Array 1 314017-317035 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJYW01000002.1 Klebsiella quasivariicola strain EuSCAPE_EE019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 314017 29 100.0 32 ............................. CGTTAGTAATCTCCACTGATAACGACACGCCA 314078 29 100.0 32 ............................. CTCTGGCTTCGAGATGCCAGACTTCTTCATCC 314139 29 100.0 32 ............................. GGCACCTGCAGGAATTGCCATACTCTGAACTT 314200 29 100.0 32 ............................. GACTACTTTCTGGCGAAAACGCAGATACTGGG 314261 29 100.0 32 ............................. CACTCTTCCTGATACCGGATCAGCTTGTCGCG 314322 29 100.0 32 ............................. CCCGGTTTCCCGGGCTTACTTTTTGCACTTGT 314383 29 100.0 32 ............................. TTTCCGCGCTTATCGTAGCGGCATTGATTTTG 314444 29 100.0 32 ............................. GACCGAAAAAATGAAAAAACGTGTAACTGTTA 314505 29 100.0 32 ............................. TTGTCAACTTCACGCCAGTAGTCTTTAGAGAT 314566 29 100.0 32 ............................. CAAATATTGCTGTGCATCGCGGGAGACAAAAC 314627 29 100.0 32 ............................. CAGCATTGCTCAAACAGCAGGCAGAGTATAAA 314688 29 100.0 32 ............................. AGTGAACCGTAAAATATATCCTGACCATCACA 314749 29 100.0 32 ............................. GTTGCGGTCTGCTGGCGTCGATACCGGGTGAG 314810 29 100.0 32 ............................. AGTTTTTCAGTTTCATTCGCTGTGGTTTCGAC 314871 29 100.0 32 ............................. TAATCGAAATCGGTGTTTTTTGGTATGACCAT 314932 29 100.0 32 ............................. GCCGAGATGTCAGCCGACTCATGGCCTTATAT 314993 29 100.0 32 ............................. CGCACTCAGCAGATAGTTGGTGAGATTAATGG 315054 29 100.0 32 ............................. GATAATGACTGACAATATCTTACCCGCTACCG 315115 29 100.0 32 ............................. CGTACCGCGCATGACCTGCGCCGCGTGGCAAA 315176 29 100.0 32 ............................. AGCAGCACGAAATACGCATGCGAGCTATGCGT 315237 29 100.0 32 ............................. CCAGTCCTCGCCAGTCTGCGCCGTTTTCAGGG 315298 29 100.0 32 ............................. GCACGCCGTAACGCGCGCTGTGGGTAATGTGA 315359 29 100.0 32 ............................. TCGTGTTATATCGCCCTACCAGTAGCACAAGT 315420 29 100.0 32 ............................. AGGTATTTGATGATTTGTAATCTGCTGCATAT 315481 29 100.0 32 ............................. CGGTTATTCTCCACGTTAGTGAACTGGAGCCA 315542 29 100.0 32 ............................. TTAATGCTTCCGGGGAGGTGGTAGCCAACGTC 315603 29 100.0 32 ............................. CACGGTATATGCGATCGCGATATTTAATCGCG 315664 29 100.0 32 ............................. ATCATCAATTTCGGCCAGAATGGTATCGACGA 315725 29 100.0 32 ............................. CATCACGGGTGAAATGTGCTTACCGATACCAA 315786 29 96.6 32 ........T.................... GATGTTTCTGTCGGGGTCGATCCGGTTAAGGC 315847 29 100.0 33 ............................. GATTTCACTCTGAGCGCCATTCCCCTGGAATGC 315909 29 100.0 32 ............................. CGCAGTAACGAAGTCGCGGGTGTGAAGGTACT 315970 29 100.0 32 ............................. TCCGAAGACCTTCAGAGCGCCGGACAGGAGTT 316031 29 100.0 32 ............................. AGTACGACAAAACAACCAGTGCAGCCAAGGCG 316092 29 100.0 32 ............................. CGCGCCTTATCCGGCCAACATCATCGCTATGG 316153 29 100.0 32 ............................. CGCTGATCGAGGCGCCAGTGTGCGAGCTCCTT 316214 29 100.0 32 ............................. CGCTGGCGGCTGTGGGAGTGCTGACAGGCACC 316275 29 100.0 32 ............................. ACTGATATCACCGAACTGGCGCAGAGCCTGAA 316336 29 100.0 32 ............................. GGGTGAAAGAGAAGTATCTGGAGTGGGCGGAG 316397 29 100.0 32 ............................. TTTTCGCTGAACGCTGCGTATAAACGCACGTA 316458 29 100.0 32 ............................. TCTTTTTTCAGGCACATATCCGGTAAATTAGC 316519 29 100.0 32 ............................. CCAGTTTATTGCTATCTCCAGCCATTAAAAAT 316580 29 100.0 32 ............................. TGGGGGTAACTGGTGTCAGGCTGGGGGCGCGG 316641 29 100.0 32 ............................. TATATATGGGCATGAAATAGTTGCAGGAAATA 316702 29 100.0 32 ............................. GTCAGGCGTGAGTAAAGGATTTTCCTCGCCTC 316763 29 96.6 32 ................T............ TGGAAAGACATTAAGAGAGGGGGAATTAAAGA 316824 29 100.0 32 ............................. CGCCTGGGGGGATCGCGGTGAGTGATTCATTT 316885 29 100.0 32 ............................. GAGGGCGCGGAGGGTAACGTCTACGTGCTGCG 316946 29 100.0 32 ............................. GCGGTTGCCCTGATGGTATGGCGGCTGTGTAG 317007 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGTTGTCGGCAGGCGAAATCGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATCCCTGAGCCTGAATCAATGGGGGATAGCGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTCCCTCCTCGTCTGCGGGGGCGGCTCGCCATCTGGCTGCTGGAGGTTCGAGCGGGAGTCTACGTTGGCGATACCTCAAAGCGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGTGAATCAGGTTTCGAGTTCCAAACTTGGGGTGAGAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTTCTTCCCATTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGGAATAAAGTTGGTGGATTGTTGTCGCCTCAAAAAGGCATTAAAAAACAGTAATATATGTTTAGT # Right flank : GGGGTTCACTTGGGTGAAACTGAACCAACTGTGCCCGCATTCGCTGGGATAAGCCCGTCACTAATGTTATCGATCCTGAGGGTGGGTACGAAAGCTTGCGGAAAATAAGTGTTGCTACCTGCCGCTCTTTAGCAGAATGCCCCCTTAATTAGCCGATATCACTGCTTTTTCACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGTATGGGGCGCCGTATTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGTCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATCATCTTCAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 380186-380822 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJYW01000001.1 Klebsiella quasivariicola strain EuSCAPE_EE019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 380186 28 100.0 33 ............................ TGGGTTTTCGTTCGAGTTTAGCGCCTGCAGGCG 380247 28 100.0 33 ............................ CCAGTCGCCAGGAACAAACTGTTCAACGGTTAC 380308 28 100.0 34 ............................ TTATTATCTGCCGGTCGAATCCTCATATTTAGAG 380370 28 100.0 33 ............................ TACATCTGGCGCGAGAATAAGAAAGGCAACCCC 380431 28 100.0 33 ............................ TTGCTCTTGCCACAGCCGCGCCACGTTTATTTT 380492 28 100.0 33 ............................ CGGCCGGCCCTCTATGATCCATATTTTTGAACC 380553 28 100.0 33 ............................ TCGAATGGGAAAACCTGTTCGCTTTTTTATCAG 380614 28 100.0 33 ............................ TGGGATTCAGCCTGGGTTCTCTCTTGATGTGAG 380675 28 96.4 33 ..........T................. TCATGTAACTTTCAGTGCGCACCTTCTTTCATG 380736 27 92.9 33 .............A...-.......... TCTCGTGATGGTCTATGACGTCGCCGTCGGTGG 380796 27 82.1 0 ............C.T..-....C.A... | ========== ====== ====== ====== ============================ ================================== ================== 11 28 97.4 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTCAGCGTCGGCCAACCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTGGACGGCGCAGCGCAGGATAACAGTCTCCAGCTCCCGCTGCTGACCAGCATGTATCTTGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGTGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTGCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCCGGGAATGACAAAAGTGTTTTGCGCCTGGCTGCGGCCCGGGGAGGCGAGTAGGGTAGACCGGTCCTGGTCAGCAGCAAGTCAACGGTGGTGAGATGGGGACTTACTTTTTCGTTTGATGAATGTGATGCTGATGCGGAACCCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CAACAAAGCTGGTCAACCGTTGTTATCGTTATCTTGGTTTAGTTTGGCAAACACAGTTTAATATATTTTTCATGTGAATTTAAAATTCATATTCATGTGTTATATTTATTTTTTATTTCGCAATGGTTGTTAAGTCCATTTTTCTGGCGCACCTGAAGTATGATTATTCATACTACTTATTTATAATGTCTGATATTGTCGATTTGATGTCTCACATTAAGCGCAGCGTTTGTGAGTGCTTTTTATTTTATAAAAAATTATTTATAAAGCTTCCTGACTTTAGTATTAATAAAACGCACATGTTTTATTAAGGATGATTTTCATGAGGCGCTTAACCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGCCCGGCGAAAACCCGGATGTTGAGTGATGGTCGCGTGGTGCAGGGACGCTCGGTATTGAGTCATTGTCAGATTGTCGGGGAGATTGCCCGGGCGCTTATAGCGCTGTATC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //