Array 1 2059629-2060509 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072045.1 Akkermansia muciniphila strain Akk0500a chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2059629 31 100.0 34 ............................... ACATTACGATTGACCCGGCGGGCCGCCCGACTTT 2059694 31 100.0 34 ............................... TCCGCAGGCTTATGATGAGTTTGATAATTGGGAA 2059759 31 100.0 35 ............................... CGACTCCGACCGTTCCCAGCTCCGAGTCGCAAATC 2059825 31 100.0 34 ............................... TTATTTGTGGGTGTGAAACCTGTAAACTGGTATG 2059890 31 100.0 34 ............................... ATTAGCAAAAAAAATAAAAAACGAACTCGCAATT 2059955 31 100.0 34 ............................... AACGCCGCTCAGGTGGATCTGATGGGAGCCATGG 2060020 31 100.0 34 ............................... CGAGGATAACGGCGGCGGCTGGAAGCCCTGGGAA 2060085 31 100.0 35 ............................... TCTGTTACAAGGAATTGAAATGGGCCATGCAGCGG 2060151 31 100.0 35 ............................... TACCCCTACGGACCAGCATGAGCCAATCCATAAAC 2060217 31 100.0 34 ............................... TTTGCTGATATTCATGGTTTATTGTTTGGTGAAG 2060282 31 100.0 34 ............................... CCCTCGTATGACGACATGCTTGAAAGCCCCTCCT 2060347 31 100.0 34 ............................... TTCATGGGGCAAACCTGCTGGACGATGATGTGAG 2060412 31 100.0 36 ............................... TGTTGGTAAATAACCTTGGCAATCGTCCACGGAACA 2060479 31 90.3 0 ........................C....GT | ========== ====== ====== ====== =============================== ==================================== ================== 14 31 99.3 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTCCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGATGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTCTTATTAAGGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGTTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAGTATTTTGACGGAGAAAGTTGGCTTTTAGGATGATATGGGAAAAATGACGGAAATTATTATTGGACGAATATGAAAACAAATACAAAAAGATATTATATGGTTTCCGGATTATGTTTGTGCCTGTTCATGGGGATATTTTCTTGTATTCCGGAAGCTCCGGAGCATAAGACGGAAGAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGTCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCGCCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2483379-2483610 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072045.1 Akkermansia muciniphila strain Akk0500a chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================ ================== 2483379 34 100.0 32 .................................. ATCACCTCCGCCTATGTGTCCAACCTGTCCAG 2483445 34 100.0 32 .................................. ATAGCTTCCGGCCGCTTCCGGCATGGGTGACT 2483511 34 100.0 32 .................................. ATCAATTAATTTTCTTTCATCATTAATGTCTT 2483577 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================ ================== 4 34 100.0 32 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACA # Left flank : CTGACGTGGAAGCATATCAATCTGAAATCCGGCCTGGTTTCACTGGCGCCCACCCATACCAAAACGGGAGGGAGCCGCCATGTTTCCATCCTTCCCGTGCTGGGTTCCATCCTCAGCCGGATGTCTTCCGCCGGTTCCCCCGCCCGTTCCGTCTGCCCGCCCAACTGGGAAAAGAAATGGAAGGAAGTAAGGCGCCGGTCCGGCATCCTGAAGAAAAGCGGATGGGTTCAGGACGTGCTGAGGCATACCTACGCCTCCTACCACCTGGCCCATTTCTGCAATCAAAACCTTCTCCAGAAGGAGATGGGACACTCCTCCCCCTCCCTGCTGCTGGCCCGCTATCTTAATATGGAGGGTATCACCTCCGCAACCGGCGCCATGTTCTGGACGCACAGCTTTGTTTCTCCCGCTCCGTTAAAGGAAGACTGACAAAAATCCGTCTGGAATTGCGCGGCCAAAGGCGGAGCAATCCCCTGCGCCATCAGACCGGAGGCGCATTT # Right flank : ACATAGATAATGTGCCTTATTTTTATGTTCAGCGACTTATAAAAAAATACGGCGTCCGATATTTTTACCAGAGGAGCATCTGCTGAGGCAGGGAAACCTCCTGTCGGGGACAAGACCTGCCATGAAAAACGAACATCTTATCCCACTGGATATTCGTAACGAAAAGACAGCGGACAGAACCATCAGGCGGTATCATTTTCTGGATTCTGCGGGAGTGGGTAGCCATTCTTTCCTGAGTAACGCACGCGCGGGCATAGACGCTATACTGAATCATCGTATAGCCGTCTTCTAAAAGAGCCTTACGGAAATATTGATAGTTTTTTTTATCTTCCGGCGTGGTTGTGGGAAGATCAAAGAACACAACTAGCCAGCCCATTTTATAGTTGTCATAAGCCATGGTTCATACGGTCCGGATTGTCCGGCAAGAACTGCTTTGCGGAAACTGCGGCAAACGGCCTCTACCGCCGCTTTCAACGGCAGCTGTTTATCCCGGTACATGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 3 2554720-2552272 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072045.1 Akkermansia muciniphila strain Akk0500a chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2554719 33 100.0 34 ................................. TGCGCTTCTTGCAGGGTCGCCCCGGACTGGACGG 2554652 33 100.0 34 ................................. AAACCCGTCCAGCGGGCCCTGGGGCTGAAAACGG 2554585 33 100.0 34 ................................. AGTTTTATACCGGAAGGACGACGCGGGGGCCTGG 2554518 33 100.0 34 ................................. ACAAAATGAAAAGAATTAAAGATGTATATGGATG 2554451 33 100.0 35 ................................. TACCCCTACGGACCAGCATAATCAGACAACATCAT 2554383 33 100.0 34 ................................. CGGTTGACGGGTATCTGCTCGGAGTCGGAAAAGA 2554316 33 100.0 34 ................................. CTGGAAGACGCCGCAGGCTTCCGTGAAGCGCTCG 2554249 33 100.0 34 ................................. TAGGCGCTCAAATGTTGCTTTGCACCTTTTCCTG 2554182 33 100.0 34 ................................. CCGTACCACCCCAGCACGGGAAGTCCTCCCTGAT 2554115 33 100.0 35 ................................. CTTACGATAAAAATCCGCGCCGCAATGATGAAGCG 2554047 33 100.0 34 ................................. TTTCATGGGCCGGTTTAATGAAGACGTGAACACC 2553980 33 100.0 35 ................................. AATGGAAATGTCTCCGATTCAAATCGCCCGCCGCT 2553912 33 100.0 34 ................................. TTACGTTGTCGATGACAACATGCAGGAGCGAAAC 2553845 33 100.0 34 ................................. ATAAAATGAAAAGAATTAAAGATGTATATGGATG 2553778 33 100.0 35 ................................. TACCTACAACGGGACGGAAGTCTTTCCGAGGAAAA 2553710 33 100.0 35 ................................. CGTCAGCCACGGAAACCGAAATGACCGCCCCGGCG 2553642 33 100.0 34 ................................. TGTTGCATGGACTCCACGAGCGAACACACCGTCA 2553575 33 100.0 34 ................................. CTGATTACAGAGTTTTTCAACGTCCTTTTCTTGG 2553508 33 100.0 34 ................................. CACAACCTGGACACGGTCCGCCGCGTCCTGGACG 2553441 33 100.0 33 ................................. CGCCCATAAATGCCCGTAAGGGTCAAATTCAGA 2553375 33 100.0 35 ................................. TGATGGGAAGAACTTTTCTCAGCGCATTTGGGGAA 2553307 33 100.0 34 ................................. GAACATGACAAAAGGGCATTTGGAAGACAACATG 2553240 33 100.0 31 ................................. AGCAGAAAGGAAAATAAAACATGTGTGAGAG 2553176 33 100.0 35 ................................. CTGTTTGACTGGCTGGACGGACGGAAAAACAAGAA 2553108 33 100.0 33 ................................. CAGAAGGGTGATAAGGTGAGGTACGTGCCAACG 2553042 33 100.0 34 ................................. CTGGAAGTCCTGGCTCCGACAATGACCCTGCAGG 2552975 33 100.0 34 ................................. CATGGAGGTGGCGTCCGCCGCGCCATCGTAGTAG 2552908 33 100.0 34 ................................. CTCTCAAGCAACTCCTGTACGCCTCCGGGATAGC 2552841 33 100.0 34 ................................. CAGTATCGCCGCTTGCTCGTCAGTGATATACTGC 2552774 33 100.0 34 ................................. ATGACGTTCACGGAAGTGAAAGGTGAAGAGGTGG 2552707 33 100.0 33 ................................. AAAGAACAAACGCGCGGAAAAACTTTCAGGATC 2552641 33 100.0 35 ................................. GTGAAGTTTTCATGGCTGGAACAGGGCGCAGAGCT 2552573 33 100.0 34 ................................. GAGCGGCACGGCTACACCGGGCAAACCATGCAGG 2552506 33 100.0 34 ................................. CATCAATCCTGCCAGAGCGCCCGTGACGACTTCA 2552439 33 100.0 35 ................................. GCGGAAGCCCTGCCGGAACAACAATTCCCGGAAGA 2552371 33 97.0 34 ...........T..................... ACCCGGTCAAACACATAACAGCAGGCATGGGCCT 2552304 33 97.0 0 ..........................C...... | ========== ====== ====== ====== ================================= =================================== ================== 37 33 99.8 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGACAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGCCTCCTGCTCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCAGCAGGTCGGCGATTGGTGTAATGCATTGGGAGTAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGCAATGTATAAGGTCGGGCGCA # Right flank : ATGACGAGGGCAAGCTTCGAGAAGATGCCTCCCGCCGTACTCTCCAGGGAGTACGTAACTTATCTGGAAAAGAAAAAGCTCTCCAAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGTGGTGCAGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCCCCGTCCTCGTCCCGGAAAACACGGGCCAGCCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2564589-2563191 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072045.1 Akkermansia muciniphila strain Akk0500a chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 2564588 31 100.0 34 ............................... AAGGACGGCATGGCGGACGCGGAACACACGGACG 2564523 31 100.0 34 ............................... ATTTTTTCTGAAATAAAGAATTTCATTTTTCCCG 2564458 31 100.0 34 ............................... ACGCTGTAGAGCCAAGTCCTTTCTTTGTAAGAGA 2564393 31 100.0 34 ............................... CAGCCATGAATAATAAACTTACAAAAAATAGTGA 2564328 31 100.0 34 ............................... GACGTGATTAGCCCCTACACCTACAAAGAACCGC 2564263 31 100.0 33 ............................... GCGGAACGGTCGGATGGCAGGCTGATACGCAAA 2564199 31 100.0 33 ............................... CGGAATGCGGCTTGGGTATGTGAAAAGATGGGA 2564135 31 100.0 34 ............................... TGGTCTGGTCCTGAGTGACCGGGCCGTAGATATG 2564070 31 100.0 34 ............................... TGGTTGTGGATTTTGACCTGCCGACAAAAACCGA 2564005 31 100.0 33 ............................... AGGGTCTGCGTCAACTTGAGCACCGGGGTGTTG 2563941 31 100.0 38 ............................... CGGAAACATCACGCTGGACCTTCCCATGGAGCTGGACC 2563872 31 100.0 35 ............................... TTCTTTTTGCTCAAGTTCCCAGGGCCATTTAATAA 2563806 31 100.0 35 ............................... GACGCGATTAGCCCCTACACCTACAAACAACCGCA 2563740 31 100.0 34 ............................... CGCCTCTATTTTGTCCAGGCGGCCTTCCAGCTCG 2563675 31 100.0 34 ............................... GTGTTCTTCCGCCGGGCAGTCTCCGGCCAAGGCG 2563610 31 100.0 34 ............................... AAGTGCCTAGTCTTGATGCAGAAAGCTACGTCGG 2563545 31 100.0 34 ............................... CTGCGTAACAGTGAAGACCTCGCCTTGAGGTCCC 2563480 31 100.0 34 ............................... CTATAAAGGCGGCCTGACGGCAAAAATCAGTCAT 2563415 31 100.0 34 ............................... ATGGTCTTGGTGGTCGTACTCGTGGGCGTACCTC 2563350 31 100.0 33 ............................... TGGCGGGCGAGCAGTACGCTTGCGGGGTAGGGT 2563286 31 100.0 34 ............................... TGAACGTTCAACCCTTTTGGGTTATGGATTAAAA 2563221 31 90.3 0 ..........................T.G.T | ========== ====== ====== ====== =============================== ====================================== ================== 22 31 99.6 34 GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTTTCCGCAGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCTATCCCGGGGCTCCTCTTCTTTTGTGGAAAAGAGAATAAAACGGTTTCCGGGGAGAGGCCTACAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTTCCGCATCGTGCACAGGCCTTGGTTGCCGGAGATGCAGGCTTTTTAACGCATGAAAAGCTTCTCTCCCGGTCTTCCTTCCGCCGACCCCAAGCTCACAGGAAATTTCCGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTAAGGCCTGGAGTCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGATAATCAGTGCCATAGCCGCCCCGGA # Right flank : GTCGTAGATTGAACGGCCTAATATCCCTAGAACGAGAAGGAGCATTTGGCTATAACGCTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGATTTCAATGGAGTGGTGGACTTTCGCAGAAGAGTATTGACCACTTTTACAGTTATGCTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGAGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGCACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTTCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //