Array 1 1707285-1707436 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDS010000001.1 Nocardiopsis mwathae strain DSM 46659 Ga0415213_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1707285 30 100.0 31 .............................. CGGCCGGTTCCGTCCAGGACGCCGCGGACAA 1707346 30 100.0 31 .............................. CAACGACGGTGCGTGTCATCAGTGACGCCGA 1707407 30 73.3 0 ....................CT..CTGTGG | ========== ====== ====== ====== ============================== =============================== ================== 3 30 91.1 32 CTGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : AGGAGTCAAAGTGATCACCCCCCTGACCTCGCAACAGCTCGCCGACACGGAGCTCGCGAGTGTCACGTGGCACATAAGCAGCTTCAGCACGAACGGCGGCGCCACGTGTGTCGAGGCCGGCCCTCTCAACGACGGCACCGGCCGCGTCGCCGTCCGGCACAGCCGCCACCCTGATGGCGCCGTGATCGTCTACACCCGCCAGGAGTGGGAGGCCTTCACCAAGGGTGTTCGGGTTGGCGAGTTCGATTTCACCGGGTGACGGCTGTTTGCCTTGAGTGGTCGCCGGGCGGCTGTTACAGGGCCGCTGTCTACGTCGGCCAACGGCAATTGATGCGATGATCTGAGAAGCTAAGCGTCGGGTGGCTGGTCGGGTGGCCGAGAGGCACCTGACGGGCAATCGAAACACAGTGAGTGGTTTGCGGGCTTTGGTTGGTATGTCCAAATCGTGGGAAGTTGCATATTCGGTACCCTCGCCGGGATGAAACCGCAGGTCACCGAGT # Right flank : GGCGGTGGCCACCGGGCACTGGTGGGCTCGACTGGCGATCGATCCATCAGCGCTTGTCTTCACGAAGTACGGCGCGCGTCTCCCAGCCGTCACGTGTCCGGCGTAGCACCGGCTGAAGGTCCCCATAACCCGGTCGCCCGGCGGCCCGCCAGCTCTCGACCCACGACCGCAGTGTGTCCAACGCGTTCTGGGTTCCGTAGTGGACCACATCATGGCGGAACACGCCGTCGGTGACGGTGCGGCGGAGCACCGCTGCCCCGTCGGCGTCCGCGTAGCCGACGTGCCACCCGGACGTCCCCATGCCGATGACGGTGATGTCGTCCGGGAACCCGGCGTAGAGGTAGCCGGTGAAGTCCTCGTCGGATTCGGTGTCGTTCAGTTGCCGGTGCGGCGTCGTGGGAGCCGCAGCGATTTCCTCCAGCAGCCGCGCTGCCGCCTCAGCTCCGGTTTCCTGCCCGACCCTGGGGGCGCCGTCCTCCGCCCAGGCCGCCGAGATCCAC # Questionable array : NO Score: 4.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1714225-1714692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDS010000001.1 Nocardiopsis mwathae strain DSM 46659 Ga0415213_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================= ================== 1714225 30 70.0 113 T.........T.T........G...TTTGG TGGAGGCGTCTGTGTTGAAAATTCCCTGTTTGGGGGGTTTGTGTTTTGTGTCCAATTTTCGAGAAGTTGCATATACGGGCTCCCGTCCTGAATAAACCCGCAGGTCACCGAGT 1714368 30 100.0 31 .............................. TTCCTGCCAGGATCAGCCGGGCGTGGCTGGG 1714429 30 100.0 31 .............................. CCCTTACAGGCACCCCCTGTCTCCCTTGCCC 1714490 30 100.0 31 .............................. CCCTTACAGGCACCCCCTGTCTCCCTTGCCC 1714551 30 93.3 82 ............................TC GGCCGAAAGGTTGGCGTGGGAGGAGAGCCAGCCGCTCCCCGCATGGACCCAGCCCGGCGACCGTTTGGGCGGCCGCGGTGGC 1714663 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================================================================================================= ================== 6 30 93.9 58 CTGCTCCCCGCGCACGCGGGGATGGACCCT # Left flank : AGCTGCCGGTTCTCCTGCTCCAGGCCGGGCTCTTCAGGGGTGGCGGCCCCCGGGCCCTGCGGCTGTCGTCGATCCGGATCCAGGTGCGCAGGGTCGCTCGGCTGACTCCGAGGCCGTGGGCGACCTCGGTGATGGTGGCCCCGGGGCGAGAGCGGTAAAGCGCGACGGCGACGGCCTTGAATTGCGGTGGGTAGGCCTTGGTGACCATGGTGGGGACTCCTCCTGAGGCTCAATTTTCCTATATGTCCACTGCTTGGGGAAGTGTCCCGAGAGTGGGTGGGTGGAAATTCTGGCATGGGGACGTGGTGCGCGGGTGTGGATTGTGAACTTCCGTTGGCAAGTGTAGGTATTCGACATCCAAATCCCGTGTTGAGAAACCTTCGGGAGCCGTCTGAGTGTGGGTTCTCAGTGACTAGTATGGAAGTTGGTCTATGGGGTTTTGTTCCTGGCTTGTGCCGGGTTGATCCAACGGGATCTGGTTGTCGATTTCGTATGTGCCG # Right flank : TTCCGGGGATCACTGGCTACAGCTGGCGGATGCTGCTCGCTGCGCGGTATACGCCGATCCGATTCGGCGGCCTCCTCCCGCTACCATCGCGCCTGTGGGCATGAGCGTCCCCGTCAGACTGGTGGCTGATGGCAGTACGTCCTGTCAGCCTGATCATCGCCTCCCGCACGACGGGCCGTAGCAGGCTTCTTTGCTGCTTCCGCGTATAAGCGCCTAGTATGCATGCGTACTAGCGGCTAGTCTGGGGGTGGGGCCTATCAGTTGGAGATGGTGGAAGAGGTCCGGGAATGGTTGCACACTCTGCGGCGGACAGATCGTAGTACGGCGATCTTGGTCGGCCAGGCGGTCACGGCACTGCTTGATGCTGGCCCCAGCCTCGGCCGACCCTTGGTCGACCGTATCAAGGGATCGAGTCTGCACCGTCTGAAAGAATTGCGCCCTGGCTCGTCTGGGACTTCCGAGATCCGTATCTTGTTCATTTTCGACCCGGACCGGAGGGC # Questionable array : NO Score: 3.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-2.47, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1725567-1725718 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDS010000001.1 Nocardiopsis mwathae strain DSM 46659 Ga0415213_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1725567 30 100.0 31 .............................. AGCTCGGGCGGATCCGGGCCCGAGCGCTCGC 1725628 30 100.0 31 .............................. ATGGCCGGTTTCAACGCATTCGGCTCTCAGT 1725689 30 90.0 0 .......................T.G.T.. | ========== ====== ====== ====== ============================== =============================== ================== 3 30 96.7 32 CTGCTCCCCGCGCACGCGGGGATGGACCCA # Left flank : GGCGCAATTACGGATCGGACGGTGACTCGGCTGAGCTCTGGGACGTGATGTGGTGACCGTCATCGTTCTCACGCTCTGCCCGGAGGGCCTCCGCGGTTTTCTGACCAGGTGGTTACTGGAGATATCCCCCGGCGTATTCATCGGAAGTCCCTCTGCGCGTATCCGCGACATTTTGTGGACCGAAGTGCGCCTGTACGCGGGCAATGGCCGTGCCCTGTTGGTCTACAGCGCCCCGAATGAGCAAGGGTTCACGTTCGAAACCTTCGAGCACAAGTGGGAGCCGATTGACCATGAGGGCCTCACGCTCATCCACCGTCCTCACCAGCAGTCCAGTGCGAAAGCTGAGGGTGAAGGGAAACGAAAGAACTGGAGTAAGGCGGGGCGACATCGCCGTTTTGGGAGAAAATGAGGGCGACGTTCGCCTGTCGTCCTTTATGTCCGAATTTCAAGAAGTTGCAGATTCAGGGGTCCCGCCGTTGTAAACCCGCAGGTCACCGAGT # Right flank : ATCGATGTCATGTCGCCGTTCTCGCTCGCACGCCGCGAAGCCATCAGCGGTTACTCGTCGAAGGCGTTGCCTCCACGAATCGGTACCGCCGTGTCAGGGGATCTCGGAGCGCGCGGCGACGGGCCTCGCCCTATCCGGTTCCGGTGTGCGGACTCCTCTCACCACCAGCCACAGCATGAACGAGATCTCCGCGATCGCCGCCGGGGTCATGACGTACAGCGAGATCGCCGCGCCGAAGTCCGGGGCCAGCAGCCGTGCGAACACGTCGGCCAGGTGGCCGCAGGCTCCGACCATCAGCAGGTAGCCCAGCATCTTGGGGAAGTAGCCGGACTTCACGACCAGGTAGCCCAGCGGCAGCAGCCACAGGCCGAAGAACGTCTGGGCGATGAGGTAGCCGTCGTGGTACAGGTCGGTGAACAGCAGGGCGAGCCGGTCGGCGCTGTCCGGGCCGAGGGTGTCCTCGTAGGCCTGGCCGGTGGCGATCATCAGCGCGGCGTTCT # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3755394-3755243 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDS010000001.1 Nocardiopsis mwathae strain DSM 46659 Ga0415213_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3755393 29 100.0 32 ............................. GTTTGGCCGCCTCGCAGGGCAACAGGGCCCAG 3755332 29 100.0 32 ............................. GCTGGCATTCAGGGCAGCGAAGCAGGAACAGC 3755271 29 72.4 0 .....................GATTCGGG | ========== ====== ====== ====== ============================= ================================ ================== 3 29 90.8 32 ATGCTCCCCGCCCGCGCGGGGATGGACCC # Left flank : ACGCCACCAGTCGGAGCGAGGCCAAGCGCGAGCGGGCGCGTGCCCTGGGCGCCTATGCCGCCGTGGAGACGGGCGAGCGGCTGCCGGAGAAGGCCGACGCCGTCTTCGACAACGTCGGCGCGGCGACCTGGGGCCACTCCGTGCGCTCGCTCCGACCGGGAGGCCGCATCATCACCTGCGGCGCCACGAGCGGTGACGCCCCACCCGCCGAGCTCACCCGCGTCTTCTTCCTGCAACTCCAGGTCATCGGCTCGACCATGGGCACCCGCGACCAGCTCAAGCGCGTCGCCGAGTACTGCGCCCGAACGGGAATCCGCCCGGAGATCGACCGCGTGCTGCCGCTTGCCAACGCGAAGGACGGCTTCGCGGCCATGGAGCAGGGGGATGTGTTCGGGAAGATCGTCTTCACTGTCTGATCGGGGCTTATGTCAGCAATGCCTGAATCTCAAGAAGTTGCATATTCCGGCCCCCTGACCGGATAGAGTCCCAGGTCAACGAGG # Right flank : GCACAGGCGCGAACACGTCGAGAGGCGCCGCCCTGCGGGCGGCGCCTCTTGGTGGGAGCAGGGCGTCGGTCAGCTCTGGGGCTTATCCGAGTCGGGGTTGTTCTTGTCGTCCCGGTCGTCCTTCTCCTCTTTGGGTGACGGCTCCTCTGCGACCGCGGTGCTCCAGGGGTCGCCGTGGGGTGGGGTGGTGGACTCGTCGTCCGGCCGCTTCGGGGAGGGTTTGGGGCGTTCCTCCGGCTTGGGCTCGGTGGTGTCCTGCCGCGGTTCGGTCTCCTCCACCTTGGTTTCCCCCGCCTGGTCGGCGGGGGAGGGCGGTGGGCCCCACGCGGAGACGTCGCGGCGGATGACCTCGATGGTGTCGTCGAGGATGCGGCGCAGGTCCTGGGCCGCCGACTCGCCGACGTGCCCGGCCTCGCGCACCACGTCGCGGACGCGGTCGCTGAAGTCGTGCAGCGCCTTCTCGAACTCCAGCGGCTCGCCCCGGCGGCCCTGCTTGGTCC # Questionable array : NO Score: 4.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCCCGCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 5668531-5669477 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDS010000001.1 Nocardiopsis mwathae strain DSM 46659 Ga0415213_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5668531 30 100.0 35 .............................. TGGAAGCCGACCCCGCACCCACCACCGGCCAGACG 5668596 30 100.0 35 .............................. TGTACTGGTACTGCGCCTCCAGGTCGACGATGAGC 5668661 30 100.0 36 .............................. GTGAGCGTCAGGCGGTCCAGGAGGTGCTGTCGCGCC 5668727 30 100.0 35 .............................. GTGCGGATACAGTGCCGCATTCGCGTGATCACACG 5668792 30 100.0 35 .............................. CACTGCGGTGGAGGCGGCGTGGGAGCACGTCCGTG 5668857 30 100.0 37 .............................. TGAACGATTCGTGCGGCGGCGCACGGACGCGGATATC 5668924 30 100.0 36 .............................. GCGTGGTCCATGCCGTCCTGCAGGTCCCAGATCGAG 5668990 30 100.0 35 .............................. GTAGGCTGCAGCGTCTGCGCACGCACCGAGGCCAG 5669055 30 100.0 36 .............................. TGGGTAGCCGAGATGAGAACGCGCACAAGAAAAGTC 5669121 30 100.0 35 .............................. CTGGCGTCCATCGGGGCGGGCGGTTTGCTGCCCGG 5669186 30 96.7 35 ......................A....... CGAAGCGGGACGCACCGCGTGGTGATGAGTCCAAG 5669251 30 100.0 37 .............................. GGATGATCACCACAGCGGCGACGCGGAGAGAGGTCTT 5669318 30 100.0 34 .............................. ATGGACTCGGCGGGCGGCAAGCCCATGGCCCGCA 5669382 30 96.7 36 ........T..................... TCCTTGACGCCCTGGACGCCTACGACCCACCCACCA 5669448 30 90.0 0 .........................G..TT | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 98.9 36 GTCCTCATCGCTCCTACGAGGAGCAACAAC # Left flank : AAGATGAGCAGGATCGGCGCGACCAGTCGGCCGTCCCGACCGACATTCAAACGCCGGCGAATGCTGAAGAACCCGGCGAAGCGGAAGAGCGCGATGACGCCGCGCGTGCGCAGTTGCGGGTCGTTTCGTCAGCGGACGGGCGGGATGTGGTCGAGGCTCGGATTGGGCCGTTCTCCGACTCGGTTTCTCCGGTTCAAGCGGAGGCGTGGCGGTGGGCTCTTGCCCACCGTCGTGGCGACGGTTCGCTGCCCAGCGGGAGGGAGATCGCTGAGCGGTTCGCTCGGAAGGAACGGTGGGGGCGTCTGGTCAAGCAGTGGGGGCGGCAGGGCCTGCTTGACTACGCGTAATGGCTGGAGGGGCCGTCGGCGCGGGATCCGCTTCCTTGCGGTAGCGTCGGTTTCAGCGACACGCCGGGGTCGGTTGCGTGACTGGGGGATTGCTGAAATTCCTGAGCCAGGATGGCCACTCGTGGGCTCCCCCAGCTGCGGCTTTACCTTTGG # Right flank : TCGTTACGTCAGGGGCCATTGCTGTGCGCTGCTTGGCACGGCATCTGAGACCGGAATCTGTTCTCGGGTACATCGGATGACCGTACGAAATGGCTAGCGGAGTTCATTGCCGCTACCGCATTTAGCAAGATTCTGGAGTGGAAATTCGGAAACTGGCCTGATCCGGTCGCGTGTGCCCTAGCTGGTTCAGAGTGTCTCTTGTCGGTCGTAGCGTGATCGCCGTTACGAAATATCGGAGATACGAAAGGTCCGTCATGCGGCTACAGCTCACGGTGCGGACGACGGCATCGTCGCTGCCGTGGGAGCACGTGCTCAAGCCCGGCCGGGGCCTGGTGTATGAGCTGCTTGCTCGCGGCGCTCCGGAGTTGGGGGCGCGTCTTCACGAGGAGGGGTGGGGCGATACCGGGATGGTGCCGTTCGGGCACAGCTCTCCGGTTTTTCCCGCCGCTAAGCGCAGACGCGGCAGCTACGCGGTGGGTGGGGTCGGGCTCCTGGAGTTC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCTCCTACGAGGAGCAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.90,-8.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 6 5677879-5678565 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDS010000001.1 Nocardiopsis mwathae strain DSM 46659 Ga0415213_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 5677879 31 100.0 35 ............................... GGTGGTGGTACTACGCGTACCACGGTGGATGTCAC 5677945 31 100.0 35 ............................... TCTTCTCAGAGGACGACGACGTCCACTGACACAGC 5678011 31 100.0 35 ............................... GCCTCCCAGTACGCGAGGAAGGAACGCGAGGACTG 5678077 31 100.0 35 ............................... ACGTAGCTGCGGGCGCGGTGGGGGGTTCGTCCGGT 5678143 31 96.8 33 T.............................. GCATCCTCCAGGCGGGCCTTGAGACTGGCGACA 5678207 31 100.0 34 ............................... CACTGCTCTACAAGCACGCCGAGAATCCGGCGCC 5678272 31 96.8 36 A.............................. CGGCTACTCATCAGGCGTGGAAGGCCCCAGTGATCT 5678339 31 96.8 34 C.............................. ATGGCCACGCCTAGGCGGTCTTTGAATTCGTCCA 5678404 31 100.0 35 ............................... TCGGAGGACAGCGGGGGGAGCGGTGCGCGGCCGCC 5678470 31 100.0 34 ............................... CGGAGCACTGCCTGCCGGTGTCGCTGGGCCGGGT 5678535 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 11 31 99.1 35 GGTCCTCATCGCTCCTACGAGGAGCAACAAC # Left flank : TGGCCTATGACGAACTGCTGTACTTGGAAGCGCTACGTCTGACACGTACCTGCCTGGAGGGCGAGAGCTACAAGCCGTTTCGGATTTGGTGGTGAGGTCCGGGTGCACATCATCGTCGTGTACGACACGGCTGCCGAACGCAACCCGAAGATCCTGCGGACCTGCCGCCGCTACCTGCACCATGTCCAGCGCAGCGTCTTCGAGGGGCAGCTCAGCCCAGCACAGTTCACGCGTTTTCAAAGAGACGTGAAGGATCTTATCGACGATGAATACGACCACGTGATCGCCTATACATTGCCTCCTGGTGCTGTGCCCCAACGGGTGACCTGGGGCCAGGAGCGAGACGCGCCGAGCGACATCCTGTGAAGCAAGGGTTCGCGTGGGCCCGACACCCCAGATTTCAGCGCCGCGCCGGGGCCGGCTGCACTACCGGAGGATCGCTGAAATCATTGGGCGTCAATGGCCACTTGGACCGCCTCCCAGCTGCGGCTTTACCCTTG # Right flank : CTAGATCTCCATTAGGAAACGAACATTCAAGAGACCTTGCATGCTATTAGCTGGCCGTGTGCCCGACAGGGGTCGCCGGGCACACGGTTATTGTGCCTGATTCTGTGCGCTTACCCGATGTAGGGCTTCCGACCAGGCGTCGATTTCACGGTCGCTGCAGTCACACGCGCGCAGGAAGGCGCGAAACAGGTCTTCGGTCGGAACACGGTACGCTCCGGTTGCCCGGTTGCGGCGGACCATCTCACATAGTCTGCTGGCGCTGTATCCTCCCTTTCTCCGACCGTCAGGCAGGCGTATCCATGACCGCTCGGCCATTGTTCTGAAGCGCTTGTCGTTGCTAGCGTCGCGGAGTTTTAATACGCCCTCGATGAGGGCATCGATGGTGTGCACATTCTCTGGCTTTCCACGCACTTTTACGTTCCCGGCCATCTTGTCGTAGAGCTCGACTGCGAGGTAAATGTCCTCCTCGCGTGCTCCGAGGGCTTGCAATGTCCGCAGTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCCTCATCGCTCCTACGAGGAGCAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.90,-8.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //