Array 1 15958-15075 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEVU01000104.1 Salmonella enterica isolate STY180, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15957 28 93.1 32 -.T.......................... TGACGCTGGTCTATACCGGCAACGAACGCGAC A [15954] 15896 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 15835 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 15774 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 15713 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 15652 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 15590 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 15529 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 15468 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 15407 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 15346 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 15285 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 15224 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 15163 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 15102 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 96.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 81436-79532 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEVU01000008.1 Salmonella enterica isolate STY180, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 81435 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 81374 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 81313 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 81252 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 81191 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 81130 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 81069 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 81007 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 80946 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 80885 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 80824 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 80763 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 80702 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 80641 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 80580 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 80519 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 80458 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 80397 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 80336 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 80275 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 80213 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 80110 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 80049 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 79988 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 79927 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 79866 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 79805 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 79744 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 79683 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 79622 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 79561 29 96.6 0 A............................ | A [79534] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 683-44 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEVU01000027.1 Salmonella enterica isolate STY180, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 682 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 621 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 560 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 499 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 438 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 377 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 316 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 255 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 194 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 133 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 72 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTGACGCTGGTCTATACCGGCAACGAACGCGACGTGTTCCCCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //