Array 1 99507-98156 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCS01000003.1 Photorhabdus heterorhabditis strain VMG contig003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 99506 28 100.0 32 ............................ CAATCGTGGCACCGACAATTAAAACCGCCAGG 99446 28 100.0 32 ............................ TGGTATAGTCATTGGACTCCTGTGAGTTCTGG 99386 28 100.0 32 ............................ GATTCGCCCAATCTGATTAATTATCATTACAT 99326 28 100.0 33 ............................ TGTAAAATTCGTAACGAAAAGCTTTTTCATAAA 99265 28 100.0 32 ............................ ATACGCTGGAAATCTCTGACGCATTGATAGCC 99205 28 100.0 32 ............................ ACACTAAAAGAGCTAGCATCTAACGTATAAAA 99145 28 100.0 33 ............................ TAATCTATTACGATAGAAGAAGATATCATTAAT 99084 28 100.0 32 ............................ ACAATTAAATTCTCTCTGCAATTAACTCACTA 99024 28 100.0 32 ............................ CTGTTTAAGCTGCCACAACGCATACAAGCAGA 98964 28 100.0 32 ............................ TACAGCAGAGGAAGATGATTGGGATAAAAGGC 98904 28 100.0 32 ............................ ATTAAGGTTTTCGCTATTTGAACGGTCTTCCT 98844 28 100.0 32 ............................ TAGAATCTTTGTTGCTGGCGTCTTTGCAATAG 98784 28 100.0 32 ............................ CTCGCTAAACCAAAAACAGCTGTAATCAGAAC 98724 28 100.0 32 ............................ GTTTTCGGGAAGCTGGATGCTGTTTGTTGTTT 98664 28 100.0 32 ............................ GTGCGTAGTACCACCTAAACCTTGGGTCTCTA 98604 28 100.0 32 ............................ TGACTCTCAAGCGTGGCGAACTGACGACATGA 98544 28 100.0 32 ............................ AAAAGCAAATACTTTACCTTTATACTCTAATA 98484 28 100.0 33 ............................ ATGCCATTAATATACATATCAACCCTCACTGAC 98423 28 100.0 32 ............................ GTTTCTTTGCAGCGCGGGTGAATGATGATTTT 98363 28 100.0 32 ............................ TTACGCCAAAGTAATTGGTGTTACAGCGACAC 98303 28 100.0 32 ............................ AGTAACAATCGCATACCTGAAAACTTCTCCGC 98243 28 100.0 32 ............................ AGAGAATTCCCTCCGCAAAGGATGGTGTAACT 98183 28 78.6 0 ...........T.........AGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGTAAATGATTACCAACAAGAAAAGCAGTTTCGGAGAGATTGACTTCCATGGCAATAGATAATAGTGCCTCATTTGAAAGCCAATTATCCAATATAACAACAGCGGCTGGATTGCCGGAAAATAGGTGATCTGTGAATGCATCAACATGATAGATGGGTAGTGAAGTCATTTAATTCTCTCTTAAAATAGAATTATCTATAGGGTCATGAAAAGGGATCAATGTTTTTAATTTTTATTCAAAAATTACCCGCTATTTTATACAACTATATGTAATTGGAAAGAGAGTAAGCTGCACAGTTTTAAAATATTTAGTTGGTTTACCGAAACATTGGGTATCGTTGTGTTAACCAGATATGGGACCCTATTTTGACCCTTTTTTTGTGGTTTGTTATAACTTGTTGATTTATCTATAATATTATTTGGTGCTTATAAAAAGGGTTTTTCTGCTTTTTGTCATTATGTTCTTTAATAATCAGTAAATTAAAGTTAGTATCTAACA # Right flank : TCGATTGAATGCGCTAAATGCTTCCGTCTAAATATGCATCATTTCTTGTGCTTCTGAGCATATTCTTCACTATTAACCCATTGATGATCCTTTTCCCAAGTAAATAACCAATTACGGGTTGGTCCTGCCATGACATTGAGATAGTAGTTGTCGTAACCGGCAATGGTTGCTACCGGATGATAGCCTTTGGGAACCATGACCACATCTTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCGTCGGTATAGATGCGTTGTATACAGAATCCCTGAGGTGGGTTTAAACGATGATAATAGGTTTCTTCCAGATAGGTTTCCTGTGGTTGATTATCCGTATCGTGTTTATGGCTGGGATAGGAGCTGGTACAACCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCCGGTTTGTTATCCGGTAGGATGTTGTGAACATAGCGCTGGTTATAGCCATTTCCACGTTGTTCTGCATCAATATCCTGTGGTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 111314-111044 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCS01000003.1 Photorhabdus heterorhabditis strain VMG contig003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 111313 28 100.0 33 ............................ GAACAGTTTTATCCATAATTCTTTAATAGGGAG 111252 28 100.0 33 ............................ CGGTGGGCTATTTCAGATCGTGTATGGCAATGG 111191 28 96.4 32 A........................... TGACTCCAATTGTTTAGATAAGAAGCTCCGAA 111131 28 100.0 32 ............................ AAATACCATTTTGAATATTTCCGTCTTCTAAG 111071 28 89.3 0 ......................G...GT | ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.1 33 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAATGTAAAAAATGTGGAATAGTAAAAATCGTAATAAATTATTTAAAGGAATTCGAGTTTTATTTGTAGGGCAATAATATTACATCCATTACTTTCATCCAGAGTTATTTAATTCTATTTTTATATGGTAATTATACAAGAAGAGAATGAAATATGATGTATTCAGTTAAAAGTGGCTAATATCATACGTTGGTAAATATACTTAAAAATATTAGGTCAGCATATTCTAAATAGAGTGAGAATAAAATTTATCTTATTTGATGGTTCTATCATGGCTGAACGTTTTGCGATCAATTCTTTCACTTACTGCATAGACATTAGAACGGGCGATTTAAGTGAGTGATGGTATTTTTACTAAACCCTATTTTTACCCTTTTTTTGAGGTGAATTATAACTAATTGATTTTATAGTAAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAACAGTTATGCTCTTTGAAAATTAGCAGGTTAAAGTTAATATGTAACAG # Right flank : ATAATCACTCTCGTTCGGTAAAAGCCTTATATTGTAGGTTGGTAAAGAATTGTAAATTATTATGATTTGCATGTGCGATATTTTACCTTGTATAAAATTTATGCATAATGTTTTCCATAAGTTAAATTAACTATTCAGGTAATTCTTAATTATGGATAACAGCTTTTCTCCAAGTGACCTCAAAACGATTTTGCATTCCAAACGCTCTAATATTTATTACCTGCAATATTGCAGAATATTAGTTAATGGTGGCCGTGTTGAATATGTCACTGATGAGGGAAAACAATCACTATATTGGAATATTCCAATTGCAAATACCACGGTAATTATGTTGGGAACGGGGACTTCTATTACTCAGGCGGCAATGCGTGAATTTGCTAAGGCAGGGGTTTTGGTCGGTTTTTGTGGTGGTGGAGGTTCACCACTGTTTGCGGCTAATGAGGTTGAAGTTGATGTATCTTGGCTGACACCACAAAGTGAATATCGTCCTACTGAATATT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 126108-124760 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCS01000003.1 Photorhabdus heterorhabditis strain VMG contig003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 126107 28 100.0 32 ............................ TTAAATTGACTGAATTTGCCGCCGGGATTAAA 126047 28 100.0 32 ............................ CAGATACGGCGCGATTTGATTGACTTGGGGAT 125987 28 100.0 32 ............................ GCCCCCGGATATTGAAGCGAGATAAACACTTA 125927 28 100.0 32 ............................ AACAGCAACATCATCACGCAAAGTATCGATTT 125867 28 100.0 32 ............................ GTATTGGAACGCTGGTGTATCGCGTATGAGTT 125807 28 100.0 32 ............................ TATGCACTCAGAACAACACGAAAAGCAACAAC 125747 28 100.0 32 ............................ AACGCCACCGTCTCCACCAAACCGAGGTTTTT 125687 28 100.0 32 ............................ TTTTGAGGCAAGCTAAGGACCTGGCATAACTT 125627 28 100.0 32 ............................ CCCAAAATTAGTGTTGCGGTTCCCATATCAAC 125567 28 100.0 32 ............................ AACCGGACTGGATCGCTAAGCCGTCTTCACCT 125507 28 100.0 32 ............................ GACAAATAAAAAATTGTCACTCGCTTACAACG 125447 28 100.0 32 ............................ GCCGGACTGGTTTGCCGAAAACAATTTGAATT 125387 28 100.0 32 ............................ GTTTCATCGTGTTCAAATTTCACCGGATACCG 125327 28 100.0 32 ............................ ATTGCTAAATCATTAGCACCTTGTTCCCATGC 125267 28 100.0 32 ............................ GCAAGCACAAGCGGGAAATGGGATGGTTGCCG 125207 28 100.0 32 ............................ CGGATGAGCCATAACACTCTCACGCATAATTT 125147 28 100.0 32 ............................ TCCGTGCTGACGACTGCTGATGAATTACAGCG 125087 28 100.0 32 ............................ GTACCAAGTAATTGATAAGATTGAATCAATGC 125027 28 100.0 32 ............................ AGTTAGGATGGTCCGTATAGATGGAGAGTCTT 124967 28 100.0 32 ............................ AAACCCACACTGAATGAAACGGCACTGTCTTT 124907 28 100.0 32 ............................ CATATGCATCATAATTAAATTTATCCATTGCT 124847 28 100.0 32 ............................ ATCCGGTCGTGCCGTCTGCTACCCCTCCCCAA 124787 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTAATGTCTAAGTTGCCCAAACTTAAGAGGTTGGGTGGGAAACATCACTAGGTTCCAAGTATATATGACTTATTCCTGACAAATATTTACAGGGTCCCGGAATCATCCGTCTCTGGATATCTTATATACCCAATAGATTTCAAGATGCATCGCGACGGCAAGGGAGCGAATCCCCGGGAGCATAGATAACTATGTGACCGGGGTGAGTGAGTGCAGCCAACAAAGAAGCAACTTGAAAGATAACAGGTATAAACTCCATTTTTCACATTATATTACAATATATTAAGGAAAATTTAGCTATTTCTGCGACAGCTAAAAGCTACCAAATATTGCTATAAGATATGGTGTTTCTACTGCACCCTAATTTTGACCCTTTTTTATCGCCAAATAATAACCTATTGATTTTTAATTAAAATAAAGTATCTCTTATAAAAAGGGTTTTTTCACTTTTTATGATTATACTCTTTAACAGTCAATGGATTAGAGTTAATATGCAACAA # Right flank : ATGGTGAAACACGACGAATATTAGAGATGGAAATCCGTAAGACATTATGGATATGCATCATATTTTTGTGGCAATGGCAACATCTATTACTGAAGTTGGTAGGGATCATGATTATGATTGGAACATTGCTGAACTGGGTTCAACGCGCTCGTTGATACAACTTGTCGAATGTATTTAAAGCAATAGGCAAAAAGAGGCACAGATGCTTAGGTGGTACAAGTAGTTTAAAAACACAATAAAGGTTAGTTAATTGCGTAGTCGTGGAGCCAGTAACTGATTGCGGATGGATTCTGCTAGCTCGTCCAGAGAAGGTTGTTCTGGATGGTCATCTGATGTTTCGTAGGCTAATTGCGCTTCGGCTAAATAAGTATGTACGGGTTGGCCGTCGTCATCTTCCATCACAACATGATACCAAGGAGCAGAACGCAAAGCAGCATTGGATGCAATGTCATCCTCTTGAGGTTGTTCCAGAGAATATTCCACATCAATGTCTACGATCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 14655-11924 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCS01000076.1 Photorhabdus heterorhabditis strain VMG contig076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 14654 28 100.0 32 ............................ CCACCGCTATACGCCCGCCGGCTATCTCACAT 14594 28 100.0 32 ............................ CGATAGCTCACAAAGGGAAAGGAAGCCGTCGC 14534 28 100.0 32 ............................ AACTTTTGTGATGCAGCTAATACACTGCTATT 14474 28 100.0 32 ............................ ATATACACCGATTGAGTACATAACTTTCAATC 14414 28 100.0 32 ............................ TGCAAAATCACATGCATACAGTATTTGTTGTG 14354 28 100.0 32 ............................ CATCGTGTATTTATTCTCGGAAATCCTGAAAG 14294 28 100.0 32 ............................ ATTAACAAACGTATTGGTGATGACAAATGACA 14234 28 100.0 34 ............................ CCACCCGTTTGCTATGCTTGTGTTAATTACATCA 14172 28 100.0 32 ............................ TGGATGCCGACACCCCTGATGGTCAAATGATA 14112 28 100.0 32 ............................ CGTAGCCGCTCTTTATTATACAGAAGGTCATG 14052 28 100.0 32 ............................ ATCTGGAACGTAAGGTTGAGCATTCCATACTT 13992 28 100.0 32 ............................ TCTTTATTGTTCAATGTCTCTAGTGTACGAAT 13932 28 100.0 32 ............................ ATTCAGTGCGAATCATAAGACGACCAATAACA 13872 28 100.0 32 ............................ GAGCGGAATACCTGTAAACGGGTGCATGCCAA 13812 28 100.0 32 ............................ GTCCTAAATTTCCAAAGGATCACTATGTTTAA 13752 28 100.0 32 ............................ TCTTAAGTCAATTGTCAAGTTCGCATTAGCAA 13692 28 100.0 32 ............................ GGGTGTTAGCCGCAATTGCAAATACGGAAAAT 13632 28 100.0 32 ............................ TGAATCACTTTTAAATTATATTTGCATTGCAA 13572 28 100.0 32 ............................ TGTTGCTCCTATTCTTTCGAGCTGCGTTAAAA 13512 28 100.0 32 ............................ GTCCTCGCGCGATTTTCTTTTTTATGATCTGC 13452 28 100.0 32 ............................ CAAAGCTCTTTGATAAAAGAATCAACGCGAAT 13392 28 100.0 32 ............................ TATGCGTGGTGATGGGGTTGGGTTATCTCGTC 13332 28 100.0 32 ............................ ATAATGAGAATGATAAAGCGCAAAGATTTCTT 13272 28 100.0 32 ............................ TCACCATGGAGCAAATACATGGCTTTAACCAT 13212 28 100.0 32 ............................ CTAATGGTATAACTCAGCCTAGAAGATTAACT 13152 28 100.0 32 ............................ AAAGACTTAATAAGCTCACTATCTAGTTTTGT 13092 28 100.0 32 ............................ ACTAACGGCCACGTCAGTGCATGGAGGAAATC 13032 28 100.0 32 ............................ AACGGCGTATATCAATCAGGGTGAAATGCTGA 12972 28 100.0 32 ............................ ATGGAAGGTGAAAGGAAGAATCTTAGAGATGA 12912 28 100.0 32 ............................ GCTAGTATGTTAACGGGAAGCCAATTAGTTGT 12852 28 100.0 32 ............................ CAATCAAACCACGGTCAAAGTGGCGGATAAAA 12792 28 100.0 33 ............................ ACCACATTGCCGATACACCACGTCATGATCGGG 12731 28 100.0 32 ............................ AATGACTATATGTTTCATTCAGTCCTCTTAAA 12671 28 100.0 32 ............................ ATTAACTTGCGAGCCACTTGTGATGGCTTAAC 12611 28 100.0 32 ............................ CGAGTTTGTCAGGGCAATGATAACAAACCCCC 12551 28 100.0 32 ............................ TTCCGCTAATACCTTTGTACCTAACTGTTGTA 12491 28 100.0 32 ............................ TATAGCAAAGGTATACTTCTGCTTAGAGAATT 12431 28 100.0 32 ............................ CGAAGGCACACCAGTTAGCATCGTTACCCGGA 12371 28 100.0 32 ............................ ATCAGCAAAGCTAGCACCTTTCAAAAAGTCAC 12311 28 100.0 32 ............................ AAAGCGCTCAATTTCCTGAAGGAGTGTTTTGA 12251 28 100.0 32 ............................ CAACGTGGCATGTGAATTGACGGTATCCACTT 12191 28 100.0 32 ............................ TTTTCGCTGTGTGCCTTTGATGAGTTAAATTT 12131 28 100.0 32 ............................ TACAGCAGAGATAGATGATTGGGATAAAAGGC 12071 28 100.0 32 ............................ CACTGAAAACATGCGCACAACCTTGACCTGAT 12011 28 100.0 32 ............................ CAGAGGTTGGATTTAAGGTATATGCATCATAC 11951 28 89.3 0 .................T..T...T... | ========== ====== ====== ====== ============================ ================================== ================== 46 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTTGGGATACTCTCTTGGTGAAAAATGGCAGGGAAAAGGGCTGATGTATGAAGCTTTACAGCCAGCTATTCGTTATATGCAACGTCAACAGGGGATACATCGGATTATGGCTAATTATATGCCAAATAATCATCGTAGTGGAAAATTGTTGGAACGATTAGGCTTTGAACGAGAAGGTTATGCCAGGAAATACCTGATGATCAATGGAGTCTGGCAAGATCATGTATTAACGGCATTGACGGATGAAAAATGGAGTGAAAAAAGTTGATGCTTAAGCTGTATTGCCACCAGATAAAGTGAAGCGGATTAGTAATGATGAATTAAATTACTGTTGAAAATCTGCCAGGTTCCCCGCACCTTATTTTTGACCCTTTTTTAAGAGGCGATTTTAATTTATTGATTTTCAATGGAATATTATTTCTCTTGTAAAAAAGGGTTTTTTCGTTGTTTTATTAAAATATACTTTAACTGTCAGTAAGTTAAGGTTAATATGCAACA # Right flank : AGTTAATGATTTATAGCGTAATGAGTTCTAGTGCATAAGCATGTGTTTATGTATACTCGCCGCGCTTATTAATAAAGTGGATGATTAGTCATGAATAATATTACCGCCTTGTCTTTGGCTGCTGTAATGTTTACTAGCGGTTGCGCTACGATTGTGGGGGATAAAACTCAGCATATTCAGGTTGATAGTAATCCATCAGGAGCCACATTCTCCATCAAAGATGAGTTAGGCAGGGTTGTTGCACAAGGGAAAACGCCTCAAGATGTGATTTTAGAGAAGTCCGACGGGAGTTATTTTGGTAAGAAAGGCTATCTGGTCTCTTTTACTAAAGAGAATTCTGAGTCTGTAACGTTACCAATTAAAGCGAGCGCTAATGGTTGGTATATTGGTGGTAATTTTATATTCGGTAGTTTAATTGGTTGGCTCTTATTTGATCCGTTTAATGGCGGGATGTATACGCTGCATCCAAAAGCAGTGATCGCTGAGCTACCTCAGACTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //