Array 1 176188-177526 **** Predicted by CRISPRDetect 2.4 *** >NZ_FBIG01000021.1 Campylobacter coli isolate UNAJL222, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 176188 36 94.4 30 .GG................................. ACTATTATCGTTTGCTTTTGTAAGTCCTAA 176254 36 100.0 30 .................................... TGATTTTTACGAGTTAAAAAATATTATAGA 176320 36 100.0 30 .................................... GAGCCTTTAGAGTATAACGATAATCAAGTT 176386 36 100.0 30 .................................... TATGGCAGTTTTTAAAAGAGCTTGGCGGTT 176452 36 86.1 12 ..........................T...ATG.G. TGAAAGAAAGCT Deletion [176500] 176500 36 100.0 30 .................................... ATGTTACATCTATTTGTAGCATTTACTTGA 176566 36 100.0 30 .................................... AGTTGATTTAGTTGAGATTGATAGCGTAGA 176632 36 100.0 30 .................................... CAGATTAATGTTAGATAACGAGTTATATTC 176698 36 100.0 30 .................................... AACAGTAGAGCTACAGGGTGCGATATGGTA 176764 36 100.0 30 .................................... CGACCCAATATTTTTCGTTGCATTATCTAC 176830 36 100.0 30 .................................... AAAGAGCGGTGAGAATAACGATTTAGGTTT 176896 36 100.0 30 .................................... AAAATAGAATTCTTAAGAAAATATAATAAA 176962 36 100.0 30 .................................... TTATAACCGAAAATAGAGAGCATTACGCTA 177028 36 100.0 30 .................................... TAACCTTGAAACACTCAAAAACTCAACAGA 177094 36 100.0 31 .................................... TTGGTTATTATAAGCCTTAACAAATTCAATA 177161 36 100.0 30 .................................... TGCACTGAAATAAATGAGTTTATAGCAAAT 177227 36 100.0 30 .................................... CAAGGATACGCCGATTTTAACACTCAATTA 177293 36 100.0 30 .................................... ATAATTCCTAATAAAAAAGTAAGTTTTGAT 177359 36 100.0 30 .................................... TTTTGTTGAGTGGGTTATGAGACAAAAGAA 177425 36 100.0 30 .................................... ATATAATATTGATAAGGCATATTATCACGC 177491 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.1 29 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : GCCGACATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAACCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGCAATATAGAGTTTAAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAAAAAGAAGGCTCTAGTGCGATCATAAATAATCTTAACAATAAAGCTGCTCTTATGGTGGTGCCAAAAGAATGTGAAATGTTAGAAAATGAAAGTTTAGTAGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTCGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTA # Right flank : TAGATATTTACCAGATAATGAAAATTTCGGGGTTTTTCATGAAAAATAGCAAAAATTATGCTATAATCTCATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCCGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTATTTGAATTTCTTCATTATTTGAATTTTTATATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTGGTTTCGTTATTAACTTTTTCGTTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACACTAAATTGCAGCATAAAATAACCTAATTTTATAAGATTATTTCTAAATTTACTTG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //