Array 1 1823-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFSL01000104.1 Thermophagus xiamenensis strain HS1 Contig104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1822 30 100.0 37 .............................. TTTTCATCGCCAATTTCTGTTTCAATTTTTGTATTAT 1755 30 100.0 36 .............................. GTTCGTATGAACGGGTTCTAAGCTTTCCTTCAATAT 1689 30 100.0 36 .............................. GTTCGTATGAACGGGTTCTAAGCTTTCCTTCAATAT 1623 30 100.0 36 .............................. GTTCGTATGAACGGGTTCTAAGCTTTCCTTCAATAT 1557 30 100.0 36 .............................. GTTCGTATGAACGGGTTCTAAGCTTTCCTTCAATAT 1491 30 100.0 38 .............................. AATTATGCCAGCAGCGAGAGCTGCTATACCTGCGATAA 1423 30 100.0 34 .............................. TTATCTGAGAATTATGGTTGTTATGGTATAGACA 1359 30 100.0 34 .............................. AAGTTGGTCTCGCATTCAGCTATATGGCTACCAA 1295 30 100.0 34 .............................. AAGTTGGTCTCGCATTCAGCTATATGGCTACCAA 1231 30 100.0 34 .............................. AAGTTGGTCTCGCATTCAGCTATATGGCTACCAA 1167 30 100.0 34 .............................. AAGTTGGTCTCGCATTCAGCTATATGGCTACCAA 1103 30 100.0 34 .............................. AAGTTGGTCTCGCATTCAGCTATATGGCTACCAA 1039 30 100.0 34 .............................. AAAACCAGGCAAAAGATGTAGTTAATTGCATTCT 975 30 100.0 34 .............................. AAAACCAGGCAAAAGATGTAGTTAATTGCATTCT 911 30 100.0 34 .............................. AAAACCAGGCAAAAGATGTAGTTAATTGCATTCT 847 30 100.0 34 .............................. AAAACCAGGCAAAAGATGTAGTTAATTGCATTCT 783 30 100.0 34 .............................. AAAACCAGGCAAAAGATGTAGTTAATTGCATTCT 719 30 100.0 34 .............................. AAAACCAGGCAAAAGATGTAGTTAATTGCATTCT 655 30 100.0 35 .............................. AAAAAAAAGGACTACGCTAAAAAAAGTAAAAGCTG 590 30 100.0 35 .............................. AAAAAAAAGGACTACGCTAAAAAAAGTAAAAGCTG 525 30 100.0 35 .............................. AAAAAAAAGGACTACGCTAAAAAAAGTAAAAGCTG 460 30 100.0 35 .............................. AAAAAAAAGGACTACGCTAAAAAAAGTAAAAGCTG 395 30 100.0 34 .............................. ATTTAATGCAAAGTGCTAAAACGATGCTTAATTT 331 30 100.0 39 .............................. GTTACAGACTTGTTGGGGTGGCAGGGATGGAATACGCTT 262 30 100.0 39 .............................. GTTACAGACTTGTTGGGGTGGCAGGGATGGAATACGCTT 193 30 100.0 35 .............................. AAGAAATACTGATGGCACTTACTCTTGATGACAAG 128 30 100.0 36 .............................. ATGTGCCCACTTCAGGAACCAACGCCGCCGCATTGC 62 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 28 30 100.0 35 GCTTCAATCGAACCATAGTGGAATTGAAAT # Left flank : CGAACCATAGTGGAATTGAAATAAGTTGGTCTCGCATTCAGCTATATGGCTACCA # Right flank : TTGCTGTAATATACATTTTGTTAACCATGCAAG # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:-3, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATCGAACCATAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 257-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFSL01000103.1 Thermophagus xiamenensis strain HS1 Contig103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 256 25 100.0 41 ......................... GTCTGCTGGCTTAATATCATAAGAGGATTAAAGCCTGCTTC 190 25 100.0 39 ......................... TTTGCAGATTGATAACAAAAGTATTTCCGGACTTGCTTC 126 25 100.0 44 ......................... GTTACAGACTTGTTGGGGTGGCAGGGATGGAATACGCTTGCTTC 57 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ============================================ ================== 4 25 100.0 42 AATCGAACCATAGTGGAATTGAAAT # Left flank : | # Right flank : TAAGCAAATAAAGCTTTTTCCCGTTTGCTTATC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCGAACCATAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 7009-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFSL01000113.1 Thermophagus xiamenensis strain HS1 Contig113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 7008 30 100.0 37 .............................. GGGAGTGTAAACCGTTTCATCCTTTTTTTGCTTACAA 6941 30 100.0 35 .............................. TGGTGCTTCTTTTTATTATTGTTTATGTATTGGGT 6876 30 100.0 35 .............................. TGGTGCTTCTTTTTATTATTGTTTATGTATTGGGT 6811 30 100.0 35 .............................. TGGTGCTTCTTTTTATTATTGTTTATGTATTGGGT 6746 30 100.0 35 .............................. TGGTGCTTCTTTTTATTATTGTTTATGTATTGGGT 6681 30 100.0 35 .............................. TGGTGCTTCTTTTTATTATTGTTTATGTATTGGGT 6616 30 100.0 35 .............................. TGGTGCTTCTTTTTATTATTGTTTATGTATTGGGT 6551 30 100.0 35 .............................. TGGTGCTTCTTTTTATTATTGTTTATGTATTGGGT 6486 30 100.0 35 .............................. TGGTGCTTCTTTTTATTATTGTTTATGTATTGGGT 6421 30 100.0 35 .............................. TGGTGCTTCTTTTTATTATTGTTTATGTATTGGGT 6356 30 100.0 35 .............................. TGGTGCTTCTTTTTATTATTGTTTATGTATTGGGT 6291 30 100.0 35 .............................. TGGTGCTTCTTTTTATTATTGTTTATGTATTGGGT 6226 30 100.0 35 .............................. TGGTGCTTCTTTTTATTATTGTTTATGTATTGGGT 6161 30 100.0 35 .............................. TGGTGCTTCTTTTTATTATTGTTTATGTATTGGGT 6096 30 100.0 35 .............................. TGGTGCTTCTTTTTATTATTGTTTATGTATTGGGT 6031 30 100.0 35 .............................. TGGTGCTTCTTTTTATTATTGTTTATGTATTGGGT 5966 30 100.0 34 .............................. TTAATACATGTGTTTTCATCAATTACATATTTTT 5902 30 100.0 37 .............................. TAACAAATCACTATTTAATTTGTATAAATTAAATAAA 5835 30 100.0 34 .............................. GGCAATTCAAAAGAGCAAAAAAGAAAGCGCATAA 5771 30 100.0 34 .............................. GGCAATTCAAAAGAGCAAAAAAGAAAGCGCATAA 5707 30 100.0 37 .............................. GCTTCAGTTTTTACCCAATTCTTATCTGGGTAGTAAG 5640 30 100.0 35 .............................. AATTGCCTGTATATTCTCCCTCGTGGTCTTCTATT 5575 30 100.0 34 .............................. ATACAAAGAGGTTTTTTCGGTCAAGGATTGGGAA 5511 30 100.0 35 .............................. ATGCCCGCTCTATGGGCATTGAGAACCGTCAAGGA 5446 30 100.0 35 .............................. ATGCCCGCTCTATGGGCATTGAGAACCGTCAAGGA 5381 30 100.0 35 .............................. ATGCCCGCTCTATGGGCATTGAGAACCGTCAAGGA 5316 30 100.0 35 .............................. ATGCCCGCTCTATGGGCATTGAGAACCGTCAAGGA 5251 30 100.0 35 .............................. ATGCCCGCTCTATGGGCATTGAGAACCGTCAAGGA 5186 30 100.0 35 .............................. ATGCCCGCTCTATGGGCATTGAGAACCGTCAAGGA 5121 30 100.0 35 .............................. ATGCCCGCTCTATGGGCATTGAGAACCGTCAAGGA 5056 30 100.0 35 .............................. ATGCCCGCTCTATGGGCATTGAGAACCGTCAAGGA 4991 30 100.0 35 .............................. ATGCCCGCTCTATGGGCATTGAGAACCGTCAAGGA 4926 30 100.0 35 .............................. ATGCCCGCTCTATGGGCATTGAGAACCGTCAAGGA 4861 30 100.0 35 .............................. ATGCCCGCTCTATGGGCATTGAGAACCGTCAAGGA 4796 30 100.0 35 .............................. ATGCCCGCTCTATGGGCATTGAGAACCGTCAAGGA 4731 30 100.0 35 .............................. ATGCCCGCTCTATGGGCATTGAGAACCGTCAAGGA 4666 30 100.0 35 .............................. ATGCCCGCTCTATGGGCATTGAGAACCGTCAAGGA 4601 30 100.0 37 .............................. TAACAAATCACTATTTAATTTGTATAAATTAAATAAA 4534 30 100.0 37 .............................. TAACAAATCACTATTTAATTTGTATAAATTAAATAAA 4467 30 100.0 37 .............................. TAACAAATCACTATTTAATTTGTATAAATTAAATAAA 4400 30 100.0 37 .............................. TAACAAATCACTATTTAATTTGTATAAATTAAATAAA 4333 30 100.0 37 .............................. TAACAAATCACTATTTAATTTGTATAAATTAAATAAA 4266 30 100.0 37 .............................. TAACAAATCACTATTTAATTTGTATAAATTAAATAAA 4199 30 100.0 37 .............................. TGCGAATAAATTACTTTATGCGTGTACATATTCTAAA 4132 30 100.0 34 .............................. GGCAATTCAAAAGAGCAAAAAAGAAAGCGCATAA 4068 30 100.0 34 .............................. GGCAATTCAAAAGAGCAAAAAAGAAAGCGCATAA 4004 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 3939 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 3874 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 3809 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 3744 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 3679 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 3614 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 3549 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 3484 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 3419 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 3354 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 3289 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 3224 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 3159 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 3094 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 3029 30 100.0 34 .............................. TTAATACATGTGTTTTCATCAATTACATATTTTT 2965 30 100.0 34 .............................. TTAATACATGTGTTTTCATCAATTACATATTTTT 2901 30 100.0 34 .............................. TTAATACATGTGTTTTCATCAATTACATATTTTT 2837 30 100.0 34 .............................. TTAATACATGTGTTTTCATCAATTACATATTTTT 2773 30 100.0 34 .............................. TTAATACATGTGTTTTCATCAATTACATATTTTT 2709 30 100.0 34 .............................. TTAATACATGTGTTTTCATCAATTACATATTTTT 2645 30 100.0 34 .............................. TTAATACATGTGTTTTCATCAATTACATATTTTT 2581 30 100.0 34 .............................. TTAATACATGTGTTTTCATCAATTACATATTTTT 2517 30 100.0 34 .............................. TTAATACATGTGTTTTCATCAATTACATATTTTT 2453 30 100.0 34 .............................. TTAATACATGTGTTTTCATCAATTACATATTTTT 2389 30 100.0 34 .............................. TTAATACATGTGTTTTCATCAATTACATATTTTT 2325 30 100.0 34 .............................. TTAATACATGTGTTTTCATCAATTACATATTTTT 2261 30 100.0 34 .............................. TTAATACATGTGTTTTCATCAATTACATATTTTT 2197 30 100.0 34 .............................. TTAATACATGTGTTTTCATCAATTACATATTTTT 2133 30 100.0 35 .............................. CAATAGAGGAAATGGACTTTGAGGCATGCGGATAT 2068 30 100.0 35 .............................. ATGCCCGCTCTATGGGCATTGAGAACCGTCAAGGA 2003 30 100.0 34 .............................. GGCAATTCAAAAGAGCAAAAAAGAAAGCGCATAA 1939 30 100.0 37 .............................. TACAAAATCAAATGCTTGTATGGTTAGAAGGTACCTG 1872 30 100.0 34 .............................. TTTGAATATTAATTTAAACTATTTACTTCTGGAT 1808 30 100.0 34 .............................. TTTGAATATTAATTTAAACTATTTACTTCTGGAT 1744 30 100.0 34 .............................. TTTGAATATTAATTTAAACTATTTACTTCTGGAT 1680 30 100.0 34 .............................. TTTGAATATTAATTTAAACTATTTACTTCTGGAT 1616 30 100.0 34 .............................. TTTGAATATTAATTTAAACTATTTACTTCTGGAT 1552 30 100.0 34 .............................. TTTGAATATTAATTTAAACTATTTACTTCTGGAT 1488 30 100.0 34 .............................. TTTGAATATTAATTTAAACTATTTACTTCTGGAT 1424 30 100.0 34 .............................. TTTGAATATTAATTTAAACTATTTACTTCTGGAT 1360 30 100.0 34 .............................. TTTGAATATTAATTTAAACTATTTACTTCTGGAT 1296 30 100.0 34 .............................. TTTGAATATTAATTTAAACTATTTACTTCTGGAT 1232 30 100.0 34 .............................. TTTGAATATTAATTTAAACTATTTACTTCTGGAT 1168 30 100.0 35 .............................. AAAATTTGCTTCTGGTGGAATTGTTGGTGGTAATT 1103 30 100.0 37 .............................. TTCCAGTAATGTGTTCTTACCATTATAGTTGATCCCT 1036 30 100.0 34 .............................. TTAATACATGTGTTTTCATCAATTACATATTTTT 972 30 100.0 34 .............................. TTAATACATGTGTTTTCATCAATTACATATTTTT 908 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 843 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 778 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 713 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 648 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 583 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 518 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 453 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 388 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 323 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 258 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 193 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 128 30 100.0 35 .............................. AAAAGATGGTGAGGATTGCTTTTCTGTTCACAGAG 63 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 108 30 100.0 35 GCTTCAATCGAACCATAGTGGAATTGAAAT # Left flank : CGAACCATAGTGGAATTGAAATTTAAAAAACTTTTCTCTTTTGTCAGGCGATAAA # Right flank : TTTAATAAATTTTATTCGTCTAAGGTTTCTTTTA # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:-3, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATCGAACCATAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 195-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFSL01000109.1 Thermophagus xiamenensis strain HS1 Contig109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 194 30 100.0 35 .............................. CTACCGTTGTAGTATCTTACTAATGCGCTGCCATA 129 30 100.0 38 .............................. CCTATTCAGGTATTTTTTACTGTTACCTTTGGTAATAT 61 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 37 GCTTCAATCGAACCATAGTGGAATTGAAAT # Left flank : TCGAACCATAGTGGAATTGAAATTTGACTACTCGCCTCTCATTGATAATGAGTCTGTG # Right flank : TAGTGATACTTGAAAATTCACGTGGTGGAGCG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATCGAACCATAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 258-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFSL01000107.1 Thermophagus xiamenensis strain HS1 Contig107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 257 30 100.0 35 .............................. ACCCTTTGACGTTAAAGCTTTTGAAAAGCAACTTT 192 30 100.0 37 .............................. GACACGTTGAAGCTTTATTACAACAAAAAGGCCTCGA 125 30 100.0 36 .............................. TGATGCGGGGCATTTCTTTTCTATTGGTGCAAAGCC 59 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 36 GCTTCAATCGAACCATAGTGGAATTGAAAT # Left flank : CGAACCATAGTGGAATTGAAATCAATAAGCTCGTTAAGAGTACTTGCCGGCATAGA # Right flank : TTACTGCCGCTCTTGGTGTTATTAATCTTA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATCGAACCATAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 8041-7539 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFSL01000037.1 Thermophagus xiamenensis strain HS1 Contig37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 8040 46 100.0 30 .............................................. TTCATGGTATTAAAATTTAGACATTGCATA 7964 46 100.0 30 .............................................. GGATTTTAGCGTCTCACAGTACTAAAAATA 7888 46 100.0 30 .............................................. TTCATGGTATTAAAATTTAGACATTGCATA 7812 46 100.0 30 .............................................. CAAAGATATAAACCTAATGTTATTGTTTGT 7736 46 100.0 30 .............................................. ATGCTTTATAATTAGAATCATAATACTTGT 7660 46 100.0 30 .............................................. ATTCATAATATTTTATTTTACCTGTGTTTA 7584 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 7 46 100.0 30 GTTGTGAATTGCTTTCAAAATGTATTTTTGTAGTATTGCTGACAGC # Left flank : GTATTTTTGTAGTATTGCTGACAGCATTCATAATATTTTATTTTACCTGTGTTT # Right flank : ATACCACGCCATTAAAACTTGAATTTCAATTATTTATCTTGAAATTTAGAATTAAAAAATGGCTATTAAAAACATTAAAAAGCCCGGTTTCCCGGGCTTTTTTTTCAGAATAACTCCAATTGCATGTATGGGGTTTCTTTCTTTTCGGTTTCTTTACCGTAGAAAAGTTCCATATCCCCGAACTGTTTATCGGTTACTCGCATGATACCCACATGACCTTTGGGTGGCAAAAAGCTCTTAACTCTTTTGATATGCACATCTGCATTTTCGCGACTGGGACAATGGCGTATATAAATGGAAAACTGAAACATCACAAAACCATCATTCAGCATCTTCTTTCGAAAAGTGCTGTAGATTTTGCGATCTTTTTTAGTTTCCGTTGGCAAATCAAAAAATACCATGACCCACATAATCCTGTATTCATTTAGTCGCTCCATAAGCGCCAATTAATTGGGGATATGAAATTTTACGTCTGGTTCCTTCAAAACAACTATACAATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATGTATTTTTGTAGTATTGCTGACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.39%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 37-513 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFSL01000030.1 Thermophagus xiamenensis strain HS1 Contig30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 37 37 100.0 37 ..................................... AGAACCAATACGGCGCAGACCTACACAATACCTTATT 111 37 100.0 37 ..................................... TCCTAGCTCTAACACTGAAGTATCTGATTTGGGTGCT 185 37 100.0 34 ..................................... CTACAAAAGCTCGATTAATAGAACGAGATTTTCT 256 37 100.0 38 ..................................... TGACAGATAATCAGATTATTATCCAACAGTACACAACT 331 37 100.0 36 ..................................... CGACGGCCACCTCTACGAATTCGAAGGAGGTGAGTA 404 37 100.0 36 ..................................... GGCAACTAAGCTACCCGAAGGCTTCCGTTTCAAGTA 477 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 100.0 36 GTCTTAATCCTTGTTTTAATGGATGTTGCTTTCTGAG # Left flank : TTTTATTTTTTTTATTTTATTTTTTTTGAGAAAAATG # Right flank : ATCAGGTAGTCCTTAAAGGTAGAGATTTTCTTGGTCTTAATCCTTGTTTTAATGGATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTTTAATGGATGTTGCTTTCTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 316-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFSL01000029.1 Thermophagus xiamenensis strain HS1 Contig29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 315 37 100.0 35 ..................................... CCAGAAATATCCATTCTTGAGGGTAGCTATTGCGA 243 37 100.0 46 ..................................... AAAGCAGGTTGGTAACTACCATTGGTTACTACATAACCCAGATAAT 160 37 89.2 34 ..TG.C.....A......................... CTATAGGCTTCTTTAGCCTCGTTAAAATCCATTC 89 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 4 37 97.3 39 CTCAGAAAGCATCTTCCATTAAAACAAGGATTAAGAC # Left flank : CATCCATTAAAACAAGGATTAAGACCTATAGGCTTCTTTAGCCTCGTTAAAATCCATT # Right flank : CAAAGCAGGTTGGTAACTACCATTGGTTACTACATAACCCAGATAATCTTGGC # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAGAAAGCATCTTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 1516-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFSL01000038.1 Thermophagus xiamenensis strain HS1 Contig38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 1515 46 100.0 30 .............................................. CCCACCAACCGCAATCAGCGCATAAGGCAG 1439 46 95.7 30 ......................C......................G TAATAACTGAAAGCGGAGTTACGGCTACTA 1363 46 93.5 30 ......G.................A....................G TAATAACTGAAAGCGGAGTTACGGCTAATA 1287 46 95.7 30 ..........T...........G....................... TAATCACTGAAAGCGGAGTCACGGCTACTA 1211 46 89.1 30 ..................T....................G..AC.T CCCACCAACCGCAATCAGCGCATAAGGCAG 1135 46 97.8 30 ......................C....................... TGAATATACTGGTGACTATCCAGAGCACAT 1059 46 97.8 30 ..................C........................... AGAGCCACCAGATTTAAAAGACCCAGAAAT 983 46 100.0 29 .............................................. TATTTTTACACGCTCAACTTCATTCCACC 908 46 100.0 30 .............................................. ATATTACGAAGGCACTTGGTTGGGAACAAT 832 46 100.0 30 .............................................. AACAAAGAAATCAGTAGTAGCAAAGGAGGT 756 46 100.0 29 .............................................. TATTTTTACACGCTCAACTTCATTCCACC 681 46 100.0 29 .............................................. AGAAAAAATTAGGAAAAAGGTTTTAGGTA 606 46 100.0 30 .............................................. ATTCATAATATTTTATTTTACCTGTGTTTA 530 46 100.0 30 .............................................. AATGTAGGTATTGGAACAATGAGTGCCACT 454 46 100.0 30 .............................................. CAAAAGACTACAAATGGTGGTTCGAGTTGG 378 46 100.0 30 .............................................. CAAAAGACTACAAATGGTGGTTCGAGTTGG 302 46 100.0 30 .............................................. CAAAAGACTACAAATGGTGGTTCGAGTTGG 226 46 100.0 30 .............................................. CTTTCCACACATAATCATCAGTTTTTTTAG 150 46 100.0 30 .............................................. CTTTCCACACATAATCATCAGTTTTTTTAG 74 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 20 46 98.5 30 GTTGTGAATTGCTTTCAAAATGTATTTTTGTAGTATTGCTGACAGC # Left flank : TGTATTTTTGTAGTATTGCTGACAGCTGAATATACAGGTGACTATCCGGAGAACC # Right flank : CCTTTCCACACATAATCATCAGTTTTTTT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATGTATTTTTGTAGTATTGCTGACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.39%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //