Array 1 773885-775124 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013341.1 Nitrosomonas ureae strain Nm10 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 773885 37 100.0 32 ..................................... TTCCTTTGCATCGTACCAGTTAATATATATTC 773954 37 100.0 35 ..................................... AAAAACTAATTCAGTTAGTTTGATTATTTTGTAAA 774026 37 100.0 34 ..................................... CTTTACTGCTTTACTGCTTTACTGCTTTACTTAA 774097 37 100.0 32 ..................................... CTGCTTTACTGCTTTACTTAATAATTTCTAAT 774166 37 100.0 34 ..................................... TTCTAAAGCAATAAGGATATCCTGCTCTTTTGAA 774237 37 100.0 34 ..................................... GCAAGTGTATAAAAGTAGCATCTTTTATATTATG 774308 37 100.0 32 ..................................... CATTTTCCAATAGTAACAGCCATTTTTAAATT 774377 37 100.0 35 ..................................... TAATTCATCTTGAGCGAGTGATATTTTCCCACGTA 774449 37 100.0 35 ..................................... TTACGCTCCTGCATTAAGTACTAACCTGAACGTTG 774521 37 100.0 32 ..................................... TCATCATCTAAGTAACCTTCTGTATGTGGTGA 774590 37 100.0 35 ..................................... TTTTCACTGCCCTTAAAATTCGTGAAATTTTTGGC 774662 37 100.0 35 ..................................... ACAATATAAAACATTATAGTTCTTATAGCCTTGGG 774734 37 100.0 34 ..................................... AAACAAAATACTTCTACTTTAAATCCTTCTACTT 774805 37 100.0 35 ..................................... GCGGATGCAGTTAAACAGTTTTATACTTCCGAGCT 774877 37 100.0 33 ..................................... AAAAATTAATTAGTGATTTAAACATGCTTAGAT 774947 37 100.0 35 ..................................... CGCAGCGGATCGTCGGGGATTATCCAGTAAGCGTT 775019 37 100.0 32 ..................................... AACTCGGATCATCACACCAAGCTTTGATAGCT 775088 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== =================================== ================== 18 37 99.8 34 GTTTGAACTAAAGACCTGATTAAGAAGGGATTAAGAC # Left flank : CGATCCGCAGATGCGCTTCATCGCCAACGGCGGCTGGCTTGAAATGCATACGTATGCGGCCTGTCTTCAGCTCAAACAGAAATGTGGTATTCAGGATGTGGCGTGCAACATTGTTATTCAACGCCATCCGGCAGGTAAAACTGCGGTAAAAAATGAAATCGATGTTGGCCTGATTCATGCCAACCGCTTGCATTTGATCGAGTGCAAAACGAGGCACTTTGAAAAGGATGCAGATATGCTGTATAAACTGGATAGTCTGCGTGATTTGATGGGCGGTCTGCAGGGCCGTACGATGCTGGTCAGTTTCAACAATCTCGGCAAAGCCAGCCGCGCCCGTGCCAGGGAACTCAATGTTTCTTTGTGTTGTAAAACTGAGTTGAAGCACTTACAGCAACATCTAACCAATTGGCTAACCACGCGAGGCTAACTTTTTAAAAATGAAATTTTTTGTCAACCCTCTCTATAAGCCTATGAAAAATAATGCAGAAACGAATCATGCG # Right flank : TGCCGATCATGTGAGATATGCTTACCGCGGGGTTGATAAGGATGAAGCTTGCTTGTGAGTTGATGGGCATACCGAAAACCTTAGAGGTATTTTCAATTCACTATAAATAGCTCATTCCAATCAGTAAGTACTATACCTTAAGTGTCATACCGTATATAAATCATTAGCTTAAGTTGTTAGTATCAATACTCACCCACTTATTTGGAGGTGTATCATGTCAACACAAATCTTTCATTATCATAAAACTGACCGTGTTAATGTACCCGTCATGTATTATATTTTGATATATGGTCAGATAATTGCAGGTCTAATTTTGTGGAGTGTATAAGTATTTTTAACCAGCCTTATAAACCTGCTCCGGCAGGTTTATAGGTACGCAATCCAACAATGAGTATTTTTATAAATTCGGATAATAATGATTTCAATCTTAATATAAGGAATTATTATGAATTTACTCGAATTAGGCGAAACCGTTCTTCCCTTTTCTATTCCCTCATATA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAACTAAAGACCTGATTAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 2891513-2891939 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013341.1 Nitrosomonas ureae strain Nm10 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 2891513 32 100.0 38 ................................ TAACTTTGCATGGCTTTCGCGCAGCTGACTTACCGCGA 2891583 32 100.0 32 ................................ ATTGGCGATCCTTGGTTGAGTCCTGCTGGTTC 2891647 32 100.0 33 ................................ TGCTGTTAACTTGGGTTCAAGGGGTGGGTATGA 2891712 32 100.0 33 ................................ ACCTCTTCGTATCGCTCATTTTATAGCTCAATG 2891777 32 100.0 32 ................................ ACACCTAAAATTTGATGAGATGAAGGTTATTC 2891841 32 100.0 35 ................................ AATACATCTATGAGTGAAATGGGGTCGCACTTTGG 2891908 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 7 32 100.0 34 GTCGCGCCCCGCGTGGGCGCGTGGATTGAAAC # Left flank : TGCCTTTTCTGTGGAAATAATTTAGAGGTTCTCAGATGATGATTTTAGTGACTTACGATGTCAGCTTTAAAACCGATACCGGGCCAAAACGTTTACGAAGGATTGCAAAATTATGCCTAAACTACGGCCAACGAGTACAGTATTCAGTATTCGAAATAGAGGTTGATATGGCACAATGGACAAAGCTAAAAAATGAACTAATCGATGCTATTGATGAAGAATTCGATAGCTTAAGATTTTACTACCTGGGAAATAACTGGGAACGGCGTGTTGAACATATTGGCGCTAAAACAGTATTAGATTTAAATGGCTTGATATTACTGTAATGCGAATCCTAAGCGAGCATAAAAGCATCAATATTTTTGCATCCATTAAGATAATGATTTTTCTTATTTTTTATTTCAGCAGTAAATAATTTATAATACTTTTCGCAAATGCTTTCATTGATTCGCAATTTATTGGTTTTTTAGCCAATGATTTCAATCAATTAAGCATACGCT # Right flank : CACCCGTTATTAATTCGACCATATCAACTGCCAGCACAGTGGTGTACGACATGACACAAAAGGTAAAGAATTACTCTTTGCTTTGGCTTCCGCAGCTATTCATACCTACTTCGTTATAGCTCGATGTTTCATCACTTTTCCCATCCGCTCAAAGAAGCCGTCTAAAGCAATTCAACGGCAAATTGGATTAGATGTATTCTGAAAGTTTAGCGTATTACAGCAAATCCAAGAATACAGAGATCAAGAGAATATACAATGCAGTAATATTTACAGTAACTCTTTTAAAAACAATAAATATTCTATGTCTGTCGATGTTTTAGATTCCGGCCTTGGTTGAAATTTCATGTCATATCAGACTGCAAAGCTAAGTTTCTCGGATTTTTCCAAAGATAGAAGTAATTTAACTAACCCTAACCTAGTAGCGATTCAATATGATTTCCAGCACAAATTTACTGCCGATATAGGCTAGTAATAATATAATGAATCCGATTAATGTCCAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGATTGAAAC # Alternate repeat : GTCGCGCCCCGCGTGGGCGCGTGGATTGAAACT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.30,-8.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //