Array 1 242984-241373 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJYCB010000001.1 Salmonella enterica isolate 5797_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 242983 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 242922 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 242861 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 242800 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 242738 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 242677 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 242604 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 242543 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242482 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 242421 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 242360 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 242299 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 242238 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 242177 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 242116 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 242054 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241951 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241890 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241829 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241768 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 241707 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 241646 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241585 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241524 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241463 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241402 29 96.6 0 A............................ | A [241375] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 261097-259116 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJYCB010000001.1 Salmonella enterica isolate 5797_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 261096 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 261035 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 260974 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 260913 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 260852 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 260791 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 260730 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 260669 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 260608 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 260547 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 260486 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 260425 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 260364 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 260303 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 260242 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 260181 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 260120 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 260059 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259998 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 259937 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 259876 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 259815 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 259754 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 259693 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 259631 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 259570 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 259509 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 259448 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 259387 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 259326 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 259265 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 259204 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 259143 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //