Array 1 778-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXDC01000049.1 Salmonella enterica subsp. enterica serovar 4,12:r:- strain SAL3274 NODE_49_length_24405_cov_5.11149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 777 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 716 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 655 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 594 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 533 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 472 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 411 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 350 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 289 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 228 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 167 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 106 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 45 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GAATTATTTCTGTGGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5020-3356 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXDC01000220.1 Salmonella enterica subsp. enterica serovar 4,12:r:- strain SAL3274 NODE_220_length_6035_cov_4.0509, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 5019 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 4958 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 4897 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 4836 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 4769 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 4708 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 4647 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 4586 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 4525 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 4464 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 4403 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 4342 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 4281 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 4220 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 4159 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 4098 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 4037 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3976 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3915 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3812 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3751 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3690 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3629 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3568 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3507 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3446 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3385 29 96.6 0 A............................ | A [3358] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12-405 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXDC01000096.1 Salmonella enterica subsp. enterica serovar 4,12:r:- strain SAL3274 NODE_96_length_15566_cov_4.67851, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 73 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 134 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 195 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 256 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 317 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 378 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTCCGATCTCG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //