Array 1 93880-96653 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOMB01000001.1 Erwinia sp. OLFS4 NODE_3_length_180006_cov_49.7735_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93880 29 100.0 32 ............................. CAGTGCCGGGAGGTTGGACGGGAGCCACGGGA 93941 29 96.6 32 ............................C AGTGCCGGGAGGTTGGACGGGAGCCACGGGAC 94002 29 100.0 32 ............................. GAAATTACCATGAGCACAGTAACCGCTGAAAC 94063 29 100.0 32 ............................. CAAAGGGGGGATTTGAAGGGAAAGGGGCAGAA 94124 29 100.0 32 ............................. ATGAACAAGCTACGTTATTTCCGGAGAAAGGT 94185 29 100.0 32 ............................. AATGACCATGCATCCACTGAACTGCATACATA 94246 29 100.0 32 ............................. GCGCGGAACGCTGTTACGAAACGGCAGCGTGG 94307 29 100.0 32 ............................. GTTTTATCCAACGAGGTAAATTTACTGAATAA 94368 29 100.0 32 ............................. CCAATCGAAGAACATTTACACCATCCATGTAT 94429 29 100.0 32 ............................. CTGTATTCAGAGTCGGATCTGGTTCACTTCGC 94490 29 100.0 32 ............................. ATTTTAGAACCCTTTGTGTACCCGGGAACTTG 94551 29 100.0 32 ............................. GGGATGCTGCGCAAGATTGAGGCGCTGCTGGC 94612 29 100.0 32 ............................. GTTATTTTCGAGTTTACTGATAGCGAGGCTGA 94673 29 100.0 32 ............................. GCGAGAACGAGGTGATCGCCGCCCCGCGCGGC 94734 29 100.0 32 ............................. GTGTCCTGACGCCTGAACATTTAATCAAACCC 94795 29 100.0 32 ............................. CGCCCGGCACGGGCTTTTACCATGCCGCAGAC 94856 29 100.0 32 ............................. CCACGATTACTTTTGACTATGAGCATAAATTA 94917 29 100.0 32 ............................. CAACGCCGGTTTTCACGTCACGATTAATCAGC 94978 29 100.0 32 ............................. ACTGTGGCATATATTTTGATGCCGCAGCGACC 95039 29 96.6 32 ............................T TGCACTTCCGCCAGGCGTGTCTGCACAATATC 95100 29 100.0 32 ............................. TCGATGCGGCGATGGCTTACATGAAAAACTCG 95161 29 100.0 32 ............................. GTGGAAATTGAAAAATGACAACTAAACGCGGC 95222 29 100.0 32 ............................. ATTTTTGCTGATGATTTGCACACTCAATATCT 95283 29 100.0 32 ............................. CGGCCTGCGTCAATGTGCTGGGCGTAAGGGGT 95344 29 100.0 32 ............................. TATTAACTATGGAATATGCAAAAACACGCAAA 95405 29 100.0 32 ............................. GCACGATCAACACCGTTAAATCCATTGATGAA 95466 29 100.0 32 ............................. CTACACCATGTTATCAAGTCTGCAGTAGGTGC 95527 29 100.0 32 ............................. ATAATCGGCTAACCAAAATTAATTCAAGGGCT 95588 29 100.0 32 ............................. CGGCTTGGAGATGACAAATGAACAGCAAACCG 95649 29 100.0 32 ............................. AAAACCACAGTAGACGAACGTACCCCACTCCG 95710 29 100.0 32 ............................. TTAACCCACTGATTAAAATGCAAGAAGTAGGC 95771 29 100.0 32 ............................. CGTGAACTCGTGATTGTACTTTGACAGCGCTG 95832 29 100.0 32 ............................. TATCTCGCTCAGCCAGCAAAACCACAGTAGAC 95893 29 100.0 32 ............................. AAAGCTGTACAGGCCAACTGAGCAGCAGAATG 95954 29 100.0 32 ............................. ACCCGAATAAGCTGTTTCCGGGAACAACGTGG 96015 29 100.0 32 ............................. GGCTGGGTATGGATTTAAAGAGCGCGCCTCCT 96076 29 100.0 32 ............................. CTGTTTACCGAGCAGCACCATGGTGCGCACGT 96137 29 100.0 32 ............................. GTTGTGCCTGTGCCGGTAACTGTTGCCGACTG 96198 29 100.0 32 ............................. CTACGTCAGAGATGATGGGCAACTGATAGCCA 96259 29 100.0 32 ............................. AAAATAATCGGCTATTTTTTCTCCGGCAGCCC 96320 29 100.0 32 ............................. GTGTAGACCTATTTGCAGCAATATTCGCTCTT 96381 29 96.6 32 ............................T ACTTCCGTTTTTTCGTCCTCATTTGAGGATAC 96442 29 100.0 32 ............................. CTTCATTCTGTGTTGCTGAACACTCATAGAGT 96503 29 100.0 32 ............................. CCCGCAAAACAGTGCGTTTTGTCGGTAACTAT 96564 29 79.3 32 .....T....TC....C..AA........ AAAAAATCCACTAAATCTTTTCTCAACTTTAC 96625 29 82.8 0 .C.C.......G.A.A............. | ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.0 32 GTGTTCCCCACATGCGTGGGGATAAACCG # Left flank : CTTATAGAAGACGTGCTTGCTGCCGGTGGTATTTCGCCGCCGCCGCCGCCCGCCGATATTCAACCGGTAGCCATTCCCGAACCGTTACCTTTTGGCGATAGTGGCCACCGGAGCTAATCAATATGAGCATGGTAACCGTTGTCACCGAAAATGTACCGCCGCGTTTACGTGGCCGTCTTGCTATCTGGCTTCTGGAGGTCCGGGCGGGAGTGTATGTGGGTGATTTATCGCGGCGAACCCGGGAAATGATATGGCAACAGATAACTCAGTTAGCCGAAAGCGGTAACGTTGTTATGGTCTGGGCGACAAATAATGAGTCGGGATTTGATTTTCAGACGCTGGGTGAAAACCGTCGCCTGCCGGTGGACATGGATGGATTGCGATTAGTCTCTTTTCACCCTGTTAATTATCAATGAGTTAGCGCTCTTTAACAAACTGAAAAAATCGGTAGAATAGCAGGGTGATGTAAAACTCTTTATATTCAATGGTATAAGCTAAGA # Right flank : GTTGGATAATCACCTGCCGTGGTGGTGATGAAAGGCATGTCCTGGTAACGAGGACATAAACCGCTAACTGATTTTGAAAAATAGCCGCGCTGAGGTTGTTGCCTGACTTGTGGCGATCAATCAGGGCGGAAATATACTGCTGATAACCATGACGCTGCAATGACGAAATAATCTGTTGTCAGAGGACGTCAGGGAAAATAGCGTATTGTGTTTGAGCTTGCGAAAAAACACCTGGTGATATTATCGCGGTGTTCGTCTGGCAATATGGCCGGGCAATTAAATCTATTTCCGGTCAGCAGTGATTTTATTGTCCGGGTGGCGTCTGAGCGGTTTTCCCTGGGGTTGGCTGTTTGAGTACTTTGTCACAAGGTCAGTTTTTTCTGCCTGCATAACCGGGGATGATGGTAACGAGTTAACGTTCATTCGTAAGCTGTACTTAAGTGTTGTGATGACTGTGCAGTAGTACTGGTGTTGACTTTTTAATGCATAAGAATTAACTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 102326-103330 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOMB01000001.1 Erwinia sp. OLFS4 NODE_3_length_180006_cov_49.7735_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102326 29 100.0 32 ............................. AGATAGTTTCAGAGTTGGCAAAGCTTGATACT 102387 29 100.0 32 ............................. CACAGGCTGAGTTTACCAGAGCGGCGAATATG 102448 29 100.0 32 ............................. GATGGGCCGCACTTTCAGTTGCCATTTGCGCC 102509 29 100.0 32 ............................. ACCGCCGCCAGGGCGTTCTACACCCGTCACGA 102570 29 100.0 32 ............................. CCCGTCGCCTGCGCCTTGATAACCACGTTCAT 102631 29 100.0 32 ............................. TTACTTAACAGGCTCTTTAACAATATGGATAT 102692 29 100.0 32 ............................. CCCGCAACGCTATGCCTGTTATCGATCCGATG 102753 29 100.0 32 ............................. GACAGGCTGCGCAACACTCCAGGCTTGCGACA 102814 29 100.0 32 ............................. CGCTTTTGCCAGTTTGTTTACCAACAATCAGT 102875 29 100.0 32 ............................. ACAATAAAAATCCTTCCCGTACCAATAGGAAG 102936 29 100.0 32 ............................. TTAGGTGTCAGGCCAGGCGGGGGATCGCGATA 102997 29 100.0 32 ............................. GTAGTTGGCAATGCGCCACCAGAACATAAAGC 103058 29 96.6 32 ...................C......... CAACATTTCGTTGTATTTTTCATAGGCTTTTG 103119 29 100.0 32 ............................. ACAATATTGGCCTCACTGAGTTTGAGATGTCC 103180 29 100.0 32 ............................. ACCTGGATGGAACAGTTGATGGTTCGAAGGCC 103241 29 100.0 32 ............................. ACCTGGATGGAACAGTTGATGGTTCGAAGGCC 103302 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCACATACGTGGGGATAAACCG # Left flank : GATAAAACGGCCAGCGACACCTATCGCTATCTCAACTTTGACCGGCTGTCACAGTACACCGAAAAAGCAGACGGCGTGATTTTTCAGACTGCGGTCTGAGAAACGCAGCGTGTTGCTGCCACCTTACTGATGACTGAAACGGCCTGAGGAGACTCAGGCCGTTGTTTTATATAGTCAGATTGCAGGGTGACGATAACCTATTCTTTCTCCGGATATGGTACATAATTAACCCGCCCGGCAAGATCACCGTTTTTCATTATGTTGCCACTTGCGCAAATCATGCTGAACGATGGTTTGTCCAGTCATTATCGTCAGTTGCTGAAAGCGGAGGAAAGCTGTATTAACAGCAGAGGATGTCTCTTTCCCTGCGTTGCCGTTGCAATTTATGGAAGGATTTATAACCTTCTCCACTATGCCGCTTAACAACCAAAAAATGGGAAAAAAATCGGTAGATTTTTTTTAATAAAAAAAGCATTGTAAATCAGTTGATTATTCTTAGA # Right flank : GCAGGTGAATCAAAAGAAGGCGCTTGCTGGCTGGCAATCGGCTCATGTCGTTGGTGCGCGACATGTCCCCTCGTCGGGTCTGGCAATGACGCGCGCATTAACCCTCTTTTTTACTCCTGCGGGTATCGCTCTGCTGCGTTGCTTGTATGCGATATTGTTCGCCGCTGAATGTGTTAGCAAACGCTGTTTTTTTACCGCCGGACTGCAATAATTAACCGGTCAATAATAATGTGTTCGCCGAAAGGGACGCTTGTGCGACAGAGGGTAGGAGGGCAGCGCTATGGAATATGAGTTATTACGCGATGTCACCGGTCAGCTGAAAATGCGGATGTCGATGGGGCATGAGGCGGTTGGCCACTGGTTCAATGAAGAAGTCAAACAGAACCTGGCGCTGTTGTCGGAGGTGGAGCAGGCTGCTGCCAGCCTTCGGGGTAGTGAGCGACAGTGGCAACGGGTGGGTCATGAATATACCCTGTGGATGGATGAAGAAGAGGTAATTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATACGTGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //