Array 1 2149-1189 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUDA01000022.1 Ruminococcus sp. AM12-48 AM12-48.Scaf22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2148 36 100.0 30 .................................... AGTCAATAATCCGTAAATTTAAAGAACTCG 2082 36 100.0 30 .................................... CGGATATCTGAGCGATATGCTTTGCGCAAT 2016 36 100.0 30 .................................... ACGGGCAAAAGGTGACTAAACCAGTGCTAA 1950 36 100.0 30 .................................... ATAGAGAAAGTTTATCCATAGCTTCAAGTG 1884 36 100.0 30 .................................... TGACCGGATATGGAACAGCAAGCGGATTGT 1818 36 100.0 30 .................................... GGTTTCTCGTTTCCACTCAATACGTCGTTA 1752 36 100.0 30 .................................... TACTGATTAACCGGTGTGCGAACATCTACA 1686 36 97.2 30 ..........T......................... ATTGTCGATGAGAAGAGGGCATAGTGCATA 1620 36 100.0 30 .................................... AGTGGAACCGCCAGAATGCCGCTAAAGCCA 1554 36 100.0 30 .................................... TTCATTGCGTGCGGTTCTGAAAAGAAGACC 1488 36 100.0 30 .................................... TCATTCAAAAACTCTAAGGACTATAAACCT 1422 36 100.0 30 .................................... CATGGGATGTACAGCAATGACACTTACACA 1356 36 100.0 30 .................................... GCCCCATTTCCGGCGTGTACATATACAACC 1290 36 100.0 30 .................................... GTTGTGTTGTTTGCAAGGTTCTTATCTCAT 1224 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.8 30 GTTTGAGAGTCTTGTTAATACAGAAGGATTTCAAAC # Left flank : AAAAAGGATTCTATCTCAGCTTTATAAAAATCTTTCAGAAAAAATATTGGAAGATCATTTTGAAGAATTTGCGACTGTGAATCAGAAGGTTATCCAGTTTATGGATAAGGTTACGAGCTCTTCCGAATATAATCTGACATATGATGTTGATTTTCAGGCAGCAGGTCTGATAAAATATTGTAATGTACATATGGATTCCTGTTATGATAATCTGACTGAAAAGTTTATAGACTATCTGAGAACCATGAAGCAGATCTGTAATGTTGATATTGTTTTTGTGTTGAATTTGAAGCAATATTTCAGTACCGAGGATCTGAGAGAAATCTATAAACACTGTTTTTATACGAAGATGTATCTGATTAATCTGGAAGGAGTAAAATCAGACTCCATCGAAAATGACAGATATGTTATTATAGATAAAGATCTTTGTGTGCTGGACCTTGTGTTTTAACAACCTTCTATCGCAAGAAGATAACGACTCGGTGAGAATCGGATTTGAG # Right flank : CAGATGAAGGCCTTGGTACAATTGGAAAGAATCACATTCAGAGCAGTTCTAATTCTTCTTCTCAGAACTGCTCTTTTTCTCTGCTCTGAATGTGATACTTTCCTAATGAATTATATCATGAGCGAAGATGGCAGTGTTGTTGGCCCTTACGGTGAGAATGAATCAAAACTGTTTCGAAATGTAACTGCAGCTGATGTAGGAATTACGGAGAATAAGGGAACTGTAAAATATTACGGTGCAAATAATCAGGAATATATCGTAACCTATTCCAAATGCATGGTGACGGGATGGTATACACTTGCTATGATTCCGGTTAATGTTTTCAGTAAGAATATTGCTACAGATCTTACCAGGGCAATATTGATTCTGGTAACTATAGAAATTATTTTATCTGTAACTGCGGCTGTTCTTATTTCCAGAAAGATCGGGAAAAAAGTTTACAAACCGCTGCACATGATAGAGAAAACTGGCGAGGATAATTTTACTGCAAGAATTGTATA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTCTTGTTAATACAGAAGGATTTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 37509-38896 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUDA01000019.1 Ruminococcus sp. AM12-48 AM12-48.Scaf19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 37509 36 100.0 34 .................................... GTATGTGCCTGAAGTGTTAGGAATACTTTATCAG 37579 36 100.0 42 .................................... TCTTACTACTGATTCAGTAGTTTGTCAAGTACTTTTTTCAAA 37657 36 100.0 35 .................................... AATCATTGACCAAAGGTCCGGAAATAATCTTTCCG 37728 36 100.0 38 .................................... AGTATATCTTTTTTATCTGTACTCAACCTAAAAATATT 37802 36 100.0 32 .................................... TTATATAGAATGGACAGAGAAGCATTCTTACA 37870 36 100.0 36 .................................... GCTATAACAAGCATTGCACAAAGAAGTAAAGATATG 37942 36 100.0 34 .................................... GCTGCTTCGTAGCTCTTAGCGAGCTCCTCAAACT 38012 36 100.0 34 .................................... CCTAGGAAGCATCTTCCCACCGACTAGGGCTTGT 38082 36 100.0 39 .................................... ACTTTTTGGTAAAAGCAGATTAAGAAAATTCTTTGGCAA 38157 36 100.0 32 .................................... TCGTTGAAAGTTACTTCAGCGACTCTATAATC 38225 36 100.0 36 .................................... AGGTTTGTTCTTCTTTTTGTAGTATTTGAAAACCTC 38297 36 100.0 34 .................................... CGCAGCACGTCAAGTCTTCTCATTATTAACCTCT 38367 36 100.0 33 .................................... AACCTTTAAGGTTCATGTAATCACCTCCTATTC 38436 36 100.0 36 .................................... GGGGATTGGCATGACATGGAAAGTACACTTCTTTGT 38508 36 100.0 35 .................................... CGGTCCTGTCCTGTCAGTGTGAACATTGGCTCGCC 38579 36 100.0 35 .................................... TGATATTTTTGATTATCTGGATTAGGTCTCCCTTC 38650 36 100.0 35 .................................... GGTTCATGTAATCACCTCCTATTCAGTTATCTCTG 38721 36 100.0 35 .................................... AATGTGTCCATCAACAAGCGAACTCTCCCTTCTCT 38792 36 100.0 33 .................................... TGCGGTTGTGGATTTGATAAAATTTGTGATAAC 38861 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ========================================== ================== 20 36 99.9 35 ATTGAGAAATGTAGCTCCCCGATAGGGGACGGAAAC # Left flank : AAAAAGGAAGATATTTTGGAAGCAGTGCAGTTATTTTATGAACAGTATTATCAGAATTTCCAGAAGAAATTTTCACGAAGTGACAGGAGAAAACCGAATACAGTATTTCTGGGCGGCGGAAGCGGCTTTGTTTCCAAGACAGTGATTTACCCATTATTCGGAGAAAAAGAGGGCATTGAAACTGTAAAAAATATTTTTGACAGAACAAATGTGCCTAAAACCCATCAACATTATAAAGATACTCGTATAGGAGTATCCCCTCATATTTTAAAATGCACAAGATATCAGGGAAAAGAATATATGATGGGGGAATGTGAATTAAATATTATTTGAGCATTTTGTTCTTAAATGCGCAAAATTCTGTATTTTGCCGCGCATGGCTTAAATACTGGATTTGTGAGAATTTTTTACTTTCCAAAACGGCTGCATTTCAATAAAATTACTTTTCCCCCGCAATCCCCCTATTCGTCCCAGACAGGACATGGGGTTGCGGGGATGGT # Right flank : TTCATATCCAAATTTAGAAACAGTTACATTTGGCAATAAAGTGAATTATTACTAGAGAAACAGAGGTGATATCATGAGTCTTTTATATGTAAATGACAGTGGTGCAACAATAGGAATAGAAGGTAACTGCTGTACCGTAAAACAAAAAGATGGTTCGAAACGAATGCTTCCTATAGAATCTCTGGATGGAATTACAATTATGGGGCAATCCCAGATGACGACACAGTGTGCAGAAGAATGTATGCAGAGAGGAATTCCTGTAAGTTACTTTTCAAAAGGTGGTAAATATTTTGGCAGATTAATCTCAACAGGTCACGTCAATGTAGAACGTCAGAGAAAACAATGTGCACTCTATGATACAGGTTTTGCTGTGGAACTTGCTATGAAAATTTTAAGTGCAAAAATCAAAAATCAAAGCGTAGTGCTGCGCAGGTATGAGAAAAGTAAAGGTTTAAATCTGGAAGAAGAACAAAAAATGTTAGCTATCTGCAGAAACAAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAGAAATGTAGCTCCCCGATAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 109488-108807 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUDA01000009.1 Ruminococcus sp. AM12-48 AM12-48.Scaf9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 109487 30 100.0 35 .............................. GGTAAAAGAGATTGACCGGAAACTGAGCAGACGAC 109422 30 100.0 35 .............................. GTATACACAGAAACAACACTACGCCAGAAACTGGA 109357 30 100.0 35 .............................. ACACTAAAATTTCCAGTCTTTTTCTTGTTTCCAGA 109292 30 100.0 34 .............................. TTGGTTCTGATGGGGAAGCAATTAGTTTTAAAGA 109228 30 100.0 35 .............................. ATGACATTAAGCTATGGAATTACAGCGTTAAACGA 109163 30 100.0 35 .............................. GCAGAACAGGCAGCAATAGCAGAGCTGGAAAAGGA 109098 30 100.0 34 .............................. TGCGAATGTATTTCCTTTTTCTATCTGATACACA 109034 30 93.3 36 .............T..........A..... TTCTGAAAGTCTACACCACTTACATCCGGATTCTCC 108968 30 96.7 35 ................T............. CTCATAAACAGCACTTCACAGTCTATTTCTGTATC 108903 30 93.3 37 ...A............T............. TATGTAAAATAATAAGAAGAATTCACTTCTGGATTTT 108836 30 93.3 0 ................TA............ | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 97.9 35 GTATTAATAGAAACATCGTGGAATGTAAAG # Left flank : ATTGGCGAAAAAGAATATGAGGGATTCAGAATATGGTGGTGAGTTATGTATATAGTATTAGTTTATGATGTAAGTCAGGAAGAAAACGGTGCAAGACGCTGGTCAAGAATTTTTAAAATATGTAAAAAATATCTGACGCACATCCAAAATTCTGTATTTGAAGGTGAATTGTCAAAAGGACAGCTGGCACAGCTGCAAAAAGAATTAAAAGAGTATATTGATAAAGAATTAGATTCTGTAATTATTTTTAAATCTCGGCAGGAAAAATGGTTGGATAAAGAATTTTGGGGTAGGAAGGATGATTTAACGAGTTTCATATTATGATTGTCGACGTCAGATAGAGTAAAAACTTCAGGAGGTCGACAATGCTTGAGATATCAGGAAAATTTCAAAAATGAGAGCTGTCTAGAAAGATAAAAATAAGTATAAAATAATGAAGTGACAAGATTGACAGAAAGTGGTAAGATTATATCTGTATTGTAAGGATGAATAGACGACGG # Right flank : AAATTTTGATAGACGAATTCAATAACAATATGTTACACTTTATGAAAGTTAGAGTTTAATATATCAAATATAAAGGGAAGTGTGTCTATTGAAACAAATTAAAAAGAAACTTCCAATAGGAATAGAAAATTTCGCAAAGCTTCAGGCGGAAGATTTCTACTATGTAGACAAAACGATGCTTATCAAAGAACTTCTGGATAATTGGGCGGAGGTGAATCTGTTTACACGTCCGAGAAGATTTGGTAAAACACTGAATATGAGTATGCTGAAAGCATTCTTTGAATTAAACAGTGATAAGAATTGCTTTAGAGACACAAGAATTTCCAGAGAAGTTTATCTTTGCGAACAATACATGGGAAAGTTCCCTGTGATTTTTATTTCCCTGAAGAGTATCAGCGCGCAAACTTATGAAAAAGCCTGTGATATGGCAATTCAGATTGTGAATGGCGAGGCGCGTAGATTCCAGTATTTACTGGAAAGTGAACGTTTGACAGAATATG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAAACATCGTGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //