Array 1 58951-60569 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJB01000016.1 Pectobacterium brasiliense strain Y49 scaffold16-size107484, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 58951 29 100.0 32 ............................. TTCTCTTCTTCAGTACCGTTGTCACGAACGCG 59012 29 100.0 33 ............................. GGAACTAACCATGCTGACAAAGAAAGTAATGGC 59074 29 100.0 32 ............................. TGCTATGGCCTAACGTTGATGAACCGGATTTG 59135 29 100.0 32 ............................. AGACGCAAAAAACGAAGCTGGAAAGAGAATTC 59196 29 100.0 32 ............................. CCAGCATTTTTACCTTCCTCAGATTGTTTAAA 59257 29 100.0 32 ............................. ACATCAAAACCATGATGATGAGAATCAGAGGT 59318 29 100.0 32 ............................. GGTGAAGTTGACCTCATTATCAAGGCGAAAAA 59379 29 100.0 32 ............................. AGACAGGTTGAGGACGTTCACCGCTTTCACGT 59440 29 100.0 32 ............................. CGTGCCTTCCACCATTTTCAACGTGGTGGTGG 59501 29 100.0 32 ............................. TAATCACTTGACCGCCACACGTTGAAACGGGT 59562 29 100.0 32 ............................. CGGCCATTCAGGCAATCAGCGTTCCCGGAGCC 59623 29 100.0 32 ............................. TTGGTATTTACAGACGGTAGTTGTACCGTTCA 59684 29 100.0 33 ............................. GATTGTGGATAATAACCTGAACACTCCAGAAGA 59746 29 100.0 32 ............................. ATGCTGTTCCGGGGCAATACTCACACCACGGA 59807 29 100.0 32 ............................. CTAAATTGGATGGCGTCGGCGTTTTCACTGCT 59868 29 100.0 32 ............................. TTTTAATACAAATGCCATTTATTGATCTCCGT 59929 29 100.0 33 ............................. GTCTCATTCAGCGTCTCAAACCGATTTTCTTTC 59991 29 96.6 32 ........T.................... GGGGGAGATCGGGGCAGGGTGTGGGGGAAGGG 60052 29 100.0 32 ............................. GTTACCAACCAGAAGAGAGTGGTGACCGATCT 60113 29 96.6 32 ..........T.................. TTCCCCTGTTCATCCCATGTAATTACCTGAGA 60174 29 93.1 32 ............G.............T.. CTGCCAGATGTCGATCAGGTAGACAACGAAGA 60235 29 86.2 33 A..C........T...............C GAGCATGAAACTTAATTTAATTAAGCTGTTACC 60297 29 82.8 32 ......T.TA.C.G............... GTGTTCATTGCGTTGGGACTCCTTTGGGTTGT 60358 29 89.7 32 ...........A.T.T............. GTCATCGAAACAAAAAGTGGTGCCGCCCCAAT 60419 29 100.0 32 ............................. AATTCATCAAAGTACAGATTGCCGGTGTAACT 60480 29 96.6 32 .............G............... TATCTTATCCATTTTCGGCATTCCACTTCACA 60541 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTGCGCCGCCGTTACCGCCGGACGATGCACAGCCGCCAGCGATCCCAGAACCGAAACCATTTGGTGACAGCGGTCACCGAGGACAAGGTTAAATGAGCATGCTGGTGGTTGTAACGGAAAATGTTCCACCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCAGGCGTGTATGTCGGTGATACTTCACAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGGACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GATGTGAAATGTAAATCACACATGTTTCCATATTGTCAACTCGTTCTGTTTATGGCATGGTGTTTCCAATTTGGAAATACTAGGGAAGGCATCAGAATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGTCTAGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTTGAGCGGGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTATGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCAGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31152-31479 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJB01000017.1 Pectobacterium brasiliense strain Y49 scaffold17-size203473, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31152 28 100.0 32 ............................ ACGCTCGAGGCAAATGGCATTGTTGCGTTCTT 31212 28 100.0 32 ............................ AAAGACAACGCTAAACGCAGAAAGTATCTCAA 31272 28 96.4 32 ...........C................ GTCAGGGTTAGTAAGATGCTGTGTTAGTCGGT 31332 28 96.4 32 ...........C................ TGTTGCGCTGGAGAGCCGGATTCACTATCACA 31392 28 100.0 32 ............................ ATGCGCGATTTTCTCAATGCGAAAGAAGAGGT 31452 28 85.7 0 ...........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 96.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCTGACGTTCTGTCATAAAGTCGGCGTCTGCGCGATCTTCTTGCAAAAAAGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGAACCTCCTCCTTAATAAATACAGAAATTCAGCCAGCAACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCCATAGCATATGCAGATACCTGGCATAGGCCTATTGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTACGCATCGTCGTAACTCATTGAGTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGGTTTTTCGGGAGAAATGGTTTATTTCCTTTTAACATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAACGCTCCTAAAGTCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAGCAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCCGTCGGGCTGGAATGTCTGGGGTTGATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTACCTGTTAAAAGTAGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 40292-38283 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJB01000017.1 Pectobacterium brasiliense strain Y49 scaffold17-size203473, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40291 28 100.0 32 ............................ ATCCGCTGGGGCGCGTCGGGACGGCTGAAGAC 40231 28 100.0 32 ............................ TTGCGAGAAGCCACTTTCAGTAGGCGATTGAA 40171 28 100.0 32 ............................ GTGCCAGCATCGGGCAGGATTGTGTACATGCC 40111 28 100.0 32 ............................ ATCGCTGACGCGGCCTGAGACACGCTATTTAT 40051 28 100.0 32 ............................ GAACTCACGGGCATTCAGCGCCGCGTGTGCGG 39991 28 100.0 32 ............................ TGTGCGCCGAACCCTCCTACTGCCACATCTGC 39931 28 100.0 32 ............................ GATGGCAATCTCACGAGGCGGGAGATTACCGA 39871 28 100.0 32 ............................ AGAGAACTTACCGCCAAAAGCGATACAGAAAT 39811 28 100.0 32 ............................ AATTTCGGCCGCCGAGTCCGCAACTATCGGCA 39751 28 100.0 32 ............................ CTGGCCAATGCCAAGGCTTGAACCAATGCCAG 39691 28 100.0 32 ............................ AGCGGCAAGCCTATCCCGCAGCAGATTATTGA 39631 28 100.0 32 ............................ GAGCGGGGTGATGTTGTAGGTTTTCATTTCGG 39571 28 100.0 33 ............................ ATTATGACAGCCTCGCAGCGGTGAAGGGATCAA 39510 28 100.0 32 ............................ ATGTGAAGTACGGTTCCCTTGATTGGGGATGT 39450 28 100.0 32 ............................ TTCAGCGCGACATCAACTTGCTCAGATGGCCA 39390 28 100.0 32 ............................ GCACCGATGGCACCTGCCATTACCGCCGCATC 39330 28 100.0 32 ............................ GCGTTTCTTCGGTGATGGCGGGATGAATGTTT 39270 28 92.9 32 ...........G.T.............. TAAAAGAAAAGCGCGAAATAATCGCGTTATGG 39210 28 92.9 32 ...........T.T.............. AGTTTTCTGAACGCTCATCAGCAGACACATCA 39150 28 89.3 32 ........T..T.T.............. GGGGAATTCATCTTCCAGCTTCATTGTTGCTG 39090 28 92.9 32 ...........T.T.............. TGAATAAAGTCCCGGAAACGCCGCCGTACACG 39030 28 92.9 32 ...........G.T.............. CGCGGGAAACGCCGGCTCTCCTGGGCCTGCTA 38970 28 92.9 32 ...........G.T.............. TGTTACCGCTCAGCGCAATAATCAGCGTTATA 38910 28 92.9 32 ...........T.T.............. AAAGAGCTATTTATGGGTGCGCAAACCGCTGA 38850 28 96.4 32 .............T.............. TGAACGGACAATGCAGGGAGATCGGCACCTGC 38790 28 96.4 32 .............T.............. AAAATTGAAGAGGTAAAGCGTGATGCTAACTC 38730 28 92.9 32 ...........G.T.............. TGCCACTCATCCTGATGCAGGAAGAGGTTCAT 38670 28 92.9 32 ...........T.T.............. GTTGAACCAGCGCACGAACACGTTGTGCTGAT 38610 28 96.4 32 .............T.............. TGTCAATCCGGTGCGTGGGGAACCGCAGGCGG 38550 28 92.9 32 ...........T.T.............. CGTTCATCAATTATCACCGGAGCGCCGAGAGG 38490 28 92.9 32 .C...........T.............. GCGCGGCAAAACAACAGTTACCGGACCAAGCA 38430 28 89.3 32 ...........G.T......T....... ACATCGCGTTATGTGATCAGGCTCGAGCTGGT 38370 28 92.9 32 .........T.........A........ TGGGTGCGGTTAGAGGACAAAGAACGCGCGCT 38310 28 78.6 0 ...........T........T...TCCC | ========== ====== ====== ====== ============================ ================================= ================== 34 28 96.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTCCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATATATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAATTATTTGATAAGAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTACTTCACGGGCTTAACAATCAATGAGTTACAGCTAAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCTGGCTACA # Right flank : CTGTCTTAAGCGCCATTATCTGGCTATTATCGAGGTAGCACTATCGTCAGTATTTGATGCGTTATCATCGTTAAATAACGTATTTCTGATTCCCCTTTCTCGTAACATTTTTAAGTAATGGGTTTCTTTATGGGGAATGAAAAATTGCGGATTGAACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATATGACCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCTGT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 48865-49251 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJB01000017.1 Pectobacterium brasiliense strain Y49 scaffold17-size203473, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48865 28 100.0 32 ............................ ACGGGAATTCGGTGCTGCTCGAATAGCGGTAC 48925 28 100.0 32 ............................ ACCCATGTTCACAACGTAAACCGGCATTACAC 48985 28 100.0 32 ............................ ATGCGAACCAGCAGGCGTCTGTTGCCGCCGCT 49045 28 92.9 32 A..........T................ AGATAATGCGGCAACCGTGCTGTTCAAACACT 49105 28 96.4 32 ...............A............ TATGAGACAGTGTTAAAAAGGCGAAGGCCAAT 49165 28 100.0 32 ............................ CTTGAGCAGCAGTTAGCAGCAGAACGGGCGAA 49225 27 85.7 0 ...........T.C.........-..T. | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGGTTTCTGAGTGCAAAACCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAACGCAGAACGGCTGCGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGCATTCCCGACGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGTCAGATGTTCTTCGTGTTTGTGGAACATGGCCCGCTACAGGATGCACCTATCGCCGGACGCTTTTCCTCCTACGGCCTAAGTGCAGAAGCCACCGTTCCTTGGTTCTGACCCCTTTTTTGGCGACCATCTGCAACCCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGAGATAAAATGAGTATTCTCTTTAACAATCTGGTGGTTAGATTAAAAACCTAACC # Right flank : ACTATCGAAATGCGTCGCTGGTGCGACGCATTCTTGAGGACTATTCCCCGTTGAGGGTAACCACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCATTAGACTGTTTCCGAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGATAATACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAACTCTCGAAATCCTGACGCACCGTGTGGTCGGCATTCTCGTTAATCGTTAACGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCCATCTCCCTGCTATCAGGCTTCACGCGCCAGAATCGG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //