Array 1 19388-20350 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXWY01000028.1 Staphylococcus microti strain DSM 22147 contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 19388 36 100.0 36 .................................... AAATTTTGTCAAAGAAATGGAAAAGGAAATTCTAAA 19460 36 100.0 38 .................................... CATTTCTTCTAAAAAGATATTTTTAAGTCATGGCCTAG 19534 36 100.0 32 .................................... TCCTATACTTTAAACTTAAAAACAAAACTGTA 19602 36 100.0 34 .................................... AATAATATGAATAACATTATAGATAGTATTTTAG 19672 36 100.0 34 .................................... TGTAAAAAGAATGTTTCTGTTGAATTTAGTAAAT 19742 36 100.0 36 .................................... ACGTTTGTTTTTTAATTGCTTTTGATATTCTTTATT 19814 36 100.0 36 .................................... TATCTTATGAAATTATTTATTCAATAGCTTTATATG 19886 36 100.0 36 .................................... CGATTTTTCCGCCGTCTTTATAAATGAACCAAACAT 19958 36 100.0 35 .................................... TTTAAGTTGGTTGTTTTTCATTCAAAAACTTGTTG 20029 36 94.4 34 ...........C..........A............. TCATAATTAATGAAATCGAGTGGATTTATTACAT 20099 36 100.0 38 .................................... TCTGATAAATTCAAGAAATGCTGTTTTTGGATCTTGTT 20173 36 100.0 36 .................................... TAATTAGATGGTTTAATATAATCTAAAGAAAGCCAC 20245 36 94.4 34 ...........C..........A............. CCGAATCCCATTAATAAAAAGTTGTCTAGTCGAT 20315 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 14 36 99.2 35 AATAGAGAAGAACCCCATCAAATAGGGGACGAGAAC # Left flank : ATCAATTTCTAATTCAAAACAACTATAACTTGCCATCATGATGCTCCTCTCTATATATAAGCATTTAATAGAATATGGTAGTTTATAATGAAATTATACAACTAAATCACTAAATATGTTAATCATCAAAAATTTTTAGTGTTTATATTAATAGAGAAGTGGTTGAATCTAGACGAATTACATCAGTGAATCTGTGGATTTATGGGTATTTATAGCTAGGGTCTTAAAATATTTGAGAAAGTTATGAGTCAATGGACATAGGCAGAACAGTTCGAATGACATATAGAAGGATTCTATTATTTTCATTAATTATCAGTTATAATACTAGAGATAATAAGTTTTAGTGATTTCTTTATATTTAAAGTGAATTAACGAGAAATCACTCTATTATTTGCCCATATTCAAGACAAATAGTAGAATAACTGAGAGCAATTGGCCGTTAATTAAGACAATGAATAATGGCCTGAAGCATTGAAACTATAGGATTAGTAGTATTATCA # Right flank : CTCGAACATTGGTTCCATCGAGTCGCCATTGACTTGTAAATAGAGAAGGGGCTGGGACATAAGGAAAATCATCCTAAATAATTAGGGAAAAAGCACTAATTGGCAGTAGGTGTCTGAAGTGAAAATATGTTTAAAAAACTTTTTATACTTCTAGTCACCCTTGCTGGGGCGAGACGACGAAAGCTTTTTGTAACAATAAGCTTTCTGTCCCGCTCCCTAAGACATCTTTAAACCTTCTAATACCATGTTTTGTATTGAATCAGATGATACAGAGAGGAAAATGTTAACAGTGATTAAAAAACGCTTCCAAAAAGTTTGGATATTTTATAAAATAAAGGGGTAGATTGCTTTAATAGGGTGAATGGAGGAAATGAATGAAAGATATTCTTTACGTTGAGCATCCATATTTTGTTACTGCTAAAGAGGATAGTGTGAAATTTAAAAATATAAGAGATAAGTCTCTTAAATATTTTTTGTTCAGTGAAATAGAAGCAATAATA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGAGAAGAACCCCATCAAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.00,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 11210-10149 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXWY01000053.1 Staphylococcus microti strain DSM 22147 contig_58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================================================================================================================== ================== 11209 33 84.8 138 .............A.............TTG.A. AAATAAGGTAGGAAAACGGCAATTAAAGTTGTTGTTTCCTACCTTGTATTTTTTATCAATCATATGCTGTTTTATCTCCATTTAGATCAGTTTATACTGATGCTTTATTTAATGACTTAAGTTATAATTGTTCTAGAG 11038 33 100.0 33 ................................. TACGTACAAATGAGACAGTTTACGCTTATAAAT 10972 33 100.0 33 ................................. TACTTCAATGTTGGTTTATCTGGAACACTCGCT 10906 33 100.0 33 ................................. TACTATTTATGTTCTTATACTGATATCAAAATT 10840 33 100.0 33 ................................. TACATCCGACCGACAAAACCAAAGACTAACGAC 10774 33 100.0 33 ................................. TACTTGAATAACCCGATGGGTCATCATCAGCTT 10708 33 100.0 33 ................................. TACCCATTTAACTGTCGTATCAAACGTGTTTGG 10642 33 100.0 32 ................................. TACTGATAATCGTGGTGGTAATTTTAAATATA 10577 33 100.0 33 ................................. TACTCATGTTTTTAGGGTCGTTTGCTGCACCAA 10511 33 100.0 33 ................................. TACATCGTTGGAGAATCATCCATTTAAACGAGT 10445 33 100.0 33 ................................. TACTGAAGCCCCCAATAAAAGAGTGGGAGCGTC 10379 33 100.0 33 ................................. TACATTTTTAGTATTTTAATTGGTCGCATGAGT 10313 33 100.0 33 ................................. TACTTATTTTCATAGGAATCTATGACATAAATA 10247 33 97.0 33 .....................T........... TACGAACTACTTGAAATGTATTATGAGTGGGCG 10181 33 90.9 0 .....................T.....A..C.. | ========== ====== ====== ====== ================================= ========================================================================================================================================== ================== 15 33 98.2 40 GTTTTAGTACTCTGTAATTTTAGGTATGAATGA # Left flank : AATTTTAAACTTAAGCATAATTCATGATGATGCACAAAATTCAGGAGCAAAGAAACGCTAAAACACCACCTATTCTATTGAACTCAGAATTAATGATTTTGTCAGTAATCTGTTTTGCTCCTTTAATTTATCAATTTCTTCATTTAAAACATGTACTTCTTGTTGCATTATTAAGCCATAAAATTTTTGATTGGCTAATTCAGACTCATTTTTAAATTCTGATTGCTTTGTATCCACTTTTGTTAAGTAACTGACCATGCTTTTAAATTCATACATTAATAGTTCTTTTTGTTTTACCATTTATTAAACCACCTTCGCTTATTAGTAAAATGTAGTAACGAAATAAAAATCCCTACTTATACCTATTTTTATAAAATTATAAACTTTAATTCAAACATTGACAAGCTTTATTCTATAAATTTCGTATGTGCATTAATTGAACTTATGTTATATACTGAGACTCATAGTCTGATAAACACCATTGATTATCAGGTATAAGT # Right flank : TACTCAAAGTCCGTCGATAACCAACCATCCAATTCAAACACTATATAACCCAACGAACCCCCACCTAACACTAACTCGTCAGATGGGGGTTCGTTTTCTCTATTTACAATGTAATAAGTCCTTCTTTAATCATTTCTTCAACGGCACGTGTGACGGCAAGTTTGACATGTTCGTATGTGAGACCACCTTGAACGTATACTTCATATGGTTCACGTATTGGGCCGTCTGCTGATAATTCAATAGATGCCCCTTGAACAAAGGTACCTGCTGCCATAATAACGTCATCTTCATAACCTGGCATATAGCTTGGTTCTGGGCTGAAGTGTGCGTTAATTGGCGATGCATGTTGAACGCTTTGACAGAATTTGATCATCTGCTCTGCATTTTCAAATGATACGGTTTGAATCAAGTCTGTACGTGGCGTATCAAAACTTGGTGTTGTTTGCATGTTACAACGTACGAGTAATAAGCTTGTGAACAATGCGCCTTTTAAACTTTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAATGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 56418-55527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXWY01000132.1 Staphylococcus microti strain DSM 22147 contig_179, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 56417 33 100.0 33 ................................. TACCAAGTAGCGTTGATTCATGCAATGCATAGA 56351 33 100.0 33 ................................. TACTTTTTTATTGTTCCACCACGTAGCTTTTGA 56285 33 100.0 33 ................................. TACCGTCACAAAAGCGGATTGATTCATTGGCAT 56219 33 100.0 33 ................................. TACCTTCATGCTCTACCTCAACTTCTTTGGCAT 56153 33 100.0 33 ................................. TACTAACAGAACAGCAACAACATGATGTTTTTG 56087 33 100.0 33 ................................. TACACCAGAAGAACCAAGTAAACCAGGTAAACC 56021 33 100.0 33 ................................. TACCGAATACAGCCCTTAATGCTTCTCTCACTT 55955 33 100.0 33 ................................. TACTGGCAGCGGTAGCTACTACAGTGGATGCAA 55889 33 100.0 33 ................................. TACAATTTGTGAGAAATATGTAATCCAAAATGT 55823 33 100.0 33 ................................. TACTTATCAGTCCACACTTCACTAAATTTAACA 55757 33 100.0 33 ................................. TACAAATCGTTTATCATAGCTTTTTTAGGTTGT 55691 33 100.0 33 ................................. TACCAATAAAGAAGAAAAGGATGACCCGACAAC 55625 33 100.0 33 ................................. TACAAGCAAACCTTTAACAATGTAATTTAGTTC 55559 33 90.9 0 ...........................AG...G | ========== ====== ====== ====== ================================= ================================= ================== 14 33 99.4 33 GTTTTAGTACTCTGTAATTTTAGGTATGAATGA # Left flank : TCGTTTTGTGACGCAATTACAATATAAGGCTGATTGGTACGGACGGAAAATCATTAAGGTAGACAAATGGTTTCCATCTAGTCAAATCTGTTCAAAATGTGGGCACAAAGACGGCAAGAAATCTCTTGAAATCCGAGAATGGACTTGTCCTGTTTGTCGTACACATCATGATCGAGATATCAATGCCAGTATAAATATATTGACGGAAGGTCTAAGAATAATGGCATTAGCTTAAGTAGCATAAAGAACCGTAGGAACTACGGGGATAGCTTGGTAAATAAGAGACACCGCTGTTAGTAAAGCAATAAACTAGCAAGTACGCTCTATTCCCAAGAAGCTCCCACTTCAAGCGTTAAAAACTTTAGGTTTAGCTAAGTGGTGAGTAGTTCACAACCAACTAAAGAAGTCGAAATGGCAAAATACTATTTAATGTTTCAATCGCAAATGTTCAATATTGTTAGATGAAAATCAAAAAAACTTAAGGTATAATGTTGCTAGAG # Right flank : CACCAACTTCATTGTTGTAGATGTGTTTGAATGGCTAATGAGAGTGTATATTAAAAAATGTAATCATACGATTTGTGATGTGAAAATATAGATTAAGTCAAAATCTTACGAAGTTACAATACATAATCATAGACTCAATTGATGTAAATTTACATTTAATTTGGAGTGGTAAAGAAATTTATTGGTTGTAGTGTGAATAGGGTTTGTTCAGTAACATAAGTTATAAAGACCTAATTATAAAAGTGAAAGTTCTTTATATCAAGTGAGGAACCTATTTTACACCACCCAAAGAAAAAGTGGAATAAAATGTATGTAAAATATTTAGACAAGAAAATAAAAATTGTTGACATTGACAATCAGATATTTATTGGAGTGCTTGAAGATATTCAGAGAGATTATGATGCAGAAGAGTATACTGAAGAGCTAAGTGTCTTATTAGACAATGGTGTGCTTCTTGGTATTACATCTAATGAAATTAAATCAGTCAAAGTAATTTAATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAATGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //