Array 1 171-331 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRGH010000025.1 Prevotella copri strain HDE04 HDE04_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 171 30 100.0 36 .............................. TACAACATGACTTCTCAATATGTCTGCTATCTATAT 237 30 100.0 35 .............................. TACAACAGCCTTTTTGCGCTCCTTCTCCTCGTCCA 302 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GTTGTGGTTTGATGTAGGAATCAAAAGATA # Left flank : GGCTATTCCTTACGGACAAGACTCCTTTAAATGATTTGTTTAACAAAGCTGTTCCAACAGAAGAGACGGAGGATTGGCTATATCCTAGCCTTTTCAGCCCCGACGATTTCTAAACGGGACAGCAGTGAAAAGATATACAACATTCAAGAAGCCGAAGCAGCAGGAAGCCAG # Right flank : ATACAACATAGTAATCTGGTGCACCTGCCTTAACCTGTATTTAGGCATAGATGTTAGTAGGTAGGGTGTCCAGTTCTATGTTCCAATATTAACTCACTTGTTTGAGAGTTTTGGTTCGTTTATAGTAAAATGATTGATCTGGTCGCAAATTGCGACAGGTTTAATAGCTTGAAGCTCTTTATGGCTCGTTCATATACATACACAGAACTTATATACAACAACTCATCGCCCACCAGCTGATTTCCGCTTGCACAACAGATGCTGGACGAGCGCATATCAGCTGTTATGCAAGCGCACAACAGCTGTTGTGCGGCTGAAGATATAGGCTTCTCCGGCTTATAATATTAATTCTTCCGGCAACAAGTAAAGGTTACTCCGAAGACTTTTTACGTAAAACCGATGCAACAATGATAGTATTTACAAGCAACAATGATAGTACTTGCAAGCAACAGCGATAGTACTTACACGGTGCAAAGACGTTACTGAGAGGTCGCCATGAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTAGGAATCAAAAGATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATGTAGGAATCAAAAGATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 5579-6490 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRGH010000065.1 Prevotella copri strain HDE04 HDE04_65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 5579 37 100.0 35 ..................................... TCTACGTTAAAGAGTTAATAATCTAATTTAATTTA 5651 37 100.0 36 ..................................... CAACTGAACTGCGCTCATAGCACTGTGCTTTACAGT 5724 37 100.0 35 ..................................... TTTCTCAGCTTCTACTTTAACAGCAAACTTGTGTG 5796 37 100.0 34 ..................................... ATTGAGCTGGACGTTGTCGCCCAGTGTCATTACA 5867 37 97.3 38 .........C........................... CTCACCCCAAGGTTCATCAGCATACTCAGGTAAAATAA 5942 37 97.3 34 .........C........................... TTTGATCTATTCTGAAAACATGAAGATGCTTCTT 6013 37 97.3 37 .........C........................... TCGTTGTTTGTACCTTTCATAATTGTAAATGTTTTAA 6087 37 94.6 36 A........C........................... AGGTGTTCAAAAGACCAAGCCTTAGCTGTTGCCCTC 6160 37 91.9 37 .........C...T..........T............ AGACTATTGAAGAATGAAGTAAACTGACGCTGACGGT 6234 37 89.2 38 .........C...T....T.....T............ AGCTTGATTGCAGGGTACTTTGCAATGACTTTGTTAGT 6309 37 91.9 37 .........C...T..........T............ GCCTGAAGCACTGACATATTAAATAAACGATACTTAG 6383 37 91.9 34 .........CG.............T............ TCTCATCAGCGTCAATGCACACACTGAATGAATG 6454 37 83.8 0 .........C...T....T.....T.........A.A | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 95.0 36 GTACGAGACTATCGTCCACTACAACAAGGATTAAGAC # Left flank : TAAGAATACTGATGGTCTGGAGACTACTAATGAGTTCGTTGCGAAAATCCTGGCAGATGATAGTGTTTGGGGGAACAAGGAATTTGTGACTATCTTGCAGCAGGTGGTTGAATTACGCAATGATTACAACCATGCAGGATTCAAAGACAATCCTTTTTCTGCTCAGACGATCATTGGTAGGGTAGAGCAACTACTGGATGGAATTGAGGATGTCTTGTCTGAGATATAGGATTTGGTAGCATCATTTTAAATGGTTTTAGGGGCTGTTTAAAGTGGTGCTTTTGTTTTGTGGAGTATTGGGATGGTTGATGTTTGTGAAGAGGTGTTAATACCAAGAGCATATTTACTTAAATATTTAAGAATAATTGGCTTGCATATCTCGAAAAATAGTCGTACCTTTGCACTCGCTAATAAAAAGTTAATTTTCGGTTAAGAAAAGTGAAGAATTGTTTAGCTTATTCTTTAACTTATTGATAATCAGCATAGTCTTATAAGGTCGA # Right flank : ATGTACATAAACATTTAGTGATCAATTAGTTGTTTCCATTTCTTTTGTGAAATGCTTTTCCAAAGTCTTCTCTGTGATTACGTTGGGAAGCGTTGTTTAGGATTTCAATTTAGTTTTTGGTTTAGATAGCATCGTATTGTCCTGAAAGTGTAAAAAGTCAAAAAAATGAGCTAAAAGTTTGGTGGTTACTCTCGTTTTTTATACTTTTGTGGTGACTTTGATATTGGAATGAAAAAAAGAATGGCTTTCCTCTTTCAAGATGAATAGTTATAATTGATGTCTTACTATACTTAATAAGGTATAAGGTCTGGATTTTCGGTACATAGTTCTTAGGATGGAGGTTCTTGTCAAAAAGGGATCTTTTCGAAAAAATAACTTTTAAATTGATGTATAATGAGTCAAGAAGAAGTAGATGCAGCTAACAGGCTGATAATAGATTCTATCACTAAATACAAAGTCATCATCGCAGGATGCCGAGACTTTACAGACTATGAACTGCT # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGAGACTATCGTCCACTACAACAAGGATTAAGAC # Alternate repeat : GTACGAGACCATCGTCCACTACAACAAGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 15271-17066 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRGH010000047.1 Prevotella copri strain HDE04 HDE04_47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 15271 37 94.6 37 ............TG....................... AGTATTCTCATCAGCTTTACGCTTTGGAAAATACTGA 15345 37 94.6 38 ............TG....................... CCTAATTTCTTGAGTTCGACGTTCACTTTGTCAAATAC 15420 37 94.6 35 ............TG....................... ACGTGACATCTGACGTGTCGTGAGCTCTACGCTGT 15492 37 94.6 37 ............TG....................... CACCCTCTTGACGGGTGAGGCGTTTTTCGTCCCATGC 15566 37 94.6 37 ............TG....................... GCAGTGAGTATCTGCGATGGTTGAGCTGGTTGACCTG 15640 37 100.0 35 ..................................... TATCCTCTAAGTGACTTACGAGTAGTATTCCAAGC 15712 37 100.0 37 ..................................... TCTAGACTTTTCGTCTTTAAATTTAATTGAAATATAA 15786 37 100.0 34 ..................................... AGCAGGTATAAGTCTTACCAACAGAAGCACCAGC 15857 37 100.0 37 ..................................... TTTACGTTACCACTCTATTCATTAAAAAATTCATAGT 15931 37 100.0 36 ..................................... TTGAAATGGTATTTATAGTAAATTTTACCAAGTTCC 16004 37 100.0 35 ..................................... TAGTACTGTTCATACGCTTCAATCTTTTTCTCTGC 16076 37 100.0 37 ..................................... AATTGTTTACAAGTTTAAATACCGCAGTGTCAATAGA 16150 37 100.0 36 ..................................... ATGCTGAATCAAATGATTACCAGCAAATGCTACATC 16223 37 100.0 38 ..................................... TTGGTAATTGCCATCGCATTGCGAAGGTTCATATTTGT 16298 37 97.3 37 .....................T............... AACTCGTTGGTAACACCTTCAACAAACTCACCAGTCT 16372 37 97.3 35 ........................C............ AACTCTGTTGCACTTGCTTTAAAATCTTTCATACT 16444 37 100.0 40 ..................................... CCTTGCATCCAAGCTTCTATCGTGATGTCAGCAGATGCAG 16521 37 100.0 35 ..................................... ATCTGCGAAGCTGACATAGCACTGTGGTTAACAGT 16593 37 100.0 36 ..................................... ACGGCTTTGTCGTATGCTTCAGCACACTCTTTGCAA 16666 37 100.0 35 ..................................... GTAAAACGAACACTAACACTACCATTGTTGGTAAA 16738 37 97.3 35 ........................C............ AAAGCATTTGCCGCTTGTGCAGATGACTTCTGTAC 16810 37 91.9 36 ....T.....T.............C............ TCCTCTTGGAACGTACCTTCCCACTTGTAACCTGCC 16883 37 97.3 36 ..................T.................. TTATAAACAGAAGCGTAAAAATTAGAAAAATCTTTT 16956 37 94.6 37 .............G..........C............ CGATTGGTGATTGTCATCGCATTGCGCAAGCTCATAT 17030 37 83.8 0 ..T..........................GA...TCT | ========== ====== ====== ====== ===================================== ======================================== ================== 25 37 97.3 36 GTACGAGACCATCTTCCACTACAATAAGGATTAAGAC # Left flank : TCTCTGAATAGTTCCAGCTGTCAATCTTTCCGTAGCGTACTAAGGATGATTCCCAGCTAGTTAAAATGTTCTTAATCTCAATTTCCATTACTCTCATAATTTTAATGTGCTCCTAACTTTAACCATAGGTGCTTTGGTTTTCTGGGTGCAAAGGTAAGAGTATATAGTGAAATGATATTTCACTGGCTCATTTTTCTTGTTTTTTGTCTTTTTGGCATACTTTCTCTACCTTTTTATATCCATGAATCATGCATTTTCCTTCATTTTACCCTGTTTATTGTTGAATTCGCTTCTATTGCGATGGATGCAGATAGTTAATAGAGTTAAATTTTTTGGTTGGAAATGGCTAAATATTTAAGAATAATTGGCTTGCATATCTCGAAAAATAGTCGTACCTTTGCACTCGCTAAGAAAAAGTTAATTTTCGGTTAAGGAAAGTGAATATTTGTTTAGTAAAGCTCTTTAACTTATTGACAATCAATAATGTCTTATAAGGTCGA # Right flank : TCTGTTTGATAGTACCTATGTATTTTATTATTGATGGTGTATTTCTGTTAAATGCATTGATCAATTGTTATAAACCAAAAACGTTGGATAGAGGAGCATAGACGTTCTCATTTTTACCGCCAATGTTTTGTATGGTAGTTGGATATTGGTCGGAATTGGGCTGACTGAGAAGTGCCAACTGCATTTAAGAAAGGTTGCTCCCGAGTATGTACGACTAAATGTAGGATATATTTCATAGTGACAAACGAGTACTAACCTTGTTGCTTATATATCAGCCTTTCTTCCTTTGGTTTGGGAAAGAGTTGAGTTACTTCTCAACTAACTAGGTGTTGTGTTCATACTCTTACATCTGGCCAAAGGTTCTTTATTTTTCACTTGGTTGTGGTTTTAAATGGATATGGAGTGGGTTGATTAAGTGGGATTTTTTTGATATGTTTGCTTTTGAGCAGTCCATTCTTTAGGGTACACCTAAATGGGGCATACCCTAAGAATAGACCTTT # Questionable array : NO Score: 2.94 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGAGACCATCTTCCACTACAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 26827-28749 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRGH010000047.1 Prevotella copri strain HDE04 HDE04_47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 26827 37 100.0 37 ..................................... TTTTCTTTAAATCTAACATAATTTTCTAATTTTAAAG 26901 37 100.0 35 ..................................... TAGTATCATCATTTACATCGTCTATAGCTATAAAA 26973 37 100.0 37 ..................................... CGCTTAGTTCCATCAGGCGCCTGCACTTCAATGACCA 27047 37 100.0 35 ..................................... GGTTAGGCGCTTTTCGTCCCATGCAGGTAAGTCAA 27119 37 100.0 37 ..................................... TTGTTGGTAAACATTGCAACACTCTTGATTTTAACTG 27193 37 100.0 38 ..................................... CGTTAATAACAAACTAGTTCACGACTAGTTAGCCGAAG 27268 37 100.0 33 ..................................... TCACTATTTGCTTCGTTGATGAAGTGCATAAAC 27338 37 100.0 37 ..................................... ACAGCGTGTACAAGAATATGCCCTCAGACACATTTTA 27412 37 100.0 33 ..................................... TAAACAGTCTTTGTCTTCATAATTGTAATGTTT 27482 37 100.0 37 ..................................... TTCTTTTCCTTCCGGCATTTTAAAATCCTTCATAATT 27556 37 100.0 34 ..................................... AAGTTTGCCTGCTCTGTCTGCCAGAAGGTAGACT 27627 37 100.0 31 ..................................... CTGTCACTGCTGTATCAGCAGTGAATGTGAA 27695 37 97.3 37 ..................T.................. TCAATATCGGCAGCCCCTGGTGCCAACATTGCCAGCA 27769 37 100.0 34 ..................................... CCTCAATGAAAGGCTTTTTAGCGTTGCACTGAAC 27840 37 100.0 34 ..................................... TCCAAAGTAAGACCATTATTACGACGTGTGAGCT 27911 37 100.0 39 ..................................... TTTTGTCTAATTTACGTTTATAACCAAAAACAGTAACTG 27987 37 100.0 36 ..................................... ACAATTTGCGTTATTTTTGATTTTGTTGTTAAATTT 28060 37 97.3 35 ..................T.................. AATTCTACTGTGTTCTTTGTACCTTTCATAATTGT 28132 37 97.3 37 .............G....................... CAAACGTTCTCTCTCATTACTCGGTGAGCGCCCTTTG 28206 37 91.9 37 .........A...G....................A.. ACAGCATTTACTGGAATAATGATATGATTACCACTAA 28280 37 100.0 34 ..................................... AAGTTTGCCTGCTCTGTCTGCCAGAAGGTAGACT 28351 37 100.0 31 ..................................... CTGTCACTGCTGTATCAGCAGTGAATGTGAA 28419 37 97.3 37 ..................T.................. TCAATATCGGCAGCCCCTGGTGCCAACATTGCCAGCA 28493 37 100.0 36 ..................................... CATACGTTCACTCTCATAACGCGATGCGCTCCCTTT 28566 37 100.0 35 ..................................... AGATTATACCAGTCAATTACAACGTTCTTCATCAC 28638 37 100.0 38 ..................................... CCAGTGCTAATATGAAAACCTCTCTCTGCCATCAGTTG 28713 37 97.3 0 ..................................T.. | ========== ====== ====== ====== ===================================== ======================================= ================== 27 37 99.2 36 GTACGAGACCATCTTCCACTACAACAAGGATTAAGAC # Left flank : GTTTAGCACCATATGAATTTAATACGATTTCCATAGGCTCATGGTTTTAAATTTCTGAGTGCAAAGGTAGGGAGGGATTTTGAAATTATATTTCACTGGCTCAATTTTCTAGATTTTGATAGTTGGGTATGATTTCTATACCTTAATTATATATAGGGCATTTCTTCTTCTCTTCTTTAGAATCTAAAATATATAGTTATTGGGGTGATAGTTGAGATGCAGAATTTCTATCATTTTAAATATTTGTTAGTGCTGAACCATGTTTTTTGGGGGTGGTTTGTCGTTTACCTTTGGGGTTCTGTTTCCCGTTTTAGTTAACAGAGTTAAATTTTTTGGCTGAAAATGGCTAAATATTTAAGAATAATTGGCTTGCATATCTCGAAAAATAGTCGTACCTTTGCACTCGCTAAGAAAAAGTTAATTTTCAGTTAAGAAAAGTGAAGAATTGTTTAGTAGAGTTCTTTAACTTATTGATAATCAGAATAGTCTTATAAGGTCGA # Right flank : CAACACATCACCCTTCTTCCAAGCGAACTTAGACCAGTACGCGACCATCGTCGATTACTAAGGATTATGATTATTTGTTTGTGAGTTGTTCATAGATTATTTTGTTTCATAGGTAGGGTTAATCGTTGCATGAAAAAATCCCATATCAAGGTTGGTTGCCTTGGTATGGGATTGATTTTACTATTCTGATATTCTTATCTTCTGGTTAGTCCTATTTGGATCACTCCTGTCTTATTTCATTAAGCAGAAGCTTCTTTTTCTTACTTCTGGTAGGAATCATAAAGTTCCTTAGCCTTTTCTTCACCTAGGAAACCAGTCAGCTTTCTCCAGATTCCACTCTTGTCAAATGGCTTGGCAAGTTCCTTCACTTCCTTCTTGGATGGTTCCTGTAGCAAGCGCATTGAGGTATTGAAGAGGTCGTTCCTGTCGGATTCTTTGAGCTGTGATGTCTTGGAGTCTTTCAGCCATTTTTCCACCTTCTGGAAGCATACCTTGAAGTC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGAGACCATCTTCCACTACAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 2255-5881 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRGH010000098.1 Prevotella copri strain HDE04 HDE04_98, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2255 30 100.0 36 .............................. TACAACAAAACGTTTCTTTGCCTTATCCAGCTGGGC 2321 30 100.0 36 .............................. TACAACTGATATATGTGTGTACAAACTGAAATGATA 2387 30 100.0 35 .............................. TACAACCAAGCATTTTCAGCGATATTTTTGTGCTG 2452 30 100.0 35 .............................. TACAACCACCATAAAAGCGGACGGCGACGCCGACA 2517 30 100.0 35 .............................. TACAACTGTTTACATATCACAACAAATAGAGATTA 2582 30 100.0 35 .............................. TACAACCAACGTGCTTAAAGGTATCATCAATACTT 2647 30 100.0 36 .............................. TACAACAGCTGGTGTATATGGTAGAGCTGATAACCA 2713 30 100.0 35 .............................. TACAACAGAATGAAGAAGAAGAGAATAACACTATA 2778 30 100.0 36 .............................. TACAACCCGAGGTTTTAACCCTTTTGAATGCTGCTA 2844 30 100.0 36 .............................. TACAACAATCCGAATGCAAACAAGCCAAACACTGGA 2910 30 100.0 36 .............................. TACAACCCTGAATCTCCTTATAACGCTGCAAGGCTG 2976 30 100.0 36 .............................. TACAACTCTGCATAGCAAGATAAGGATTTAAACCAG 3042 30 100.0 35 .............................. TACAACGCAAAAGGTTTGTTTGCTGATGTGGTTGA 3107 30 100.0 36 .............................. TACAACCTTCATAGCTTACTGGAACGGAGCATATAG 3173 30 100.0 36 .............................. TACAACTTTGCACCTCAACGACGGCTACGCGCGCGG 3239 30 100.0 35 .............................. TACAACAGAACAAATTCCGATTGCTATGGCCGAAG 3304 30 100.0 35 .............................. TACAACAGAACAAATTCCGATTGCTATGGCCGAAG 3369 30 100.0 35 .............................. TACAACAGAATCGCAGTTGGTACGGCAGCACCAAA 3434 30 100.0 36 .............................. TACAACAACGGCTACGACATCAAGAAGCCGGTTGCA 3500 30 100.0 35 .............................. TACAACTTACACGATATATTCCATACACATCCTTA 3565 30 100.0 35 .............................. TACAACCTATCAAACAAATTTTCATTAACATTTAA 3630 30 100.0 36 .............................. TACAACCCAGCAACACGAACAGAGTTAGGGCAGTGT 3696 30 100.0 35 .............................. TACAACTTGTAAGATAAATATAATCAAATGTGTTG 3761 30 100.0 36 .............................. TACAACAGGCGCTCACGATAAAAACAAAAAAACAAT 3827 30 100.0 35 .............................. TACAACTGAAGATTATATTGGTGTAACGTATTTCG 3892 30 100.0 36 .............................. TACAACTAACAGCAAATGATCCAGATTGTGCTGATT 3958 30 100.0 35 .............................. TACAACCGTTGGCGGTTCTTCCGGAAATCGGGGAA 4023 30 100.0 35 .............................. TACAACATAGTTTTGGTGGGTCAGCCACCCGACAA 4088 30 100.0 36 .............................. TACAACATGCCCAGCGTATGATTGTGAACGATGCGA 4154 30 100.0 35 .............................. TACAACGTGCAGATGCCTACCAAGGACGGAATGCA 4219 30 100.0 35 .............................. TACAACAGCGAGGGAAACATCGTATACAAGTACAA 4284 30 100.0 35 .............................. TACAACTGACTCTCTTCGGGATTCTTACTCACCCA 4349 30 96.7 35 .......C...................... TACAACATCTAGTGGGTGCACCTGGCATCTAGTGG 4414 30 100.0 35 .............................. TACAACCTTATTATATATAGGGAAAAAATAAAACG 4479 30 100.0 35 .............................. TACAACCCACTGCATATAACGATAAAAATCGTTAG 4544 30 100.0 35 .............................. TACAACTCCTTATAGTCCTGGAAGAAGTTCTCTGT 4609 30 96.7 35 .................A............ TACAACGAAGTTTATGGTAAGATGCACCACCACCG 4674 30 100.0 35 .............................. TACAACGCCTTCAAGCGGTCGAGGGCATCAAAGAA 4739 30 100.0 35 .............................. TACAACATAGAGCAGGAGAACACTCCCAGAGATAA 4804 30 100.0 35 .............................. TACAACGGAAGAAATCATATCGCCTATGCCATAGA 4869 30 100.0 36 .............................. TACAACACACCGTAGCCAAGTTGCAGCAGCAGGTAG 4935 30 100.0 35 .............................. TACAACACAGATGAAACTATCTCCCTCATGCAGGA 5000 30 100.0 35 .............................. TACAACGCTCCCTTGTCGGTGAAGGCAACATTGCC 5065 30 100.0 36 .............................. TACAACAATGGCGACTTATGACAATTCCTGCAGAAT 5131 30 100.0 35 .............................. TACAACCGTTCTGGATAAGGCAAAAGCCGACCTGG 5196 30 100.0 36 .............................. TACAACTACTTTCTGCCTCTGCCACATGGTCTATAA 5262 30 100.0 36 .............................. TACAACGAGCTTCTGAAAGAGTGCGGAGTGAATTAC 5328 30 100.0 35 .............................. TACAACCAGTACTACGAGACCATCATCGAGCGGCT 5393 30 100.0 36 .............................. TACAACATGCTGCCGCCAAACGAGCCGATGCCAAGA 5459 30 96.7 36 ...................A.......... TACAACCATTCTTTGTGAGATAGTTGTTCCACTTGA 5525 30 96.7 35 ...................A.......... TACAACGCTAACATATATAAATGTTTTGCGTACAC 5590 30 100.0 35 .............................. TACAACTATTCTTGCCATATTCACGAGGCTTGATA 5655 30 100.0 36 .............................. TACAACATGCTGCCGCCAAACGAGCCGATGCCAAGA 5721 30 96.7 36 ...................A.......... TACAACGTGAAATGGTGCGTGGGTTCTTAACTCGTG 5787 30 96.7 35 ...................A.......... TACAACGCGCATCATCATCGTATATCGCAGCGAGG 5852 30 96.7 0 ...................A.......... | ========== ====== ====== ====== ============================== ==================================== ================== 56 30 99.6 35 GTTGTGGTTTGATGTAGGATTCAAAAGATA # Left flank : ATACTATTCAGGAGAAATCAAGAAACTTTCTTTACCTATTATAACATGACAGAAGATAGACTTAATGCGTATCATATAATGTGGCTATTTGTATTTTTCGATTTACCTGTTACTACGAAAAAAGAAATGAAGGCAGCTTCTCTCTTTCGTAAGAACTTGGAGAAAGATGGTTTCTCCATGATGCAATTTTCTGTCTATATCCGTCATTGTGCATCAAGGGAAAGTTTGGAAGTGCATATAAAACGGGTAAAATCTTTGCTTCCGGAGATAGGAAAAGTTAGTTTATTAAGTGTTACTGATAAGCAATATGGAGATATTTATAACTTCTGGGGTAAACCCAAAAGTATTAATAAGAGTAAAATATCGAAAAAAGTTATCAGTGAACCTATTCAATTGGAGTTTTTTTAGTACTTTTGCATAGAAAATTATATCCTACTCATCATTTCTTATTAGAAAAAGTGATTGTTATGTGCTGGAAATCAGTACTTTCAAATCTATAG # Right flank : TCACTAGTGTCCCGTTAAAACGAGACGATTATTAAATAAGTTATTAATACTCAAAAGTTTACGGACTTTTTGTAGTGTATTCGATTTGATTTTGTATCTTTGCACGCATATTTAAAATACGTGTGCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTAGGATTCAAAAGATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATGTAGGAATCAAAAGATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //