Array 1 34776-35537 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIXW010000027.1 Liquorilactobacillus nagelii strain AGA58 AGA58_second_read_assembly_contig_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 34776 36 100.0 30 .................................... CTTACTAAAAACGGCTATAATGGTACAACT 34842 36 100.0 30 .................................... TCATGTTGGCGATGAAGATTACACCAAAGA 34908 36 100.0 30 .................................... GCTGGAGTGTTTTTAACGGCTGCTTTAGCA 34974 36 100.0 30 .................................... GCAGCAAACGTAAATGTGATTAACCTGAAC 35040 36 100.0 30 .................................... TTGCAATTCCGAAGTAATTATAAAATCATT 35106 36 100.0 30 .................................... TGGAGTCTAGATAGTAGTGGAAACATGGTT 35172 36 100.0 30 .................................... GAATTGAATAAGTAGGCACTGGAGGCTCAC 35238 36 100.0 30 .................................... AGAAAGTGCTGATGAATCATTATCTAGGGC 35304 36 100.0 30 .................................... CGGTCATACTCATCCCATACCACTTATTGT 35370 36 100.0 30 .................................... ATGACGGAATTAAAAACAAAGATATGTGGG 35436 36 100.0 30 .................................... AAATTATCGTCGCATTAAAAATCTGGCTGC 35502 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.8 30 GTTTTAGTAGGATGTTAAATCAATAAGGTTAAAACC # Left flank : TCAAAGTCACCTAGATGACAGGTACAATTTGGACTTACTAAAACATCTAGCCACTGTTTTGACTGACGATCAAAGAAAATCAATCACGGATATAAATAATCAACTTTACACATTGATTCAGCAGTGTTTATTCATGATTGATTTACCCCTTGAGGTTACGTATGATTGGGATTTGAAAAAATTGTTTAAGTATTGCAAAATTCACTTTAATTCAGAATCTATGAAAAAACCATATGCTATAATGGAATCAATCATTAAGGTTCATTTGGAGTGCGGAATCAAATCAGTTGTCGGATTGACTAATGTCGCTCATTATCTTAATCAACAACAGATCCAGGACTTGTTCATGCTAATAAAAGCCACTGGAATTCCAACTCTTCTAATAGAATTCACAGATATGAAACAGAAGAAACTTTATGCAAATAGTGACTTTTATTACATTGACGAGGATTTCGTTGATTGGCATGTCTGAGATATTAAAATCTGGTTATAAAAGATCG # Right flank : TTGATCATCTAAACTTGATTTCACACCGCTAGTTTTAGGTGAAAAGCACCTGCTTTTTTCAACTTGATTTGACATTTCAAGTCTTAAAAAATAGTTATATCAGTCCGAATTGTCATCATTACATCAAAAAGCTATCTATTCCGAAGAGTAGATAGCTTAACAATTAAATTATAAATTAAACAATTTTATTTATTAGTACTACTTGAAATAGGACATTTTTTACCTATTTAAGTTGACTTTTCTTTTTTTCCTAGGACCAATTGCTGACGAAACAGTTAAAATTACCCAATAATACTTACACTTGAAACTCTTTCTTCTCCTTTCTGTGTCAGATTGTACCATAATTACTGAAATTTTAGAGTTATTTTTCGACTCTTCTGGAATTCTTGGTGTAACAAAATGGCATTTTTTATAAAATGACCCTAACTTCTAAGTTTTTTTTAAGCTCTGAAAAAGGCTATAAATTTAAGCTCATAATTTCTAGGTTTCTCCAAATTATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTAGGATGTTAAATCAATAAGGTTAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 65960-67782 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIXW010000007.1 Liquorilactobacillus nagelii strain AGA58 AGA58_second_read_assembly_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 65960 30 100.0 40 .............................. GCTACATTGACAACTACGCAGCTGGTTATCGCTACATCGT 66030 30 100.0 36 .............................. AATTACATTGACAACGATACGGTAAAATTAACAAGT 66096 30 100.0 37 .............................. TTATTAAAATATCGCCTTGCTTGACATTATTAATTTC 66163 30 100.0 35 .............................. TGCGTTGCCTTTTGTTGTGTCAAAACTTGCTCCGC 66228 30 100.0 37 .............................. TCCGTTCTAGTTGTAATTGACATTAGAATATCAACGT 66295 30 100.0 36 .............................. ACAAATTTAGCTCCGCAGTGGATCGCAGAAAAGAAA 66361 30 100.0 37 .............................. AAACAATTCAGCAAAATATAATGAAGCAAAACGTGCT 66428 30 100.0 35 .............................. AGGAAAGTATTAATTTACCAGCTTCAATAAATGCA 66493 30 100.0 37 .............................. CATTTTTGCGACTTTATCAGACGAACCACCGCCGCCA 66560 30 100.0 36 .............................. AACCTTACACGATTCTCTTTTACGCCAAATAATTAG 66626 30 100.0 35 .............................. AGCAATATCGCGCCGCAGTGGGTCGCAGAAAAGAA 66691 30 100.0 37 .............................. GAAACTTGAATATAGTTCATGATTGGCATACTCTCAG 66758 30 100.0 35 .............................. ATTTCCGATGAACAGTGGCTTAACATCCTCATCCT 66823 30 100.0 36 .............................. GACATTATTTTAGCCAGTCCGCCATGCGAATCTTGG 66889 30 100.0 37 .............................. AACAACGCTAACGCGCGCAACATATTGAACGTTTTGC 66956 30 100.0 38 .............................. AGGTTTTTGAAATCGGTGTACATTGTTCCGGTGTTAAT 67024 30 100.0 37 .............................. AATACATTAATGATTCTAACACGCGATTCGGTTTAGT 67091 30 100.0 37 .............................. AAATAACGGACGTACACAATCAATACAGTTAAAAAAA 67158 30 100.0 36 .............................. AAGCCATTCATGACGTAACCCAACATTTTCTGCTTG 67224 30 100.0 37 .............................. CTACCCGCAAATGGCTACTAGATTGTATGGCGCCGGC 67291 30 100.0 35 .............................. GAAATATACACAAGCTTGGCAATGTGATTGACTAT 67356 30 100.0 37 .............................. AATGATATTTACAACGATAGTCCGCTTTATGAATCAT 67423 30 100.0 37 .............................. TACAACTCGCCTATTCTACTAGGCGTCCAGTAAACTA 67490 30 100.0 36 .............................. AGAAATGATCCTGATAGGGATTTAAAGTTAAAGAGG 67556 30 100.0 36 .............................. AACGGGTATTGACAAGCTAGGTGCTACGATTGTTGC 67622 30 96.7 36 ..........G................... AACTTTGCCTTGCCGATACTGAACGCCTAACTCATG 67688 30 96.7 35 .............................T GTGGCAACTGGAGCAAAACGGTAGAGGCAGAAACT 67753 30 93.3 0 ............................GT | ========== ====== ====== ====== ============================== ======================================== ================== 28 30 99.5 36 GATTCTATTTAACTTAAGAGGAATGTAAAG # Left flank : GCCAATCTCACAATTGGAGGGGAATAGTATGATTAAGATTTTAATTTTAACTAAGCAAGAATTAATTGGGGAATCTATCAAACTGGTCTTATCTGCACATCAGGATCTGCAGGTTAAGATGGCAGACAACTGGCAGACAGCACCAATTAAAAATGATATTATTATGCTTGATATGGGATTGTCTGATACCGAATGTTTAACCTGTATCCGTAAAACAGTTGGGGATGCAGCTAAATTAATGATGCTACAATTAACGGGCTGTGGGTGCACTTTATATAATTTTTCTCAAGTAAATTGTTTAGGGTATTTACTGCAATCACGAAAAGTTTCTTTAACCGAACTTTATCCGGAAATACAGCGCGTTTGGCAGGAAAATTCAAAGCAAACGGCTGCGTTTCCACAAAAAGTTGTTAAGCTTTTTTCACAGGCAATTGATAAATCTACTGGAATGTCAGTTCCGGCAGCCTCTGTAGCGGAACTTTCCGCATCTGAATGGGAAA # Right flank : TTATACTACCTGCAGGTTGAGTAATTCTTGCTCCCATATTTCTTATAAATTCTAACCAAAATGCCGATTAATATTCTGCTGATACCATATTTTCTCGTAATCACAGCCTTAACTTCAGCATCATTAAGGTACTCTTTGACTGCTATAGTTTTATTCTCAATACTACTTTTGTCATAATAAATACCCCTAAAGTCGAAACGTAACTTTAGGGGTAAAATTTAATTTTCTGATTTAAAAATCAAAAATAAGGTTCTAGATCATTAGATTAAAGCTTTAAGTACGTGTTTTTTACACTGCACTTAGTCAAAAGGATATTTCATACCCCAAGCATTTCTTACACTATCTAGAATATGAGCAACGTCGCGTGAAATTGCCAGCTGACCGTCATCATGTCCATTAGCAATATAACGTTGCATATCGCGAACCTCATATCGTAAAGCCTGCGTACCATCACCGGAGCTCAAAGTCTCTGTAGTTTGGTCATGGGCATCTGCAGTATA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //