Array 1 2357042-2358168 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHSS01000001.1 Salmonella enterica subsp. enterica serovar Fresno str. ST224 Fresno_mirahybrid_c1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2357042 29 96.6 32 ..A.......................... GCCACTCAAATAACTGTCTCTGATATCTCAAT 2357103 29 100.0 32 ............................. GCACTTTTACAGGGGATTTTGTGTCGGTAGAT 2357164 29 100.0 32 ............................. ATTCCGCATACTTTCCGGCGTCCATTCCCATG 2357225 29 100.0 32 ............................. CGGCTGTAATAAAGCCGCCCCGAGTCGCACCC 2357286 29 100.0 32 ............................. GTATTTATATGAATAAATTGCTTTTTGTGGCC 2357347 29 100.0 32 ............................. ACATGATCCATGTTCGCGCATTAGGGAGCGAC 2357408 29 100.0 32 ............................. GATACGCTCATCAAATCCAATCCGCATAGACG 2357469 29 100.0 32 ............................. TGATTGTCAAAAATCAGCATGTTCCCCTGGAG 2357530 29 100.0 32 ............................. CCGACGGGGTGCATTTCTCAATACCGGTGACA 2357591 29 100.0 33 ............................. AGCAACATCGACAAACAGGCGCTGCTCGTCAGC 2357653 29 100.0 32 ............................. GTACGGATGTCCCTCGAAGCATAGGGGCCGCA 2357714 29 100.0 32 ............................. TCATTAACGCGGACGCCGACGAAATCAACGTT 2357775 29 100.0 32 ............................. AGAATAATTTTTTCAAAAAACTCACTTTTCTG 2357836 29 100.0 32 ............................. AAAACACTCCAAAATAAGGCGTTGGCCATAAA 2357897 29 100.0 32 ............................. CATATGCGTCAGCAGAAAATTCGGTGGCTATT 2357958 29 96.6 32 .............C............... CCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 2358019 29 96.6 32 .............C............... GCGCGGCATAACAGCACGGGCACGCCGCCAGG 2358080 29 96.6 32 .............C............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 2358141 28 86.2 0 ............TC.........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.6 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGATGGCCTGCCGATGCCGTCTGTGAATCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGATGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGGGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2374460-2375343 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHSS01000001.1 Salmonella enterica subsp. enterica serovar Fresno str. ST224 Fresno_mirahybrid_c1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2374460 29 100.0 32 ............................. GGGACGGGAGTCACACCGCGTTGATGGGGGGG 2374521 29 100.0 32 ............................. GTCAAGCGCCACCCGCAAGGGAGAAGAGGGGC 2374582 29 100.0 32 ............................. TTTATCTTGATGGGCTTCGCGTGCCGCACGTA 2374643 29 100.0 32 ............................. AAAAGTTCTGCGGGATTGCACTCATCGCCATC 2374704 29 100.0 32 ............................. AGCCGCCGTGTGTTTTTAATTCAGTCGTCATA 2374765 29 100.0 32 ............................. CACACCGCGCAGTCTTGGCGAACGCGCCGACC 2374826 29 100.0 32 ............................. TTTTATCGCCGTAGCTTATTGCTAACTTGGCG 2374887 29 100.0 32 ............................. CGCTGTTGTGCAAGGGGTTTAGCTCGGTTTGC 2374948 29 100.0 32 ............................. ATTTCAATGGCCTTTTTGATTTTGCTTATTTC 2375009 29 100.0 32 ............................. GCGGCGTAACGTGGCGACGACCGGCGATAGAT 2375070 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 2375131 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 2375192 29 100.0 32 ............................. GTGATTCGCCAGTTCGCCCGAACGGTGATCGC 2375253 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2375314 29 93.1 0 A...........T................ | A [2375340] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAGGTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGGCTGCGTTTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAGTGCTCTTTAAAAAGATAAATTTGTTGCTTATAAGTTGGTAGATTGTTTTTGTGTGATAATTCATTGATGTGTAAGTATATTTTTTTA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAACGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAACAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //