Array 1 20361-20595 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZT01000027.1 Streptococcus halichoeri strain S258 NODE_27_length_20768_cov_87.903207, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 20361 36 97.2 30 ............................T....... GACAGTAGAGGCAATCATACTCAAAACGGC 20427 36 100.0 30 .................................... AATTGCTTGACGAAGAAATGCCATTCTTCA 20493 36 100.0 31 .................................... CACAGTAGAGCGGAATTTGAGCTTGCGAAGG 20560 36 86.1 0 .............................TTG..CG | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 95.8 31 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : CTATCGTTCGCGGGGAAGGGCTCACGCAGATGAAAGGATGTAAATGTTCCTTTAAAAGTTATGCCGTGCTTAAAACCAGTCAGATAGTTCAAGTTAGCCAAATTTAAAGAATAGTGATGTGATAGGTAAAGGGAAAATGAGTGAGGCGGACCGTAAATTAGGCGATTTTTACTGTGCTTATCAAGGTAAAAATCGCTCATGCTCCGCCAATTAACCGTAGAGCTGCCGCAGAGAGAATAAAACAAAGGTGGATTCTCAAAATCAGTCCGCCTAGAAATTAATCTGAGAAAGCTGAAAAAGCAGCACAGAATTTTTGCTTACTACAGCAACTAACCCCAATATTGTTTGAGACTTAATCGGCCGCCAAAAACTTCTTAAGCCAATTGATTTCATAAGGTTTTTGCCGTATAATAGTGCTATGAAAGGACGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAAATGTGGACAAACCCTGTCTACGAG # Right flank : AAGTGTTAGCTCCGCCTTTCCCCTTTTGATTGCTAAAACTAAAAATAAGGTAAATTCCCAAAGTAAGTTCCAGTCTCATCAAACTGGCACTTAGTTTGGGAAAAACGCTTAAAATCAACAGAATTTAGTCCCGGACCAAGTTCTGTTTTTTTGTCAATATCGCTAACCAAAGG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 1 1217-1649 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZT01000037.1 Streptococcus halichoeri strain S258 NODE_37_length_1674_cov_72.680672, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1217 36 100.0 30 .................................... AGGCGAAATGCCGCACATTGTCTTTATTAA 1283 36 100.0 30 .................................... ATTAGCCGGTATTGTTGCTGCATTTTCAAT 1349 36 100.0 30 .................................... CAAACACCATAGCGTTTGCGCGATTTTTCC 1415 36 100.0 30 .................................... TTCGTCTTGGATTTTTTCGAGCTCTTTATC 1481 36 100.0 31 .................................... CCTCGTTTAGTGTGTACTCGCCATTTGAATC 1548 36 100.0 30 .................................... TGATTTAAATTCTTACGGCGCTAGAATCAT 1614 36 97.2 0 .C.................................. | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 99.6 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AAACTAGCAACAGACCAAACGTTAATCTCTCGAAAAGTCCGTTGAAGCATCCCAGTAAGCAGTAAAAACTGAGAATATAAGAGCATATAAATTGCTTTGGGGATCGATACAGTGTCTTAGACCATAGTCCAAAGCAAGTATTTGTCATCCCCCGAATAGACAGAAAAAAAAGAGTCATGTATCCAATCGTTCATATTTCTCCTGATAAATCGATTGCTGCCATCAATCAAGCCAAGCATTTGGAATACAAAACACCAGCCAAATGCTAGCATAGCAGCTGAGGAACCAGAGATTAGGGGTTTAATAAAAATTTTTGAACCTAAACTGAAAAGGTGCTGACGATTAATCAGCCGACAACCATGATAGTTAGCCTTCTTAACGCATTGATTTCGCAAGAATTTTGCCGTATAATAGTGCTATGAAAGGACAATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : TCACCAAGTTACGGCAACAAAACTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 1 85478-85975 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZT01000008.1 Streptococcus halichoeri strain S258 NODE_8_length_86153_cov_76.291923, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 85478 36 100.0 30 .................................... TTTTTGAATCGGCCAATCGTACCACGTTTT 85544 36 100.0 30 .................................... TAGCAGGTTGTTGCAAGTTTTGCGAAGAGT 85610 36 100.0 30 .................................... AATATAATCATAAAGAAAAACAACAAACAG 85676 36 100.0 30 .................................... ACTTGTTGTGTCCATCAGCGCTTTAAGTGA 85742 36 100.0 30 .................................... AGGCGAAATGCCGCACATTGTCTTTATTAA 85808 36 100.0 30 .................................... TGATTTAAATTCTTACGGCGCTAGAATCAT 85874 36 97.2 30 .C.................................. TCACCAAGTTACGGCAACAAAACTTGTTGG 85940 36 83.3 0 .C...........................TTG..CG | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 97.6 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : ACTAGCAGCAACTATAACAGAATTAATCGCCTTTGAATGTCTAGAGAACGAATTGGACTTGGAATATGATGAAATTACTATCTTGGAACTTATAAAGGCTTTAGGGGTTAAGGTGGAAACACAGAGTGATACTATTTTTGACAAGTGTTTGGAGATTTTACAAGTTTTCAATACCTGTCTAAAAAGAAACTCTTAATTTTTGTGAATTGCGGCTCCTATCTTACCAAAGAAGAACTCTTGAAGCTGAGAGAATATATTGAATTATCTCAGCAAACGGTCCTCTTATTAGAGCCAAGAAGTTTGTACGATATTCCGCAATATGTTCTAGATGAAGACTATTTTTTGATAGCAGAAAACATGCCATAGTCTAGCTTCTAAAAACCTTGATTTCATAAGGTTTTTGCCGTATAATAATGCTATGAAAGGGCGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : AAGTGTTAGCTCCGCCTTTCCCCTTTTGATTGCTAAAACTAAAAATAAATTTGAATCATTCCCGTAGTTAGTTATTCCATAGCCATCATAGCTTTTCAAACCCTCAAAAAGAAAAATCGCCACGTTAAGTAGCGATTTTTCCCTTTTGTGAGCCTCAATGAAACGTCAAAGCGTTATA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], //