Array 1 1896-221 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPOG01000010.1 Salmonella enterica strain CFSAN060810 CFSAN060810_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1895 29 100.0 32 ............................. CTAACCCGCCATTACGGCGGGTTTCTTACAGG 1834 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 1773 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 1712 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 1651 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 1590 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 1529 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 1468 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 1407 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 1346 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 1285 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 1224 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 1163 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 1102 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 1041 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 980 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 919 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 858 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 797 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 736 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 675 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 614 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 553 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 492 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 431 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 370 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 309 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 248 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCAGGTCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16595-20103 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPOG01000008.1 Salmonella enterica strain CFSAN060810 CFSAN060810_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16595 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 16656 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 16717 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 16778 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 16839 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 16900 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 16961 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 17022 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 17083 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 17144 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 17205 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 17266 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 17328 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 17389 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 17450 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 17511 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 17572 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 17633 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 17694 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 17755 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 17817 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 17878 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 17939 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 18000 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 18061 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 18122 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 18183 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 18244 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 18305 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 18366 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 18427 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 18489 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 18550 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 18611 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 18672 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 18733 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 18794 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 18855 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 18916 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 18977 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 19038 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 19099 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 19160 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 19221 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 19283 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 19344 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 19405 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 19466 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 19527 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 19588 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 19649 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 19710 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 19771 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 19832 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 19893 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 19954 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 20015 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 20076 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 58 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //