Array 1 3404-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFWQ01000024.1 Neisseria weaveri LMG 5135 NW5135.2_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 3403 32 100.0 33 ................................ CCTGTTAATCATTGCTGATATACGGGAATCTTC 3338 32 100.0 34 ................................ CGCCAGTCAAGACACCATCTAAAAAGGCGCCTGC 3272 32 100.0 35 ................................ TTATCCGCTTTGTACGTATCCAGTCTGCGAGCTGT 3205 32 100.0 36 ................................ CGGTGCTGCCGTTTGGAACAAAAAAGAATGCATGGA 3137 32 100.0 33 ................................ TTTTTGCATAAGCGCGGTTTTGAGTCCTGCGCA 3072 32 100.0 35 ................................ TGTTTCCTTTATCGGATTCGGGGTTATCAACAGGG 3005 32 100.0 34 ................................ CCCGATGCCGTTTTTACCGCACCCTGAAGCAGGG 2939 32 100.0 35 ................................ CAGTGCATTTTGATTGAGTTTCACAAAATAATCAC 2872 32 100.0 36 ................................ ATTTTTTACACATCCATAAATGAACAATTGGAAATT 2804 32 100.0 37 ................................ ATCACTTCGGCCACGCCTTGACCAATGCTTTATGCCA 2735 32 100.0 35 ................................ AGCATGAAGGCTTCAGAAGCAAGCCCTACCGCGAT 2668 32 100.0 34 ................................ CAGACGGAAACAGCATATCAGGTTCATCAGATTT 2602 32 100.0 37 ................................ CGTTGGTTGTTGTCTTGCCATGTGTGTATAATAAGAC 2533 32 100.0 35 ................................ CTGTATTTCTCCGCCAGTGTTTCGGCGGATTTCAT 2466 32 100.0 35 ................................ CCCTATAAGACGGAAATCACGTTTTCGGAAGTGCC 2399 32 100.0 36 ................................ CCGCAGGTAGGTTCTTGCAAGACTTCGCAGGCCGTG 2331 32 100.0 33 ................................ CCCATATTTCCAGCCGAACTTAGTAAAATTAAG 2266 32 100.0 34 ................................ CATTCCGATGACGCATTTTCTGACTTTGTTTGCC 2200 32 100.0 34 ................................ ATCAAACGGCACCACAGGCCGCCAACTGTCGCGC 2134 32 100.0 35 ................................ CACTTTATTGATGCGCTTGCATCCGATGATAGGGT 2067 32 100.0 34 ................................ CGGAAATGTCGGAAAGTTCGTTTTCCATGCGCCC 2001 32 100.0 35 ................................ GAGCCTGCCGTGTCTGCAAACAAGGAAAAAGGCAT 1934 32 100.0 35 ................................ AAAACTGAAGAAACGGAGTATTCAGCAACATTCAG 1867 32 100.0 35 ................................ GTGTTGAGTTAACAGAAGCTGAAACAAAAGAGCTT 1800 32 100.0 33 ................................ CAGCATTTTTTGAAAACGTATATCGTCAACAGG 1735 32 100.0 34 ................................ TCTTCATTCAGCTTTTTAACCATCGCCGCGGAGG 1669 32 100.0 38 ................................ GACAAAATCAAGGCATTGCGATTTTGCCAAGCCTTTAA 1599 32 100.0 36 ................................ TCCGTTTCGGGGTTAAAAAACTGTGCCGACGCTGCC 1531 32 100.0 34 ................................ CTGCATCAAGACGGGACGGCTGCGGACTTGGAAG 1465 32 100.0 34 ................................ AGTGCCGAATAAATGGCGGATGGCATGCGGATGA 1399 32 100.0 37 ................................ AAAAAGATAAAGATAAATAAAGCTAGGAAAAAGAGAA 1330 32 100.0 36 ................................ ATTTTCCATACTCCGAATCCATGATTTTTCTGACGA 1262 32 100.0 35 ................................ ACGGTGGGTATCCAAACCCGCGATGAGGCGGTTGA 1195 32 100.0 37 ................................ ATAATCAGGCTCCCCTTGATTGTCATCCCAAATACAA 1126 32 100.0 35 ................................ TTTGTTGACGTAAAACAAAAGAATAAGCAGAACGA 1059 32 100.0 37 ................................ AAACAGCAGATACATAAAAGGCTTAAGCATGGAACTT 990 32 100.0 32 ................................ CTGAAATTGGAACACAATACATTGACCGTTTT 926 32 100.0 35 ................................ TCAAGAGCAGAAAGAACTTTTTGCAAAAGCCTTAG 859 32 100.0 34 ................................ AAAGCAAGAATCAGGCTTGTATAAATTGCAAGTT 793 32 100.0 35 ................................ ATGTCGTCATAAACGCTGAATGTATTGTTGCTTAA 726 32 100.0 38 ................................ ATGGTTTTGGCCGTCTGAAATGAGACAGCAATCTATTG 656 32 100.0 34 ................................ AAAGTCATAGAAATAATCGGCATTCGTAATTAAT 590 32 100.0 34 ................................ GTGTTGTTTGGCTTTTTCTGTTGCACGTTGCTGT 524 32 100.0 33 ................................ GGCTAATGCTTCGTAATATGTGCCTGTTGCTTC 459 32 100.0 28 ................................ TAATCATTGCTGATATACGGGAATCTTC 394 32 90.6 6 ...........................AC.G. CGCCTT Deletion [357] 367 32 100.0 35 ................................ TTCGGCCAACGGCAGATGCGGATTGGCCGCAATCA 300 32 100.0 35 ................................ TTGGTCAAGGACTTCGGTGTCTCTCATCGTCAAAG 233 32 100.0 35 ................................ TGTATCTCTCCCCTGAAACGGGCGATATCGGACAT 166 32 100.0 35 ................................ CGGCAGGAACTTTGATATTTTCTTGATATTCTGGT 99 32 100.0 35 ................................ ATGGCAGAGCCAGTGTGTTTTATCAGGCTGCTATG 32 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 52 32 99.8 34 ACAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AATAAGGGAAAATGGCGTGTTGATGTTGATTACTTATGATATTTCGCTGGAAGGCGCAGATGGGCAGGCGAGGCTGCGGCGCATCGCCAAGCATTGCCTGGATTACGGCGTGCGCGTGCAATATTCGGTATTCGAGTGCGACGTAACGCCTGATCAGTGGGTGAAACTCAAAGCCAAGCTGCTCGACACCTACCAGCCCGAAACCGACAGCCTGCGCTTTTATCATCTGGGCAGCAAATGGCGGCGCAAGGTGGAACACCACGGCGCGAAGGCGGCGGTGGACGTGTTTCAGGATACGCTGATCGTGTGAATCGCTAACCCGTGGTTCTCATGAAAATGCGGGGTGGTTAGCGATGCAGGATTGTTCTTTAACAATCAGGACATTAGGAAAGCGGGTGTGGCGGAATAAGGCTGTGTTATACTCGCTTTTCGCGTTTTCGGAGAGCTTTAGCGAATCAGGGCCGTGCAAGCCTTGATGGATAAAGGTTTCCGAGAAGGCT # Right flank : C # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ACAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 56-220 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFWQ01000030.1 Neisseria weaveri LMG 5135 NW5135.2_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 56 32 100.0 35 ................................ TGAAATTGCAGAACCAGCATTTCCGCCAGTCAAGA 123 32 100.0 34 ................................ AGGTTTTAGCCCCCGATCCCTTTATGGACGGTTT 189 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 35 ACAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GGGCGGCTGTGTGTTGAAACCCATCCAATTTCCCGATACAACCCGAGACAATTTAA # Right flank : CACGGATACCGACGGCAGTGTAACATCGCGCGCGTTTTGTCACCATTTAGCGATTTTTTTGTCACCACCCGACAAACAAACTGGTGACAAAAAATCCGCTAAAACAAACCCCGTTTAAAGATAGGTTAAACGGGGTTTTTAAACGCCTAAAGTTTGTACACCAGATTATCCTCGTATGAGGCATATTTGCTGACCTTAGCCTGCACGGTTAGCCGGGTAGAGTGATCAAATACATGCCAATTATCCAGCTGCATAGACACGACCGCATCAATATAGTCGATAAACTCCGACCGCGTAGAGCTGAAAAACAGATATGGCGGGCGTACAAGATTGACAAGTTTGAGGTAATCAACCAAGCCGAAGCGGCCGTCTTGAGCATAAGCCGCTTGTGTAGTGGATAAATAGGGCGGATCAAGCACCAACAATGCTTGCGGGTCGTCGGAAAACTGCGGAATCAACGTCTCGTAAGACTGGCGGATTATCTCCAAGCCGTCCAAGTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ACAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //