Array 1 981439-984213 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP078534.1 Salmonella enterica subsp. enterica serovar Borreze strain Colony528 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 981439 29 100.0 32 ............................. CGGTNNNNNNNNNNNNNNNNNNNNNNNCTCTG 981500 29 100.0 32 ............................. GANNNNNNNNNNNNNNNNNNNNNNNNNNNGTT 981561 29 100.0 32 ............................. CCCGCANNNNNNNNNNNNNNNNNNNNNNNCCT 981622 29 100.0 32 ............................. GCGCANNNNNNNNNNNNNNNNNNNNNGACGAT 981683 29 100.0 32 ............................. CCAAANNNNNNNNNNNNNNNNNNNNNNATATT 981744 29 100.0 32 ............................. AAGGGNNNNNNNNNNNNNNNNNNNNNNNCATT 981805 29 100.0 32 ............................. GTAGGCNNNNNNNNNNNNNNNNNNNNNTGAAC 981866 29 100.0 32 ............................. GTGGCNNNNNNNNNNNNNNNNNNNNNNNAGTC 981927 29 100.0 32 ............................. GAGGGNNNNNNNNNNNNNNNNNNNNNNCGGGC 981988 29 100.0 32 ............................. TGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG 982049 29 100.0 32 ............................. GCAACCNNNNNNNNNNNNNNNNNNNNNNCACC 982110 29 100.0 32 ............................. GGANNNNNNNNNNNNNNNNNNNNNNNNNGTTG 982171 29 100.0 32 ............................. AATGCNNNNNNNNNNNNNNNNNNNNNNNNNNG 982232 29 100.0 32 ............................. TGTTNNNNNNNNNNNNNNNNNNNNNGACAGCG 982293 29 100.0 32 ............................. TGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNG 982354 29 100.0 32 ............................. TTTAAGNNNNNNNNNNNNNNNNNNNNTCATGG 982415 29 100.0 32 ............................. CCATNNNNNNNNNNNNNNNNNNNNNNNNNAAA 982476 29 100.0 32 ............................. GCGNNNNNNNNNNNNNNNNNNNNNNNNNACGA 982537 29 100.0 32 ............................. CNNNNNNNNNNNNNNNNNNNNNNNCCGGTGGT 982598 29 100.0 32 ............................. GCCCNNNNNNNNNNNNNNNNNNNNNNNCACCA 982659 29 100.0 32 ............................. CATTGNNNNNNNNNNNNNNNNNNNNNNNNTAG 982720 29 100.0 32 ............................. CNNNNNNNNNNNNNNNNNNNNNNNNNNAATTT 982781 29 100.0 32 ............................. GTGNNNNNNNNNNNNNNNNNNNNNAACAGAAA 982842 29 100.0 32 ............................. GCAGCNNNNNNNNNNNNNNNNNNNNNNNNACA 982903 29 100.0 32 ............................. GTGTNNNNNNNNNNNNNNNNNNNNNNNNTTCT 982964 29 100.0 32 ............................. AGCCCNNNNNNNNNNNNNNNNNNNNNNNCGGT 983025 29 100.0 32 ............................. CCATNNNNNNNNNNNNNNNNNNNNNNNAAGCC 983086 29 100.0 32 ............................. TGNNNNNNNNNNNNNNNNNNNNNNNNGGTGCG 983147 29 100.0 32 ............................. NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCA 983208 29 100.0 32 ............................. GGCAGNNNNNNNNNNNNNNNNNNNNNGCGGTG 983269 29 100.0 32 ............................. CGANNNNNNNNNNNNNNNNNNNNNNNNNTAAG 983330 29 100.0 32 ............................. GAATNNNNNNNNNNNNNNNNNNNNNNNNNNGC 983391 29 100.0 32 ............................. AAATTANNNNNNNNNNNNNNNNNNNNNNAATG 983452 29 100.0 32 ............................. GAATNNNNNNNNNNNNNNNNNNNNNNNNGAGC 983513 29 100.0 32 ............................. AAATTANNNNNNNNNNNNNNNNNNNNNNNATG 983574 29 100.0 32 ............................. ACTCANNNNNNNNNNNNNNNGCATTAACTGTT 983635 29 100.0 32 ............................. CTGGGTGNNNNNNNNNNNNNNNNNNNNNGCGG 983696 29 100.0 32 ............................. AGATANNNNNNNNNNNNNNNNNNNNNNGAACT 983757 29 100.0 32 ............................. GGAGNNNNNNNNNNNNNNNNNNNNNACTGGAC 983818 29 100.0 32 ............................. CCANNNNNNNNNNNNNNNNNNNNNNNNNNCCT 983879 29 100.0 32 ............................. TGNNNNNNNNNNNNNNNNNNNNNNNNNNNGCG 983940 29 100.0 32 ............................. CNNNNNNNNNNNNNNNNNNNNNNNNATGACCA 984001 29 100.0 93 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATATGTGTTYCCCGCGCCAGCGGGGATAAACCGGGTTAACCAGGGGTTTTTCCCCACTATTTCGC 984123 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 984184 29 93.1 0 A...........T................ | A [984210] ========== ====== ====== ====== ============================= ============================================================================================= ================== 45 29 99.8 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //