Array 1 347651-350198 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQLE01000002.1 Listeria monocytogenes strain Lmo5965 NODE_2_length_355479_cov_86.834892, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 347651 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 347717 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 347783 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 347849 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 347915 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 347981 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 348047 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 348113 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 348180 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 348246 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 348312 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 348378 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 348444 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 348510 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 348576 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 348642 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 348708 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 348774 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 348840 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 348906 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 348972 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 349038 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 349104 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 349170 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 349236 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 349302 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 349368 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 349434 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 349500 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 349566 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 349632 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 349698 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 349764 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 349830 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 349896 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 349962 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 350028 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 350094 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 350160 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [350185,350191,350194] ========== ====== ====== ====== ==================================== =============================== ================== 39 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //