Array 1 103921-105290 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWRH01000015.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_80 contig0014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 103921 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 103982 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 104043 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 104104 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 104165 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 104226 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 104287 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 104348 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 104409 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 104470 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 104531 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 104592 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 104653 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 104714 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 104775 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 104836 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 104897 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 104958 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 105019 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 105080 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 105141 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 105202 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 105263 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121914-124445 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWRH01000015.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_80 contig0014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 121914 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 121975 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 122036 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 122097 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 122158 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 122219 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 122280 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 122341 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 122402 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 122463 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 122524 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 122585 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 122646 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 122707 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 122768 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 122829 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 122890 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 122951 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 123012 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 123073 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 123134 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 123195 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 123256 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 123317 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 123378 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 123439 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 123500 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 123561 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 123622 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 123683 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 123744 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 123805 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 123866 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 123927 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 123988 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 124049 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 124110 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 124171 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 124232 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 124293 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 124355 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 124416 29 96.6 0 ............T................ | A [124443] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //