Array 1 65642-63975 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEWM01000015.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 148_16 NODE_15_length_136565_cov_11.0705_ID_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 65641 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 65580 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 65519 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 65458 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 65391 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 65330 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 65269 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 65208 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 65147 29 100.0 33 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACGT 65085 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 65024 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64963 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64902 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64841 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64780 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 64719 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64658 29 100.0 33 ............................. GTCGTTCATCAGGCACTACCGGCACTTTTCTGG 64596 29 96.6 32 ....C........................ ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64535 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC G [64511] 64431 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 64370 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 64309 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 64248 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 64187 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 64126 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 64065 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64004 29 96.6 0 A............................ | A [63977] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.4 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83025-81899 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEWM01000015.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 148_16 NODE_15_length_136565_cov_11.0705_ID_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83024 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 82963 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 82902 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 82841 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 82780 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 82719 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 82658 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 82597 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 82536 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 82475 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 82414 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 82353 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 82292 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 82231 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 82170 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 82109 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 82048 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 81987 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 81926 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //