Array 1 57824-56645 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLSD010000003.1 Nocardia brasiliensis strain N-45 NODE_3_length_890832_cov_30.223725, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 57823 29 100.0 32 ............................. CCATGAGACGGTCCCCCTTTCCCGGCTAGCTC 57762 29 96.6 32 ............................C AGGTAGGCGGCGCGGTCGGCCTTGCCCCAGCT 57701 29 96.6 32 ............................T TCATCTTTCCAATATTGGGCGTTCTCGTAGGC 57640 29 100.0 32 ............................. TGGACCGTCGTGAAGGCGTTCCTCGTCGGCTG 57579 29 96.6 32 ............................A CCACGACGGCAGTGCAGGCTCGATCCACGGCG 57518 29 96.6 32 ............................T TCAGTGCCGTCTCCGACGGCAAGACCCGCGCC 57457 29 96.6 32 ............................T CCCAGTTTCGGGCGCACACGGTTCTGGAGGGT 57396 29 96.6 32 ............................C ACAGAACTGGAACAGCTCGAACGGCGGGCATG 57335 29 100.0 32 ............................. GCGACCCGATCTTGATCTCTTACGTCGCCGCC 57274 29 100.0 32 ............................. ACCCGGCGGGGACGTTCGCGTTCATGACGATA 57213 29 100.0 32 ............................. TCTCGGTGATCGCCGAAATCGAAGCTCAAACC 57152 29 100.0 32 ............................. CGCCCGTAGACGACAGCGTTCCTGGCACCGCG 57091 29 100.0 33 ............................. TCCTCGGCGATGACGGTCAGGTCTTCCATATCG 57029 29 96.6 32 .........A................... CGACCGCCGAGGCGACCGCCTTGTGGAGGAGC 56968 29 100.0 32 ............................. GCGGCTCGTGAAACGAAACTCCTGCGCTGGTC 56907 29 100.0 32 ............................. GCCTGCTGATTGCGGGCCTCGGCGGTGTAGTC 56846 29 96.6 28 ...........................T. ATGTGCCCGGGATTGCGGTCGGCCGCGG 56789 27 86.2 32 ........-...T.......-.......T GCGACCGTGTGGCACCCGAACCGAGCTGGCAG 56730 28 75.9 30 ......TT...A.C..-..A......T.. TGGTGGTGTCTCGGCGGTCTCAGAGCACCA 56672 27 82.8 0 T......T..-.........-.......C | G [56661] ========== ====== ====== ====== ============================= ================================= ================== 20 29 95.9 32 GTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : ACGACTTTTGACCACCGTCGTTCTCACCGCCGTCCCCCCGGGACTGCGCGGACACCTCACCCGATGGCTACTCGAAATCAGCCCCGGCGTGTTCGTCGGGAACATCTCCCCGCGTGTCCGAGCACTCATGTGGCAGCGCATCATCGAATTCGTCGCCGAAGGACGAGCGATCATGGTGTACACCGCCCGCAACGAACAACGCCTCGCATTCAAAGTCCACGGCCACGACTGGACCCCCGTGGATTACGACGGCCTGACATTGATGCGTCGCATGACAGTCCCGGACTACATCCCTGCCGCCCAAGCACCTTCCTCCGCCAAAACCCGCGGCACATCCAACCAAGCCGAACACCAATCCGAGACTGTTTGGCGCCGCCGCACAGCCCGACGCAAGTTCAAACCCAAATAGCGGTTCCGTGGATGCCCCCGCACCCAGCACAGACCAAAACAAACCGAATCAAAAATGGCCCTGGCGGTCGCAAACCGCCAGGTCAACAAGT # Right flank : CACGTCGCCCAGGAGGCCGTGCCCACTGCCGAGTCCGCATAGCCCGGAATCCCGCCTCGATCCGGGCGAGTCTAAGTGAAGCTTGCGAAGCGCGTGGTCGGTGAAAGTCCACCCGTACGGGTGGTAGCGCCGCAGTTGGGCTCGGCGGACAATGGCGGGAAGTCTGACTTGCGGTGGAGGGGAGTTGGTCATGGACGAGCGGTCGCCAATTCGACGGCTGGTAAACAAGATTCGTCAGAGATCAGAGGACGACCTCATAGGACTCGGCACAACCAAGCGCCCCGCGGAGCAGCGCATTGGTGAGGCGATAGCGGTAGCACCGCAGCGGTTGCCGATGTTGGGGCATCTGGTTCCGCTCCTGCGAGATCCGTTGGGATTCATGACTTCTCTCCCTGTGCACGGTGATCTAGTCGGTATCGGACTCGGGCCGGTTGCCGCTGTGGTGGTCTGCGATCTGGAACTGACTCGGCAAGTGCTGCTGCGCGACCGAATTTTCGACA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 68163-67280 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLSD010000003.1 Nocardia brasiliensis strain N-45 NODE_3_length_890832_cov_30.223725, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68162 29 100.0 32 ............................. GGTGAGAAGCCCGGCTCGACCGTCGTACCGGA 68101 29 100.0 32 ............................. TGGTCCCAGCCTTCCGGCCACAACCGCAGGGT 68040 29 100.0 32 ............................. GGTCTATGTTGGCACTTCCACTGACCACAGCT 67979 29 93.1 31 ..........G.................T CGGGGCAGCAGGATCACGACCGGTTCGGCGC 67919 29 100.0 32 ............................. CTCTCGCACGAGTAGTTGTAGCTTCAACGACG 67858 29 100.0 32 ............................. CCGGTCTCATCTCGCAGCGGTCGAGACCAACC 67797 29 96.6 32 ............................T CACTCCTGCCAGAGCGGCGTCGCGCTTGTGGT 67736 29 96.6 32 ............................C TGACCTGTGACGCCTGTGTTCACGACTGCGAA 67675 29 100.0 32 ............................. TACCAGTTGCGTTGTCTGGTGTGCGGCGACAC 67614 29 96.6 32 ............................C GCGGTGGTGGAACCGCCCGTCGTTCCGGCGGC 67553 29 100.0 32 ............................. ACGTCGTCGTCGACGACTGCCCGCAGGACCTC 67492 29 100.0 32 ............................. CTCTGCTGCATCGCTCGCCCGCCCTGCTCGAC 67431 29 93.1 32 ............T...............C GGTCGCGATCGCCGCGCTGGCCGCACCCTGGA 67370 29 100.0 32 ............................. TGACGCAGGATCTGCGCGAGCGCCAAGGTGAT 67309 29 72.4 0 .C............C.......A.CCGTA | C [67284] ========== ====== ====== ====== ============================= ================================ ================== 15 29 96.6 32 GTGCTCCCCGCGCATGCGGGGATGATCCG # Left flank : TCCGCTGGGCAAAGCTGCCGAACTGCTGCTGGTCGAGTGCTCCCCGCGCACGCGGGGATGATCCTGAAACCGGCCGCAGCGTTCCTCTCAGGACGAATCGTTCGATCGGGAAGGAACTGACCATGAGGTACGTAAAAGTCAACTGGCACCACGACTTCGACGAAGAACCCATCACCTACTTCCACGAAGTCGGCGACGACAACTACGAGACACGCAGTGTCCAGCTCTACCGCGACGGACACCGCGAATGGGCAGACGACAACCATGAAACAGCTACCGCGGGACTAGCCGAGATACCCATCGCTCCAGTCGATGAGATCGCAAGCCAGCCCGAATTCGACGCTACCGAAGTACCACAAGACGAGTTCGAACGAGAATGGGCCAGAGCGCGATGAGCTAGCGGAGAAGGCGAGAAGCGGCGAAGTCTTGTGGGCGCTGACAGCCGGGAGAAACCGATCGAAAAGTCGTCATGCTCGAAGAGAACTCCCTGGTCAACAAGT # Right flank : CCTCGCCGATGGGGCGAGTTGGTCAATTTGTGCTCGCCGTGTTGGGTGTAGCGCGTGCTGTGCTTGGTGACGTCGGTAGCCGAGGTCGGAGAACCGGTCAGTTGGTCATTTCGATGTTTCTGTTGTGCATTGCTGGAAGTGCGCTCATGTAGGTGGTTTCGCGAGTAGCGTTTGCTGGAAGTTGTTGAGCTTCTGGCTATTCCGGAGGCGCAGCAAACTTGTCGGTGGGAGATGCGACAGTGTTGTGCGTTCCCGGGATTCGGGGCGGATTCTTTTGTAAGGGGGTCGGTCTTGGTGTTGAGCGAGGCTGCTCGATCGGTGTGGGCGAAGTCGCCGAACACTGTTGGTGAGTGGTTGCCGCTGTGGCAGCACATGGACGATTCTGCTGATGTTGCCGGTCATCTGTTCGATCGGTGGCTTGCGCCGAGTGTTGTCGAGCTGCTGGTGGAGGAGCTCGGTGGCGGCCGGGAGGCGGCTGGGTGTGCGGTGCGGTTCTTGGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 69114-68598 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLSD010000003.1 Nocardia brasiliensis strain N-45 NODE_3_length_890832_cov_30.223725, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69113 29 100.0 32 ............................. CGGATGAGGATCGGTGGCCGAATCCTGGGCCG 69052 29 100.0 32 ............................. GCGGCCCGGGCCCGGGATGGGTTGGTCGAATT 68991 29 100.0 32 ............................. GTGGGCGCGGAGTTCTTCTTTACGCGCGATCC 68930 29 100.0 32 ............................. GCCGAGAGTGCTGCACGAGACGCCGCGGTCGC 68869 29 96.6 32 ............................T CACCCGGCACCCGCCGATCAGCAGGACATGCC 68808 29 96.6 31 ............................C CGAGCTGAGGTAGTTTTCTCGACGTCCGGTC 68748 29 100.0 32 ............................. GCAATCAACGAGGCGGTGCGCTGATGGGCAAG 68687 29 96.6 32 ..............G.............. CTGGGCAAAGCTGCCGAACTGCTGCTGGTCGA 68626 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 GTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : TACTCGAACTCGACGAATCCTTCGAAGAAGGCGTACGCCGAGAAGTCGCTGAAGAAACCGGACTGAACGTCCACGTCGAGCGTTTAACCGGTGTCTACAAGAACTTACAAGGCGGCACCGTCGCGCTCGTGTTCCGTTGCGCTGCGGAAGGTGGTAGCCCGCATCCCACCGCGGAAGCGGTCGAGGTCAAATGGATGACCGCCCGCGAAGTCCAAGACGCCATGGTGCCAGCGTTTGCCGTCCGGGTCCTCGACGCGCTCGACGAGCAGGGGGCTCGGGTAAGAGCCCACGACGGAGTGAACCTGAAGTAACTGAGCCGCGTCGAGTCCTCCTCAGTGTGTTCGAGCGATGCCCAGGCTTCAAGCCACAGGATCGTGCGAGGCGGCGCTGGTGAGTTGTCCTTCGTCTAACTGCTGGCTGATGTCCGTGCGCGGTATTCGGTTCGTAGAAAACCGATTGAGATACCGTGATTCCGGCTGAGAACTGCGAGGTCAAGAAGT # Right flank : GAAACCGGCCGCAGCGTTCCTCTCAGGACGAATCGTTCGATCGGGAAGGAACTGACCATGAGGTACGTAAAAGTCAACTGGCACCACGACTTCGACGAAGAACCCATCACCTACTTCCACGAAGTCGGCGACGACAACTACGAGACACGCAGTGTCCAGCTCTACCGCGACGGACACCGCGAATGGGCAGACGACAACCATGAAACAGCTACCGCGGGACTAGCCGAGATACCCATCGCTCCAGTCGATGAGATCGCAAGCCAGCCCGAATTCGACGCTACCGAAGTACCACAAGACGAGTTCGAACGAGAATGGGCCAGAGCGCGATGAGCTAGCGGAGAAGGCGAGAAGCGGCGAAGTCTTGTGGGCGCTGACAGCCGGGAGAAACCGATCGAAAAGTCGTCATGCTCGAAGAGAACTCCCTGGTCAACAAGTGTGCTCCCCGCGCATGCGGGGATGATCCGGGTGAGAAGCCCGGCTCGACCGTCGTACCGGAGTGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 73690-72989 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLSD010000003.1 Nocardia brasiliensis strain N-45 NODE_3_length_890832_cov_30.223725, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================== ================== 73689 29 96.6 32 ...............A............. CGCTGGACGTGCTCGCGCTGCTCGACGATCGC 73628 28 86.2 158 ...........T........-......GT TCGATTGCTGGAACGATGCCGGAACCTAGCGTCGGTCGATTATTCGCCTCCATGAGTTGTCCTTCGTCTAACTGCTGGCTGATGTCCGCGCGCGGTATTCGGTTCGTGGAAACCGATTGAGATACGGTGAGTTCGGCTGAGAACTGCCAGGTCAAGAA 73442 29 100.0 32 ............................. ATGAGACGGGACATGCTGCGCAGTAACGAAGG 73381 29 96.6 32 ............................A TAGCGAGTAGTAAGCTTGCCGCTGGCCGTTAT 73320 29 100.0 32 ............................. CAATCGAAGTCAGGGCCGATGTGATGCGACAC 73259 29 96.6 32 ............................C TGTTTGGTGACCGTCGGCGGCTTCGTGAGCAC 73198 29 100.0 32 ............................. ACACCGCCCGCCGAGGGACGAGGAGCCGCCGG 73137 29 96.6 32 ....................C........ CGCTCGCGTTGATCGAGCAGGCAACCGACCTC 73076 29 100.0 32 ............................. GACGCACATCCCCAGCTCGCCGAGGCGCAAGC 73015 27 86.2 0 ...........--.............TG. | ========== ====== ====== ====== ============================= ============================================================================================================================================================== ================== 10 29 95.9 46 GTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : TGCCGAGAACTGGCCAAACCGCACGCGTGGCCGACTCGCAGTCGCCCAAGTGGCCAGCGGTAGTTGCTCGTTGCGTCTGGTCCGGACCAGGAGGCCACCTGTCCCCTCCGTAGCAGACGCTCTTGATTGCTGACCACGACTTGTCAATCATGCGCGCTCCCTTCGAGTCTTCCGCTGCACCGGACGTACGGTTCACGAGGGGACACACGCGCTAAACTTGCCAATCGACCTGCGAAGATGACCGCCCGGCCAGGCGAGTCGATGACCTTTCGTCCCTCGATGTCATCCTCGCTGTGACCGTCAACCGTCGGAGGTTGCCGGTCAGGGATGAACGGGCGCGACATCGTGAAATCTCGCGCCTGCGGGCGGCATCCGTGTGCCGAACTAACAACTCGTGAACCGGCATCGTGCGAGTGTCTTTGAGCGCCTGTCTCGTCGTGGCGTGGTACTGGCGCGCCATTGCCCCTAATTTGGGTAGAGAACCCTGCAGCTCAACAACT # Right flank : ACGGCAGGTCGATCAGTCGAGCACGCACGCCACGGTCGCGAACCTCTTCGACCGTGCTGTTGATCTCGGTGCCTGCGTCATTGACGACGATCACCTCGACCGCACCGGAGAGACCGCGTTGCTGGGCCACGCTCGACAGCGCTGACCGCAGCAGCTCCGGACGGTTGTAGGTCGGGATCACCACACTGACCAGCGGCGTCACGACCGACTCACCTCCAGCCCAGCAGCTTCCAACAGCTCGGAGGGGTCGCCGCGGTGATGCCATTCGACGACCCGCGCTCGCTCCGCGAGCCGGCGGATGAGCCTGTGCGCGTCCGCCTGGTACTCCTGCACATCGCGTTCGTGGCGAGGTAAATAGCGCTGGTTGAGGTTGGGATCGAACATCCAATCCGTGCGCACGTGTGGCATCAGCGCACTCACCGGATCGTCGACCAGCGCACATCTGGCGGTGTCGTTGGTGTAACTGGCCAAGACGACCAGGACATTCGGGCCCGTGCCGT # Questionable array : NO Score: 4.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-1.36, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //