Array 1 233781-235910 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032678.1 Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 233781 28 100.0 32 ............................ CTACCGCCGTCATTTTTGACAGCAAATCGATG 233841 28 100.0 32 ............................ GCGAAAAAGCGGCGCTGGAGCAAGCTGCCCAG 233901 28 100.0 32 ............................ AGGGGGGAGCTCGATGCGAGCAATGCGGACGC 233961 28 100.0 32 ............................ AAGGATTCGTAGACGCCCCGTCGCTTCGAAAA 234021 28 100.0 32 ............................ TCGCTGGAAACAGCTCGTAAAGGGCGCCAAGA 234081 28 100.0 32 ............................ CCAGAGCTCAACCTGGAGGCCTGGCGCAAGCT 234141 28 100.0 32 ............................ ATCGCACCGCTGATGGCGCGGGCTTTGAGGTC 234201 28 100.0 32 ............................ CTGGCGGGAGCGCTTTGGCCAAGCCTCGACAG 234261 28 100.0 32 ............................ TCATGGAAATCATCGTTGCCAATGATGGTGTC 234321 28 100.0 32 ............................ CGGCCCCCGCCTCAGCGGGCTCTGGCTGAGCG 234381 28 100.0 32 ............................ ATATCAGCGAAAGCTTCCTGGGCGTTTTTTGA 234441 28 100.0 32 ............................ CATTTGACCGACCGACCTGCTTTGCCGGTCTT 234501 28 100.0 32 ............................ TCATCCACGACCCACTTCACTGATCGCCCCTC 234561 28 100.0 33 ............................ CCGCGAGGAATGGCGGCAGGAGCAAGCGCAGGC 234622 28 100.0 32 ............................ ATGCAGGCTCGATACCTTGAATGTGCTTTTGC 234682 28 100.0 32 ............................ GCGTAGATCATCTTGATCGCATTGCTCAGGCC 234742 28 100.0 32 ............................ ATGAAAGACCCTAACGACCACGCGACCGTCGA 234802 28 100.0 32 ............................ AGTTGGACAGGCAAAATCCCGCCGTAGATAGC 234862 28 100.0 33 ............................ TTTCAGCTCCGCAGCCGTGGTGCGGTTGCCATC 234923 28 100.0 32 ............................ CCTCCGGCAACAAGAGATGGGAGTTGAGGTAC 234983 28 100.0 32 ............................ AGGGTCTCCAGGGGCTCGCCAAACACATAGGT 235043 28 100.0 32 ............................ TCGACCCAGCCCCTTCACTGATTACTCGCTAT 235103 28 100.0 32 ............................ TCTGGCGGGCCTCGTCGTATCTGCCTACCAGT 235163 28 100.0 32 ............................ ATTGCTTCACCAAAGGTTACGAGGCTGCCACA 235223 28 100.0 32 ............................ TCAACAGGCTTGAGGTCGATCAACGGTTCACG 235283 28 100.0 32 ............................ AGAACTGCTCCAGAGCCTGCTGCCTCGCCAAG 235343 28 100.0 32 ............................ TATATCAGGCCATAATCGATAGATCTGAACTG 235403 28 100.0 32 ............................ ATTGCCGAGACCCGCGAAAGCTCGGCTGTAGA 235463 28 100.0 32 ............................ GCACTGGCGGTCACGCTACGCAGCCTGGCAGA 235523 28 100.0 32 ............................ AGGGCGATGTGAATTCTCAAGTCCCTGGAACT 235583 28 100.0 32 ............................ AATCGCTGGATAAAGCGCCGACGTGATGACGA 235643 28 100.0 32 ............................ CATCGCACATTTAACCCCAAAGAAACCATATT 235703 28 100.0 32 ............................ TTGGTGGCCTTGACGGTCAATGGGACGCGGGT 235763 28 100.0 32 ............................ TCAAGCGGCGGTATCGCAAGAAAGGCGCCCCA 235823 28 96.4 32 ...........T................ ATAAATGGCCCATTGATTTATCAAGCCTACGC 235883 28 85.7 0 ...T........CCA............. | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.5 32 CTTCACTGCCGCATGGGCAGCTTAGAAA # Left flank : ACATGGGCATCGTCAAATTCGGCGTTGTAACCCAGGTGCCAGATGATGCCAATGAGGTGCGCTTCTATCGCGACCAGTCACCTGGACGCGTTAAAAAGGGCATCAAGCGTCGGGGAGAGCCGTCGCCAGGCAAGCACTACGATGGCATTGACCGGGAATCGGCAGGCCTGCTGATCCAGCGTACCGATGGTTCAAAGTATCCCATCTTCATCGGTCTGCTACCCGCAACTGAGCGGGTTGATGGTGCTTTCAGTACCTATGGTCTGAGCACGAAGTCTGGCCCGACATTCCCGAATTTTTGATGGCATTGTAGCTTGGTTTCGAAGCCTGTTGCCCAGGCTTTTTATCCGTAGCCCTGAAGGCGACATGGGTAATGCATGTGCTCTTTAAAAATTTCAGCAATACCGAAAATTGGATTTGATGGTATACTTTTCCAAGCCTTTTTGGCTAAAATTGGGTTTGCGCCCTTTGTTTTCAGGGCTTTTGAAATAAATGGCCTA # Right flank : AATGTAAGGAGCGACCGGAAACATAATCAGACCCTTCACTACCGCCTGGGTAGCCCGGATAGTAGATTGCAAGGTCAGTACGCCTGAGAACCTTTATGCCCCCAGGGCAGCCTGAAGAATAACAACACATCACAGGTGACCACCCATGTCAGACAGTTACCACAAGCTCAACCAAGTCATGCCATCCCATAGAAACACCCTGCACTATGTGGAGTATGCCTCTATCCACTCATTCGATGACACGCTGAGTTTTCGGGTTGCTGAGAAAGGAAAATCCAAAGAGATTTCGATACCACATCGCAATATCGCAGGATTGATGCTCGGCCCAGGAACCAGCTTGACGCAAGCTGCGGCACAAAAACTAAGAGAGGCGAACATATGCGCGATGTTTGTCACGGGGGATGGCGGCAACCCCTTGCTTTGGACGGCGCCGGATGAGTACCGCCCCGGTGAATATTGCCGATCATTTCTGAGGATTTACTATGACGCTGATCTTCGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATGGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 720135-720701 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032678.1 Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 720135 28 96.4 32 ...........................G TGGCACACGCTTTCGCTCTACCCCGAGACCAT 720195 28 100.0 32 ............................ TACCAGACGATCAGAAGAGGGGCATTGAAGGT 720255 28 100.0 32 ............................ AGGTCGTTCTCTACTTGCGCCTTCGCAGCTGC 720315 28 100.0 32 ............................ GCCGACGAGGCCCAGCTGTACCACCCAGGTGA 720375 28 100.0 32 ............................ GGTCAGTCACCCCGCAGTTGCAGGATTACTGT 720435 28 100.0 32 ............................ CAGCGCGCCCCGGCTGCCTTCAAGGCATTGGG 720495 28 96.4 32 .........T.................. TTAACGTGGTGCTCACCCTTTGTTCGGGCTAA 720555 28 89.3 32 .C.......T..A............... AAGGCACTGACACGCGAAACCAAATCGCAGCT 720615 28 85.7 32 A.......T.AT................ CGCACACCGGCTTAATCATTGAGACCAAAGCC 720675 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 96.4 32 CTTCACCGCCGCGCAGGCGGCTTAGAAA # Left flank : GCCGTTGCCAGCGATGTTGAGGGTCTTCACGCCCAGCTCATTACAGCGGCGCCACAGCTGCCTGGCCGCCTGAATTGGTGCCATCGAGAGCGGTAAGGCAATGTAACGCTCTTTCCCACGGGCCTCGGCGAGCTTACGCGTCAGTCGCTCGCCACCAGACTCGTAGTCCTCAGCAAAGGCCACCGTCAGATCAGCCGAATTGGCGTTGAGTTCGGTGCGCGGCGGGTATTTGTCGGATTTGTGTTCGCGGACTTGCATAGCAGACTCCTGTTTTAATCAATATAGCAATAAAGATCCGCGTTTTCCAGCTTAGGGTTGTGTTATCATCCCTAGTGCGAACCTTCGACATGGTTGTTCAGCGAAGAAAACCTTGGTAATGAGGTCGTCTCATTTTTTCCTTAAAAATCAGAACGTTACGAATTTGCATTTTGGAAGAGGTCTTGCAAGGGTAATTTCTAGTTAGTCATTGATTTTAAAGGTTTTTTGCCATAAAAACTCTA # Right flank : ATTCCAGCAAGGCTTGCTACCAGGGGTTTCCGCTTTACCATCAATAGTCTTGATATCTGAGGCCCTGCCCAGCCTATAATGGGTAGGTTCAATAATACGCATTTCTCATGAACATCGAAGACGACATTGCCCGCCTGCGCGCCTCAGGCATCTCCCGCACGAAAGCTGCACAAGCCCTCGGCCTGCCAAAGTGGAAACTCGATACGATGTTGGAGCTCCTCGAAATCGAGTGGAAGCCCCGCATTCGGGGTGGCACCTATGTAATCGACGGGGTTACCGACACCCTGGAAGGTCATGCTCAGGCCTTGGGTGTCGCGCCCACCACGCTGCGCCAGCGCCTTCAGGCTGGCAATGACCTCACAGCCCCGCCTGCAAACACACCTATAAGCTCGGAAGAGGCCCATGCCTTCGCTGAATTGCGTAGGGCAGGTGTAGCCGCCTGGGATGCTGCGAAGCAAATTGGGCGGCCCTACAACACACTGAAAAATGCCGCGAAGAAG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCGCGCAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //