Array 1 187900-187497 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOJD010000005.1 Bifidobacterium sp. MSK.17.10 NODE_5_length_226327_cov_285.607, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 187899 36 100.0 28 .................................... GAATTGGGAGGAAACGACGGCCTGTTTT 187835 36 100.0 28 .................................... ATAGATAGACTTATTCGTCCTTTTGTGT 187771 36 100.0 28 .................................... TCGACCACACACGTTGCCCCACTTGTCA 187707 36 100.0 28 .................................... TCTCCCGCTTCGGCTCCTGCCGACGGCC 187643 36 100.0 29 .................................... TGATTAGGGAGGGTAAGTTGCGCAGTTAC 187578 36 100.0 10 .................................... CAAAATCGAC Deletion [187533] 187532 35 77.8 0 ..G..T.A-.G....A......G............A | A [187514] ========== ====== ====== ====== ==================================== ============================= ================== 7 36 96.8 25 AGTTTGAGCAAAAGGTAATACGACATATATTCAAAC # Left flank : ACCCAAAAGAACTAACCATCCCATCACTGGTGGACGAATTCTGTGGACAATACGCGCAATACTGCGAAGGCTGGCTGGACAAACTACCCGTCCCCGTCTTCGGAAAAAGGCGCTAAAAATGAAGAGAGATAAGGATAACGGCATGTGGACGCTGGTCATGTACGACCTACCCATTACAACGAGAGAGGATGCGGGAGCCGCGAACAGATTCAACCATCTACTCTCTGATTTAGGTTTCGTTCGAGTGCAATATTCCGTCTATGCAAGATACACCCCCACCCAATCAGGCGGTCGTTCTGCGTTAAAGTATATTCAAGCCGGACTACCTCCCCACGGCAACGTGCGAGTACTCTGTGTAACGGACAATCAATGGTCTGATTCACTGAAGTACATCGATAAAAAAACAGCAGACCACAGACGAACAGCCGGGGTTACTGACGCTTTTTGACGACGAAGAATAGTTTAAAAACGTTGATATGAAGCCTTTTGCCCAAACTCGT # Right flank : ATTCAAACAAAATACACAAAAAAGAATAAGCCGGTGTTTCGCCACCCCCACCGGCAAAAGGGCTGTTCACACAAAGATGCGGAGTAAGGAGAGGGCCATGAGAAGTTGCCCGTGAACCCCGCTTTTTGTTTGGCGTTGACATGGCTTGGTTCTTTCCCATCAGTGAGTTCATGTCGTGAACACTGGCATGTATGCGTGACTTAAGAGGGTGCAAGGCATACGGCTTGCTGACAGTCCTTCATGGATTTCAGGACTATCATCCATCGCGCATGTGAGAGTCATGCCATGGATTGTCCCACGAGCTTTAGGGGTATTAAAAAGTGTGGGACTTTGTGCGGGAGACGAGATTCGAACTCGCAATACTTGCTTGGAGGGCAAGGGTGATGACCTTTTCACTACTCCCGCAATAGGAGGGGATGGATTGTGTTTGCGGGCTGGAAAGCACTACATGCAGAGAAAAAATGTTTACGACCGTTCCAAACTTTTTGGAACGGAAGGCT # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTGAGCAAAAGGTAATACGACATATATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 84044-86619 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOJD010000002.1 Bifidobacterium sp. MSK.17.10 NODE_2_length_326161_cov_350.571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 84044 36 100.0 36 .................................... ATCATTGACAGTGACGGCGACGAATCCAGCCGTGAC 84116 36 100.0 39 .................................... TTGAGTTTCGCGACTCACATGGGATGACGCCATCCACCA 84191 36 100.0 34 .................................... ATCCTCCGAGCGCCGATTGACGACCTCCTCGAAC 84261 36 100.0 34 .................................... TCCGGAGTAGCGCCGTTGATGGTCGCGAAGGCCA 84331 36 100.0 38 .................................... GCGCCAACGGGCTGCGCGGCATGATTGAGCAAGTCGCG 84405 36 100.0 38 .................................... GCGAACGTGGCCCGCAACCTCTACGAATGGATGCAGAA 84479 36 100.0 34 .................................... AAAATCAATCACGGCGCAGCGGATTGTAGGCGAC 84549 36 100.0 36 .................................... CTGAAAGAACCGATACAAGTCGTATGGAACGAGGAT 84621 36 100.0 39 .................................... AGTAATGCCGATGGCACGGTAACGAATTTCTCGTGGGGT 84696 36 100.0 37 .................................... GTGACCTTACAATCCAACATGCTTTTCGCGCGTAAAA 84769 36 100.0 37 .................................... GCCGTCGTTTTCGTGGTTTCGTCGGTTTTGGTTGCGC 84842 36 100.0 36 .................................... TCGAACAGACACGTTTTCCCGCCCAGCCATTGCAAA 84914 36 100.0 37 .................................... GAAGAACGAGTCCAAGGCCGAGACCGCCGATAAGAAG 84987 36 100.0 36 .................................... AGGTCAGACGATGCAGACATGCTCGGCCATGATCTA 85059 36 100.0 36 .................................... CCGTGGCAGCAGTGGCTGCTCGTGCACGCGTTGGAA 85131 36 100.0 35 .................................... GGTGTCGTGAAGGGACAAATCAACGCATACGAAAA 85202 36 100.0 36 .................................... GATTTCCACCGGCTGCTCCGCGAACACGATTACGCG 85274 36 100.0 38 .................................... ATGTCGAAACGCGACCTGCTCGAATACCGCGAGAAGTA 85348 36 100.0 36 .................................... GGGCCAATCGGACACCTTAGCCGATGCCTTGTGGCC 85420 36 100.0 35 .................................... CCGTTGAAGGGTGAGTGATGTTCGGACGGAAGAAG 85491 36 100.0 36 .................................... TCGGTGATAATGAAGAACGTCACCGCGACGGTACAC 85563 36 100.0 37 .................................... GCGGACAAGGTCATGACCGACCGTTGTCTACTGTACA 85636 36 100.0 38 .................................... GGACTTAAGTTGTGTGCCGGCCTCAGCGCCGATGGTGC 85710 36 100.0 36 .................................... TCCCGCCTAGCTTCTTGCTTGCGGGCAAAAAGTGCA 85782 36 100.0 36 .................................... GATCCAGGATCGCGGGCAGGGAGTCCTGCACCCAAT 85854 36 100.0 36 .................................... AAGCGAAAACCCATACAAGGAGACCAACAAAATCGA 85926 36 97.2 37 .G.................................. ATCCTTTACCTTGACGACTTTTTGGACTCAATCACAC 85999 36 100.0 35 .................................... GTCAGCAAGATCAGTCAGCGCACCGTTAACGGTGA 86070 36 100.0 39 .................................... CCTTATCGTGCTAATCGTGGTGTTCAAAATCGTATGAAA 86145 36 100.0 39 .................................... AACGTTCGTCCTGCCATTCCTGCCGTTTCGTGAAGCGGA 86220 36 100.0 35 .................................... GCGTACGGCCAGTGCACCTGGTGGACGTGCATGCG 86291 36 100.0 37 .................................... TGGTACAAGCGCATGCGCTATGAGGCTCCATTGAACA 86364 36 100.0 36 .................................... GTCACAGGCCAACGCCTACGCTAGCGGTGCGACTGC 86436 36 100.0 39 .................................... ACGGTTGTTGATTCCGTTCTTTCCAAGTGAGGTGTTCGC 86511 36 100.0 37 .................................... ACCGGCAACCTCAGCGACAACCTGACCAAGCGCGGGT 86584 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 36 36 99.9 37 ATTCCTAAGCTTTTACGCTTAGGACTTCATTGAGGT # Left flank : AGTGGCCGGCCCTGTACGCCTTCCGTCCCCCGCTGCGCTCGTATCTGGCGGCCCCGGTGATCTCGTCGGCCTCGGCGTCGAGCATCGCGTTGAGGATCTGCGTCATCTTCTCGGTGATCAGCCGGTCGAGCCTGGTCTCGAGCAGGTTCTGGTCGATCTGTATGATGTTCTCGGGCATGGTTCCGTCTCCTGGCTTCCAATCGCGGTTTTTTGTTTTGGCGAATGAAAATCGTACACAGGACGCGGGCCATGCCCTCTTACGTCAGGGCCGGAATCCGAAAGTGCGCAAGAATTCGGGCGTTATCGATAAGTGAAGAGTGTTTGTTTTTAGGTGCGAGTGCTGAATCGTTTCTGTGACACGCGGTGAGCGCTCGCACCTAAGAACAATAGGCCTTATGTGTGAGGGCATTCTGGGGATGTATCTCTAATCTGGACAAGGGGAAGGACCTCTCGCAAAAAGCTTTGAGATACGTGTCATTGCAGTGTTTTATAATGTGACT # Right flank : TAGAAGTAGGATGATATGAACTGATTTTTGTTCCGCATTTCCCCTAACTCGATGGGAGATGATGGAACCATGGCAAAAGGAACGAGACACACGCCGGAGTTCAAGGCGAAGGCCGTCAGGCTGTTGACCGAGTCGCGCGGCTCGTATTCGTCGGAGACCAAGGCGATCGAACAGGCCGCCAAGGATCTGGGGGTCGCGCCGGAGACGCTGCGCCGTTGGCGCAACAAGACGGACGCCACGGTCGCGGCGGAGACCAAGCAGTCGGCCGAAGACGCGATGGCGGAGTTGAGGAGTTTGCGGGCCGAGGTCGCGCGATTGAGGCGGGCGAACGAGATATTGACGACGGCGTCGGCTTTTTTCGCGGCACGGCTCGACCCGACACGGCGTTGATGGTCGCTTACATCGACGAATTCAAGGACCGTTTCAGGGTCGGGCCGATCCGCAGGATGCTGGCCGCTTCGCTGGACTGCGGGTTCATCACGCCGCGCGGCTACCGCATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTAAGCTTTTACGCTTAGGACTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 88352-87957 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOJD010000002.1 Bifidobacterium sp. MSK.17.10 NODE_2_length_326161_cov_350.571, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 88351 36 88.9 35 ...........A...C...T......A......... CTTTGGTTCGGCACTTCGCTTGGCATGTCGCCGGG 88280 36 100.0 34 .................................... CTGCGGTGCCGCGTCTGCATACGCGTTCGCCCGC 88210 36 97.2 35 ............................G....... GTCTGGTTATCGTCAAGGCTGGAAGGCAGACGCAG 88139 36 100.0 37 .................................... AAGAGTTTCCAGAATCAGCTCATCCAGACCGCTCGAG 88066 36 100.0 38 .................................... CGAACGTCGTGTGGCAGAAAAAGGACGGCTCGTATCTC 87992 36 86.1 0 ...........................A.AT..CC. | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 95.4 36 TCCTCAATGAAGTCCTGAGCTTGAATGCTCAGGAAT # Left flank : GACAGTCTCGATGGATGCGCCGGTCTCGAAGACACGGATTCTTTTGATGAATGGATCGATTTCGATAATCGATTGAAAAAGAAATACGGCGAAGGCTATGTGCCGTCGGAAGTATTTTTAGCTATTCGGAAGGCGGATGACAAGCTCGTCGGCATCATTGATTTCAGACGTCCGCTATCCCCTTTTCTACTGCAATACGGAGGAAATATTGGGTATAGCATTTTGCCATCGGAACGTCAAAAAGGGTATGCCAAAGCGATGCTCGCCTTACTCCTGCCCATCTGCAAAGAGCAGGGCGAGCAACGTGTTCTACTTACCTGTCACAAGAGCAATGAAGCATCAAGACGGACGATTATCAGCAATGGTGGAAAGATGGAGAATGAAATCGTGAACGGTACGGGACGGAACGAAGACAGTATCATCCAGCGATTTTGGATAGACCTCTGAATATTGGCTTTAATCTAAAAAACTGGAGACGGTTGCGCTTCTTCGCCCACAGC # Right flank : GATTTTTGTTCCGCCCTTATAGTGGGGCGGTTTGCGCCGCTTGGTTTGCATAATACTCGGTTTCGGTCCGTTCCGGTGTCCTGTAGCCCAAGGACTGGTGCAGACGCTTCGAGTTCCACCACGAGACCCACCGGAACGTCGCCAATTCCAGGTCCCTCAAATCCCGGAAGGGCTTGCGTCGCCAGACGAGCCCGGTCTTGTACGCGCCGTCGGCGCTCTCGGCCATGGCGTTGTCGTACGAGTCGCCGACCGTGCCGGTCGAGGGAAGCATGCCGAATTCCCCGACCCTGGTGGTGCACACGAGGCTGATGTACCGCGCGCCATGGTCGGAATGGTGCACGAGACCGTCCGTGCCGCCATGCGAGGCGGCCCATGATATCGCCTGTTCCAGCGCCTGCAGCGGCAGCTCCCTGGTGTCCATGGTGGTGGCGCACGCCCATCCGACGATCCTGCGGGCGAACACGTCGGCGGCGAACGCCGTGTGGCCGAACGAGCCGTTG # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCAATGAAGTCCTGAGCTTGAATGCTCAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //