Array 1 74126-73912 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR027520.1 Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 74125 29 100.0 32 ............................. AGTCTCAGCGGAGAAAGCGTCAGACAGGTCCC 74064 29 96.6 33 ............................A AGATCTGGCAGATGAGTGAGAGGGAACGGGAGC 74002 29 100.0 33 ............................. GACACCCTCTATCTCACCCTGGCCGACATCGGC 73940 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================= ================== 4 29 98.3 33 GTAGTCCCCACGCGTGTGGGGATGGACCG # Left flank : AGATCCCACCCGTCCTGGGGGCCTATGGGACCTCGAGGGCGAGGTGGAGGGCGGGGTGGCCTATGGTGGTGATGATCCTGGAGAAGGTGCCGAGGAGCCTGAGGGGTGACCTCACCCGCTTCCTGGTGGAGGTGGACACCGGCGTCTTCGTGGGCCGGGTCAGCGCCACGGTGCGAGAGCTCCTTTGGGAGCGGGCCGTGGAGAAGGCCGAGGGCGGCCGGGTGGCCCTCGCCTACCGGACGAACAACGAGCAGGGCTTCGCCTTGCGGCTTCACGGCTACCCGGACCGCTTTCTGCGGGACTTTGATGGTATAGTGCTGGTGAGCGTTCGGAACGCCGAGGCGGCGCGGAAGGCGGAGAAGCTGTCCAGGCAGGTTGAGAGGTACAAAAAACGCCTTGCCAAGGGTTCCGAAGGGGATCTTGAAAGCCAAAGTCCGTAACTGCTCCCGAATAGACACATAAACGGGGGTGAGCGGGCGTTTTCGCCGTCCTGGTCATGT # Right flank : GCGCTAGAAGGCCCTCACCTCCACCCCCGCCTGCTCCAGGGCCTCCCGCACCGCCCTCGCCACCTCGGGGGCGTTGGGGTTGTCCCCGTGGATGCAAAGCGTCTCGGCCTGCACCGCCACCTCTCCCCCGTCCAGGGCCTCCACCCTTCCCTCCAGCACCATGCGCAAGGCCCTCCGGGCCGCCTCCTCGGGGTCGGTAATCCAGGAGCCCGGCATGGAGCGGGGGGCGAGCTGGCCGTTTCGCAGGTAGGCCCTTTCGGGAAAGGCCTCGAGGACCACCCTGAGCCCCGCCTTCCGCGCTTCCTCCTCGTACACCGTCCCCGGAAGGACCACGAGGGGAAGCCCCGGGTCAAAGGCCTTCACCGCGAGGGCGATGGCCCTCGCCGTTTCCCGGTCGCGGCAGGCCTTGAGGTAGAGCGCCCCGTGGGGCTTGACGTGGTGGAGAGGAAGGCCCTCCGCCTTGAGGAAGGCGGAGAGGGCCCCGATCTGGTAGAGCACGT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCGTGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 84786-85248 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR027520.1 Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================ ================== 84786 29 100.0 32 ............................. ATGCTATCCAAAATGCCGTCAAGCTTAGCTTC 84847 29 100.0 33 ............................. CTCGGCCTCGTGGACGACGTGAACCGTGCCAAC 84909 29 100.0 33 ............................. GCCGCCCTGTGGTTCCGCTACGGCTCCGGGCGG 84971 29 100.0 32 ............................. TAGAGCTCCTCCAGGGTCTTGGGGCGGTCCCT 85032 29 96.6 160 ............................T GGGTGGTAGGATGAAGGCAAACCCACCGGGCTGGGCCTGGGTTCCCGATAGCCCGGTGCAGGACGCGCGGCCCTCCAGGGGGCCGTTGCCCTTTTATGGCGGAGGAACTCCACCCTTCTGGTCCTGCAAATAAGCGCAGTTCCTGGTCTCTATGGGGGTC 85221 28 75.9 0 .....G...T.GCA..-.....C...... | ========== ====== ====== ====== ============================= ================================================================================================================================================================ ================== 6 29 95.4 58 GTAGTCCCCACATGCGTGGGGATGGACCG # Left flank : GCATGCGGGCGAGTTTGTCCAGGGCCAGGCGGTACTGGCGCGTGGGGGCCTGGTGGTAGAGAAGCCTTCCCGCGGCGAAGAGGGCCAGGGCCTCTATCGGGTGGAGGGAAGGAGAGCGGTCGGCGATGCGGTAAAGCCCCCGGGCCAAGCGCTCCACGGGAAAGCCAAGGTCAAGAAGGGCCTCGAGGTCCCGCTCCACCGTGCGCTCGCTCACGCCGAAGCGGCGGGCGAGTTCCCCCACCCGCATGGGCCTGAGCTTCAAGGCCTCGGCCATCTGCAGGAGGCGGGCGCTCTTGGCCTCTTGTCCCATGCATGTATGCTAAGCAAGCCCTCCGGGCCAGGGTGTGATTTTTGACCATGCTATACTTGGACCAGCGCCCACCCTGACCTTTTCCCCTCCCCCGCTCGGGCGCTGGGGAACTTGACAGAAAAACCTGCAATCCTTCCCAAATAGACACATAAAGGGGGGTGAGCGGGCATTTTTGCCGTCCTGGTCATGT # Right flank : GGACACCCCTGGCGGCAACTCTTCCGTCCGACGGAAGCTTCCCCGGGCCGTAGACTGCCCTCATGAAGCGAAACGCTTGGGAGGTGTACGGCGAGGTTCTTAAGACGGCCCGGGAGCTTGGCCTCGAGGGGGAGGAGCAAGAGGTGGCCAAGGCCCTCCTCGCCTGGCCCAAGGAGCGCTTCCGCGCCTTCGCCGCCCGGGTGGGTCTGAAGGCAAAATACCTGCGGCACGACCTTCTCCCCATCGCCCTTCTTCCCGAGCCCCTGCGGGAGGCGCTGCAAAAGGGGCTTCCCCTCCGGGAGGCCCACAGGCTCCACCGGCTCCTGAAGCGCGGGGACCTCTCCCTTCAGGACCTAACGGGCAAGGACCCCAAGGCCCTCATGGCCCTTCCGGCCAGGCCTGGGGAGGTGGACCCTCGCCTTCCCGTCTGGTTCTTCCCCCCCGAGCCCTGGGAGGAAGCCCTCCCCCTGGCGGTGGCCCAGGCCTTGGTCCGGCTTTAC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-2.79, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACATGCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 314212-311417 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR027520.1 Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 314211 36 100.0 38 .................................... AGGCCCTGGTGGCCCCCTTTCAGAGGTCCACCCGCCAC 314137 36 100.0 36 .................................... GAGAAGAAGGCGGAGGAGGCCCTCGGGGGAAAGCTC 314065 36 100.0 37 .................................... AAGTCCAGCCTCCTCTCCCTCCTGCAGGGGGTAGACA 313992 36 100.0 35 .................................... CCCCGGCGGGACTGGAACTTGGCCGTGAGCGCTTC 313921 36 100.0 39 .................................... ATCTCTACCCCCCGGTGCCAGTCCCACCCCCGGAGGAGC 313846 36 100.0 36 .................................... CCCGAGCTGGCGGTCCGCGTCGTAGACCATCGCCCT 313774 36 100.0 36 .................................... GTACTGCTTCATGAACTGCTCTATGGTCTGGCGCAT 313702 36 100.0 36 .................................... AGCGTGTGAAGCGGCTGTTCCTCGCCCTCGTGGGGC 313630 36 100.0 37 .................................... GTCCTGGAGGAGCGGGCGGTGGACTTCACCGCCCTGG 313557 36 100.0 37 .................................... GGCCTTGTGGATGAGCTCAACGCTAAGCACCGTTCAC 313484 36 100.0 38 .................................... TCCCTTCCGCCCGAGGCGGCGGAAGAGCCCCCTCCCTC 313410 36 100.0 40 .................................... ACAAAAAATCTCCGCGCCCTCTCCACGGGGTCGTCCTCTG 313334 36 100.0 39 .................................... GTAGTCGGCGGTGGTGGACCAGCCCAGCTTGAGCCACAC 313259 36 100.0 36 .................................... CGGAAAAAGGGCGAGGACGGCACCCGGCTCGGGGAG 313187 36 100.0 37 .................................... ACCCCGTGGTGGACAACGGGTCCTTGGACCATCTTTT 313114 36 100.0 38 .................................... TCCTGGCCTGGAAGCAGGCCCACGAGGAGCTGCCCCGG 313040 36 100.0 35 .................................... TACTGAACCTGCGCCTGTCTAGTCATTCGTATCAC 312969 36 100.0 36 .................................... CCCGACCTCTACCCCCCCGTGGAGGAGCTTCCCCGG 312897 36 100.0 37 .................................... TCCTCCACCGCCGTCCAGGCCGTGACCCGCGAGCGGA 312824 36 100.0 37 .................................... CTATGAGAGCCAACGTCTTCATCGCCTCAAGACGAAG 312751 36 100.0 36 .................................... GCTTGCGGGGGGTTCCCCGCCCTGACGCTGAGGCCT 312679 36 100.0 34 .................................... TGACGCCATGGAGGTCCCCGAGGACCTGCGCCGG 312609 36 100.0 37 .................................... CGCGGGTTGGGAGCGCTGGTGGCCCGCCCTCCGGGAG 312536 36 100.0 36 .................................... CCTCTCCATCGCCGCCGGGGTGGCGGTGCAGGGGGG 312464 36 100.0 34 .................................... AATCTGGTTCACCACCCCTGGTGAATCTGGTTCA 312394 36 100.0 36 .................................... GTCCTGCCCGTAGTTCCCCGCCGACGCCACCACCAA 312322 36 100.0 38 .................................... CCCCCTGGCCCGGCCCGTGGACGGCGAGCACTACCTGG 312248 36 100.0 35 .................................... TATTGCGAGATGTGTTGGGAGCGTGAGCGTGAAGA 312177 36 100.0 36 .................................... GCCTACCACCCGGCCTGGAGGTGAGCATGCAGGTGG 312105 36 100.0 38 .................................... TGCAGGCAGGGGGGACTGACGCCCCCCTGCACCCCCCA 312031 36 100.0 38 .................................... GGCGTGGGGGCATAGGCGGGTCAAGGCGCTCCTCCGGG 311957 36 100.0 34 .................................... GAGGTCCCCTCAATGGAGAGGACCAACGAGCTGG 311887 36 100.0 37 .................................... GGTTGGGGAGCCGGCCTCTCGGCGAGCACGTTGGGGT 311814 36 100.0 36 .................................... GTCCACTTCCAGAACGGCCTCCACTCGGGGGCTATA 311742 36 100.0 37 .................................... AGGGAGGGCAGGGTGGAGGCCCTGTGGGAGTTCTGGG 311669 36 100.0 37 .................................... TTTGCCGCCCTCTTCTTCCGCCCCCTGGCCCTCTTCC 311596 36 100.0 36 .................................... AGGAAGCTGTGAACGCCCTCTTCCGCCTCCAGGTGA 311524 36 100.0 36 .................................... ACGCTCCCCGTGCTCACCGGGTTTCCTGCCCCGAAG 311452 36 97.2 0 .................................T.. | ========== ====== ====== ====== ==================================== ======================================== ================== 39 36 99.9 37 GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Left flank : GCCTACGATACCCCCGATGACCGTCGGCGGGCGCGGCTTGCCAAGCTGCTCAAGGGCTTTGGCGAAAGGCGGCAGTACTCCGTGTTTGAAGCCCGGTTGACCCGGGAGCAGTGGGCCCACCTCAAGGGCAAGCTGGAAGCCCTGGTCAACAAGGAGGAGGACGTTTTGGCGGTGTACTTCTTGCCCCCGGAGGCGGTGGGACGCACCTGGCGCATCGGCCACGAGGGGTTGAAGCGCCTCGAGGACCCCGACTTCGTCTAGCGAGCGCGAAGGCCACCTTATGCAAACCCCCGATGCCATATCGGGGGTTTGTGCTGTACAGAAGACTGCTCTTTTGGATTGCATACTCGCCCTTTCCCCTCGTTCGCGTGCGCACTCGTCCTGGAGAAGGAAAGTCCCACTTTAGTCCCACGGCGCCTCCCCTAGCTTGACGCATAATCCCCTTGCGTGCGAAAATGGCCTCAAGATCCCCCGCCTGGAGCCGCTTCCTGGAGGGGGCC # Right flank : CCTTTCTTGTTGTATTCTTCGTCCATGACCGTGGCCGACCACCTGACCCTGAACGAGCTGTGGCGGAGGGTCAAGAAGGCCAAGGACCCGATAGAGAAGCATCGCTTCCTGGCCGTCTACCACGCCAAGCGGGGACTCACCGCCAAGGAGATCGCCAAAATCACCCTCAGCTCCATCCGCTGGGTCCAGGAGACGGTGCGGCGCTACAACCGGGAAGGACCGGAGGGCTTGAGGGACAAGCGGCACCAGAACCCGGGCCAGAAGCCCAAGCTGACCCCGGAGGAGCAGAGGAGGGTCCTGGAGGCCCTCCAGGGCCCCCCACCCGACGGGGGCCTGTGGACGGGGCCCAAGCTCAGGGACTGGGTGGAGCGGGAGCTGGGGAAGAAGCTCTCCCTCTACCCCATCTACCGCCTCCTCCACGAGATGGGGTTCGCCTTGCGGGTGCCCCGTCCCCGGCACGCCAAGGCGGACGGGGAGGCGCAGGAGGCGTTTAAAAAAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 4 326326-327310 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR027520.1 Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 326326 36 100.0 37 .................................... TTTCACGGGGTGCGTAGGGGGGTGAGGGCCGCCCAAA 326399 36 100.0 39 .................................... GTGGCGATGGCGGTGGCCAGGCCAAAGTCATCAATGCCG 326474 36 100.0 37 .................................... TTTCACGGGGTGCGTAGGGGGGTGAGGGCCGCCCAAA 326547 36 100.0 39 .................................... GTGGCGATGGCGGTGGCCAGGCCAAAGTCATCAATGCCG 326622 36 100.0 38 .................................... AGAAGCGGCTAGGGGAAATCATCAGGGCAGCGCGGCTT 326696 36 100.0 36 .................................... CGAGGATGGCCGGGTCTACCAGCTTTAGCGTAGAGC 326768 36 100.0 39 .................................... GGGCATGGCCTGGCAAGGCACGACCTGGTGCGGCAGGCC 326843 36 100.0 37 .................................... TGTAGAGGCCACGATTGCGGTGGACCAGGCAAACCTG 326916 36 100.0 36 .................................... CTCCCCGAGGTAGTAGGCCTCCACGCGCTCAATCAC 326988 36 100.0 36 .................................... CGGGAGGGCATGAACGCCGTCCTGGCCTGGCTTCAG 327060 36 100.0 35 .................................... GCCTTTATGGCGGCGCTCTCCATGAGAGCCTGGAC 327131 36 100.0 35 .................................... CACGGCGCGGACCGCCCAGGACACGCGCATCTGCA 327202 36 100.0 36 .................................... CGGAGGGTGCAGGGCGAGGAGGACGGCCACCTCCCC 327274 36 94.4 0 ................................GC.. | C [327308] ========== ====== ====== ====== ==================================== ======================================= ================== 14 36 99.6 37 GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Left flank : GACTCACCCCAGCGGCGTAAAGGGCAATGGCCACCTCCCCCACGTCCACCTGACGGCGGGCATAGGGTTGAAGGAGGCTGGGATAGTATTTCCCTTCCCGATCCCGGGGATGGCCAGCTTCACCTGGCCAAAGGCGGTCTCCAGCTTGCGGGGTAGTAGCCGTTCTTGCGTCCCCCGTGCTGGCGCAAGAAGGCTTCCCGGTCGGCGTCCAGGAGAATCTGCAAGACCTCGGTCACCGTCTGCCTCACCGCTTCCCTTAGCATCACCTGCAAGGTATCCTGGTCCACGGGGTACCTCCTTCCTAATCCTGGTACCCCCCTTTTATACACAAACCCCTACACATAATTCCTTACACGACCCTCGTGCGCGTGCGCACTCGTCCTGGAGAAGGAAAGTCCCACTTTAGTCCCACGGCTTCTCTTCCAGGTTGACGCATAATCCCCCCGCGTGCGAAAATGGCCTCAAGACCCCCCGCCTGGAGCCGCTTCCTGGAGGGGGCC # Right flank : CCCGACCCTGTGGGCCTTCCATATGGATGCGGTCTTTGACGACCGGGATACTGTGCGGTGGGGAGGCCGGGGTGGGTGGCTACCGATCAATCCCGCGAGCGTGAGGGCCCAGCAACCGGTTGTGTCAAGAGTTATGTGTAAGAGTCTGTGTACGGGGGGCATACCGCTCCTGAAGCATCTTCTCCAGCACCTCCTTCACCTCCGAGAACCCCTTTAGTTTCCGTTCTGCCCACCTCCCTGCAAGATGTTCGCTTCGCGAAGCAGCCTGCCTCTCCGACTCCAGGTAAAGAAGCTTGTACACCGCCTCTTCCTTAGGAAACTTGTGGTCCCGCACCTTCGTCCCACGCCGTAGCTCCCGGATAAACCGCTCCATCAGGTTGGTGCTCCGCAGGTACGGCCAAAGCACCTTGGGGTACCCGTAGAACCGCAGGAAGGCCCCCGAATCCTGTACCCAAAGCCCCACCACCCCCGGGTACCGCGAACCCCAGGCGGCCTTCACC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //