACCAACGCAT 362 32 100.0 110 ................................ TATCTTTGGTAGAATGTTGGAGAACCGCAGGGAGGCAGTCACCTAGTCTCAGCCATCTATGCATGGGGAATAGAAACAGGAATAGGGTGCCAGAAAATTACTTTGTGCGT 220 31 75.0 0 .T......T.T.T-....T.....G......T | ========== ====== ====== ====== ================================ ============================================================================================================== ================== 15 32 94.2 40 GCAGCCACCTACGCGTGGCTGTGAATTGAAAC # Left flank : GAGGAATTGGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCAGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTACGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACCCCCGCTCAGTGGGTAACACTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAAGTACAGTATATTGGCGATATGCTATACTTTTTTCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAAAATGTTATCTAGTAGGGA # Right flank : TATAACAGGGCAAAGAAAGAATCTACAATAAAAAATACATCTTTTCGACTAGATTGTATTATAAGCATATTTCAGCATAACGAATAAAAGATCACCAAGCGGTCATTTTTTTTAGATTTTTTGCAAAAAAGCGCTTGCAAAGGATTTTGAAATCTCTATAATGCACGCCATCGCAACGACGCACTGTTGC # Questionable array : NO Score: 8.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:-0.47, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTACGCGTGGCTGTGAATTGAAAC # Alternate repeat : GCAGCCACCTACGTGTGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //