Array 1 562371-565200 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016205.1 Prevotella scopos JCM 17725 strain W2052 chromosome 2 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 562371 37 94.6 33 ..T...............................A.. ACAGCCTCATCTACAGACGACATCTCTGGATGA 562441 37 94.6 35 ..T...............................A.. AGCTCAATTCCCACGTAAGAGTTGGTTGAGCCTGG 562513 37 97.3 38 ..................................A.. TTATAGATACTTGCTTTTTTTGTACCCAAACTTGTTTG 562588 37 97.3 35 .....................G............... TTAACTAACTTGTAGAACGTATCAGCTTTGATTCG 562660 37 100.0 32 ..................................... TCTTTGTTACAAACTTTATCGCCAATCTTAAT 562729 37 97.3 32 .....................C............... TCATTGTCTTTATCGTAGTTCATTTCAGATGA 562798 37 100.0 35 ..................................... TTACACAAATTAAGTGCAGTTTCTAATATCTCTTT 562870 37 97.3 33 .....................G............... ACCAAGTTTTCTCATTTTATTCCACAAGATAGA 562940 37 97.3 35 .....................G............... TTGCTACCCTCTATACAGTAGCTTGTACTTGCCCA 563012 37 100.0 39 ..................................... TTTGCTGTCTGTTTCTCGAAGCCTACGAATGTCTCTTGA 563088 37 100.0 34 ..................................... TTATTAATACCTAAGTTAAATTTCATAATTTTAT 563159 37 97.3 33 ...........C......................... TAAGCCTTTTTTCTGTTTAAGCATTATCATCAC 563229 37 100.0 35 ..................................... CATCTTTGTTCTTCTTTGACACTGTTTTGAGTGTG 563301 37 100.0 34 ..................................... ATTCCTATAATTGCAGGCGCAAACAATACGAACG 563372 37 100.0 35 ..................................... AACAGGTTTGTCCAATGTTAGACACAAGCGAATGT 563444 37 100.0 32 ..................................... TTCTAATCTCCAGCGAGGAAACTTTCTGCGAT 563513 37 100.0 34 ..................................... ATCATCTTATGCACGCGTCCATCTTCGAGTATCA 563584 37 100.0 34 ..................................... GAATTGCTAATATATAATATTTATGCTTTACGAT 563655 37 100.0 36 ..................................... AAATACCTCTTCAAGTACTGAGTCAACTTTCATTAC 563728 37 100.0 35 ..................................... AAGATAATAAGTGTTCCAAGACTCAAAACGCTTGT 563800 37 97.3 35 .....................C............... AAGATTTTAGATAATCTTCATAAAGGCGGTGCTTT 563872 37 97.3 35 .....................C............... CGGCGAATAATTCGTCCATGCTATCATAGTTCTGG 563944 37 97.3 37 .....................C............... TAGAACTCAAGAACAACATTCTTGGTTCCCTTTCTGT 564018 37 97.3 37 .....................C............... TAGAACTCAAGAACAACATTCTTGGTTCCCTTTCTGT 564092 37 97.3 36 .....................C............... GCTTTAGAAGAAGCCAATTCTATATGCTGAGATATG 564165 37 100.0 34 ..................................... AGTGTAGCGATTTTAATTTCCTTTTTCATTGTTG 564236 37 97.3 34 ..................C.................. CTTACGTCAATGTAGATCTGACACGCAATAAATG 564307 37 100.0 33 ..................................... TACTTTGTATGTTCATTCGATGGGATGATATCA 564377 37 100.0 33 ..................................... ACTTGCATTCTCATCATCACGAAGTTGTGCAAC 564447 37 100.0 33 ..................................... ACTCCATATACCGTAATATACTGTTCCATCGAT 564517 37 100.0 38 ..................................... TTTCTGTTATAAGTTTTACACTTTTCTAGCTGTGTATT 564592 37 100.0 34 ..................................... ATAGTATTAAAAAAGTTTATCTTCGTCGAAGTGT 564663 37 100.0 35 ..................................... CCCATATAACACTATCTTTATAACGATTATAATCT 564735 37 100.0 35 ..................................... CTTGAACCTATGACCTTCTGATTATGAGTCTGCTA 564807 37 97.3 34 .....................G............... ACTTGTTTAAGCGTTGTTGTTCAAAAATCTGCCA 564878 37 97.3 34 .............A....................... TGCTTACCACCATTAGCTACTACTGCATCCAACT 564949 37 97.3 36 .......G............................. TCACCAACTAACTGCTGACGAAGGTTAACCACCGAC 565022 37 97.3 34 ......A.............................. TAATCAGCCAGTTCTGGTATTAGGCGAATCATAA 565093 37 94.6 34 .....................C............A.. TTTAGTTAATCTTTATAATTCTCCTCGAAATGAG 565164 37 89.2 0 .............................G.A..T.G | ========== ====== ====== ====== ===================================== ======================================= ================== 40 37 98.2 35 CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Left flank : TCTGCACTGATTCATGGTGCGAAAGATACCATTACCTATGTGGGTTTTATGGGTGGCGATGGTGACCCAGCGGCTGTTGACCTGCTTGCAAAATATGTCCAAGAACGTCACAACGGTTTGAAGGTTGGTTGGTACACAGGGCGCACAGCAATCTCTCCGCTCATCAATCAACAGCATTTCGACTATATCAAAGTGGGAGCCTACCTCCGCCATCTTGGTGGACTCGATTTCCCACGCACCAATCAACGAATGTACCGCCGCTGCACAGATGGAAGCTTTGAGGATATCACTTCTCGCTTTTGGACACATCAGATAGGCAATAACCTATAAAAAAGTCACCTTTGGTTGATAATATTTAACCCAGCGTTCCTTGACATTTTGCTTAAAAATTACTACCTTTGCACTCGCTTAGAAGGTAGTTAAATTCTGTTAACATGAGCATGCGTTATTGGTCTTATAAATACCAATCCCGCTTATACAAAGGATTCGTATGTCTTGCG # Right flank : GAGCTGGCAAAGTTGAGGTGGATTATTGCTTAGTATTTTTAAGCATGGTACTTCTACTTTTTTTAGTAGTATTCTCACTTTAGGAAACATTAGACAGAGAGTAGCTTATAAGAAAAAGTCTGCTCCGCTTGACATTCTGTTTTAGAATCATTACCTTTGCAATCGCTTTACGGCTACTCCTAAATAATGGGAAATGTAATTTTAGAGTCCTTGTAAGTCAAAGAATTACAGAATAATAATGAAAAAGTTTAAGACAATAATCATGTTACTATTGGTTGCTATTGCATTGTATGCGCAGCGAACTCCAAGAGTGACGAATGATTTTAAGGAAGGAGACTTAATCTTTCAAGTATCGCAAAGTCGTCAGTCGCCTTTTATTCAATTAGCAACTAATTCTCCGTGGTCACATTGTGGTGTGATTGTAGAAAAGGAAGGAAAACTCTATGTGCTTGAAGCCTCTAATGTTGTCAAGCTCACTCCACTTAAGAAGTGGATTGATA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 844888-845210 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016205.1 Prevotella scopos JCM 17725 strain W2052 chromosome 2 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 844888 37 100.0 35 ..................................... GATTTTTTAATTTTCGTACTCATAAACTCTTTATT 844960 37 100.0 36 ..................................... CTCCAGTCTCTACCCGTTTGACGTTTTACCGCCTTG 845033 37 100.0 35 ..................................... CCGTATGTTTCTGTCCATTGCTTGGTTATCTTGTA 845105 37 100.0 32 ..................................... TAGGTGTTTTTTTCATATGAAAGTAAAAAAGG 845174 37 89.2 0 .....................T.........A..T.G | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 97.8 35 CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Left flank : TCGGCGCTGATTCATGAAACGAAAGGTACGATAACATGTGTGGGATTTATGGGAGGCGATGGTGACCCAGCTGAAGTTGACCGATTAGCACAACACGTCTTATCTCATCACCCGCACCTGAAGATTGGTTGGTACACTGGGCGTACTGCAATCTCTCCGCTCATCGACCAACAGCACTTCGACTATATCAAAGTGGGACCTTATCTTCGTCATCTCGGTGGACTTGACTCTCCTCGCACCAATCAGCGGATGTATCGCCGCAGCCCCGATGGCAGCTTTGAGGACATCACCTCCCGCTTTTGGAAAGCCCATGACGACAAGAACTTATAAAAAAGTTGTCTTTGCTTGATAAGATTTATCCCTGCGTTCCTTGACTTTTTGATTAAAAATATCTACCTTTGCACTCGCTTAGGAAGCAGTTAATTTCTGTTAACAAAAACCTATCTGCTTGGGCTTATAAATGCCAATCCCGCTTATATAAAGGATTTGTATGTCTTGAT # Right flank : GAGGTGGCAAGTTTGAGAAATATAGTAATTCTTTAAGCATAGTACTTCTTCCTCTTTTAGCAGTACTCTCACTTTAGGAAAGGTCAGTCAGAAAGTAGTTTGTAAGAAAAGGTCTGCAACTCTTTGCCTTCAACTTTGGAATGATTATCTTTGTCATTGCGTTCACGGCTACTCCTTGTGATGGTGGGTGTGTTTTATAAGCCACTGTAAGTCATAGAGTAACTAAATAATGACCGATTCGGGTTTAAGACAATCATCATGGTGAAATTGTAATATATGCACAGCGTTCTCTAAGTGTAACGAATGATTTAAGGTTTCTCTGGCTCTTATATGTCTGCTTAATCAGCAAAGACAAGTTGAACTAAAATAAGTTTGCTGTCATTCCTGTCACCTTTAACAAATGATTATAAGGCTGATTCACAATGAGTTATCCCAGAATGTTAAAAGTGACAGCAAATGAAAACAAACTTATTGTAGTATATGTTTAACCCAAATCGGTC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 944737-949691 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016205.1 Prevotella scopos JCM 17725 strain W2052 chromosome 2 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 944737 47 100.0 30 ............................................... TATAAGCAAGGAGAATTTAAGCCGATAATT 944814 47 100.0 29 ............................................... CAAACGTGAATTTATAAACCTTTTCGGAT 944890 47 100.0 29 ............................................... AAATCAGCTCGATCTCTTGTTGATAACTC 944966 47 100.0 30 ............................................... TAGCACTCGCCTTACCTTATACAATCGGTA 945043 47 100.0 30 ............................................... TACTTCTGCGAAATTGAAGCGTGAATACAT 945120 47 100.0 30 ............................................... CAAACGGTCTTGTTACTTCTGCTCAACTCC 945197 47 100.0 30 ............................................... TTTGCCCCCATACGCGTTTAGCGACCATAA 945274 47 100.0 29 ............................................... GGCATCTAATTATATGTCGGAAGATGTAT 945350 47 100.0 30 ............................................... TCAGATGATGATATACTTTCGCTTATTCCT 945427 47 100.0 30 ............................................... GTTCCCACGTATTCTAAGCTAAAGTATAAG 945504 47 100.0 30 ............................................... CCTTATGTTTGGGCTTCAAATGGTCTCGTA 945581 47 100.0 29 ............................................... GACGTTTGAATTTAACCCTGCTATGTTGA 945657 47 100.0 30 ............................................... GACGAACAGGGACGTATAAATCAAACAAGT 945734 47 100.0 29 ............................................... ATAGGGCGTCCGCACTTGCCTTATCTTAC 945810 47 100.0 30 ............................................... TTTGTAGCTAAATGCTCTGCTAGAGCAATG 945887 47 100.0 30 ............................................... CCTTAGTTTTACCATACCCTGTAGGTAATT 945964 47 100.0 30 ............................................... GATGCAGAGAATATGAATCTTACCAAGATT 946041 47 100.0 30 ............................................... TTACCTTATGCGGTGGGTGATTATGTACCT 946118 47 100.0 30 ............................................... CATGGGTGATGCTGGTTCTATGGATTTCGG 946195 47 100.0 30 ............................................... AGAATTATTTTCCTAAAACATTTGCGAAAA 946272 47 100.0 30 ............................................... CCCCTTTAACTCTTTTATCTGTATAGTTAC 946349 47 100.0 29 ............................................... ATGGCTGGGTCATACTCCTCTTCCCATTC 946425 47 100.0 29 ............................................... TTACCACCGTCAGTATCAATCACCTTCTT 946501 47 100.0 30 ............................................... TGTGTTCAACATTACAAGTTTCAAGACGCT 946578 47 100.0 29 ............................................... GGTGCAACAGATACAGTCCCTTGTGTATT 946654 47 100.0 30 ............................................... TATTCTATTACTACACCCTTGCCCAGACTA 946731 47 100.0 29 ............................................... AAATTATAATGTTATACTGTTGGCTTATA 946807 47 100.0 30 ............................................... GATAATATTGATAAGAATAATAAGAATAAG 946884 47 100.0 29 ............................................... ATGCTGTATCTCCTTTTATATAAGGCATA 946960 47 100.0 30 ............................................... GATAACACTGATAAGCGTAACAAAAATAAG 947037 47 100.0 30 ............................................... TTACTTCCTGTTGGTTGCTGGGAAGTTAAT 947114 47 100.0 30 ............................................... TTACAAAATGGAACGCCGTCAAGTGCTTTG 947191 47 100.0 30 ............................................... ATCGCTTACGAGGGTGTGAGATACCACAAT 947268 47 100.0 30 ............................................... ACATTCACGGGTATAGAGTTAAGAGACGAG 947345 47 100.0 30 ............................................... ATTGGGCTCATCGTTCTTTGATTTAATGAC 947422 47 100.0 30 ............................................... ATTATGTGTATTCATAGTATCGTTCCACAA 947499 47 100.0 30 ............................................... ATCGTACTACCACAACTAAGTAAGGAAGAC 947576 47 100.0 30 ............................................... TTAGCTTTAGATGTCGTATTTAGAGTATTT 947653 47 100.0 30 ............................................... TCCAGTTGATGTTGTTGAAAAGGCTTTAAC 947730 47 100.0 29 ............................................... TTAGTAGTTAAGTCATCCTGTATCTGTGT 947806 47 100.0 30 ............................................... TAGGGGGCAGCATAGCCCCCACAGCGTCCA 947883 47 100.0 29 ............................................... TGTTCCTCTTGCACGTCTGAAAGAGATAA 947959 47 100.0 30 ............................................... TTAAAGATAAGAAATAGATTTTTGGTCATT 948036 47 100.0 30 ............................................... GAATTTTGACATATTAAGTGTTGAAGCCGT 948113 47 100.0 30 ............................................... ATTGGGCTCATGCGTTCTTTGGCTTTTTGC 948190 47 100.0 29 ............................................... ATTGCAACGACACATTAGTCGGCTTATAC 948266 47 100.0 29 ............................................... GCAGAAACTATATCTATGCTACTGGTCGT 948342 47 100.0 29 ............................................... ACTGACTATTGAAATACCTTTGTATTATG 948418 47 100.0 30 ............................................... GTCATGGTCTTAATTAACTTTTGAGTTATG 948495 47 100.0 31 ............................................... TTATCAGTTTAATATGGGTTACACTCCAACT 948573 47 100.0 30 ............................................... CAAACTTATGATTTACATCTTCGTAAAGGT 948650 47 100.0 30 ............................................... TGTCAGGATGACGAAGAATCGTTGCGCTTC 948727 47 100.0 30 ............................................... ATAATGGACCTACTTTTTCATCAGTTATAC 948804 47 100.0 30 ............................................... TTATGGGAGTTACGGGCGTTTCCTTTTTGA 948881 47 100.0 29 ............................................... CATGTTAACACATCCTATCGTAACTATAT 948957 47 100.0 29 ............................................... TTAGCTTTAGATGTGTTCTTTAGAGTATT 949033 47 100.0 30 ............................................... ATAGCCGTCCTTATAGTTTACCTGAACAGC 949110 47 100.0 29 ............................................... ATTAGCATTATATTTCAATTACGAGGCAT 949186 47 100.0 30 ............................................... TCTTAAGATAGATTATTTATAAACATAAAA 949263 47 100.0 30 ............................................... TCAAGTGGTAAGGACATTTGAGGTGAGCAG 949340 47 100.0 30 ............................................... CTCACTGCGTTAATGGACGTTTCGCACTAT 949417 47 100.0 29 ............................................... GCAGCCGACTTGCAGCCTGTCAATGGTAA 949493 47 100.0 29 ............................................... ATAAATAAAATAACGAATGAAACAATCAT 949569 47 100.0 29 ............................................... CAAACTATTTTGCATCAGCACTTCTGATG 949645 47 93.6 0 ..................................G.T..A....... | ========== ====== ====== ====== =============================================== =============================== ================== 65 47 99.9 30 GTTGTGCGTAATACTGCAAAGATACACATTTTAAAGCAATTCACAAC # Left flank : GCTGCAAGTCTTGTTAAATGTTATAATGGAGAAGCTCGTGAGATATCTTATCCTTCTTTTCTTTGATGCAACGACTAAGTGAATATCGGGTTATGTGGGTGATGGTCTTTTTTGATCTTCCAACTAATACAAATAAGGAGAAACGTGCGTACATGATTTTCCGAAAAGACCTGATGAAAGATGGATTTACGATGTTTCAATTTTCAATCTATGTCCGGCATTGTGCAAGTAAAGAGAATGCAGACGTACATGTGAAGCGTGTAAAATCTTTTATGCCAAACTCTGGAAATATTTGCATAATGGTTATTACCGATAAGCAGTTTGGGGAAATAGAACTTTTTAGCGGAACACAACCCAAAGAGCCAAATGCTCCAGGTCAACAGCTTGAGTTATTTTAAAAAAGAGCCCTGTCAATGATGACAGGGCTCTTTTAAATAGCAGTTTTTATTTTGCACATATGTCTTGTTAGCTTCTGATTATCAGAATAATATCTGATTTCG # Right flank : CTTGCTTTTATTAAATCATCGATTTTTATGTTCTTTCTATGTTATTCTATACCTCTTATGAAATCTTTTGCATTTAGAAATTTGTTGCTCCAAGAAATAATTGAATATTTACAATCGAATGCTCTGATTCTATGTAGGATTGTATTTCCATCCGTGATGAGGTTTTTTTATTAGAGCTTTTTGAATGCTCTTACTATCAAATAGTAGCTATTGTTTTTCTATCTTGATACTCTTTTATAATATTGAACTATAGTCTTATGTCTTTTTTCGTTTTACCAATCACGGCATAAAATAAACTTGCTGTCACTCCTGTCATTTATGCTCTATACTTAACTTGTTAGTTTAGAGCAAGATAAATGAACTTTTAAAAGTGACAGCAAATTAAAATAAAACAATCTCTCGTGTATGTAATTCTTTCTCTTACATGAGAAGTCTTATCACACTATAGCTAATCGAGATATTTCAATGACTCGTTCTTCGTTTAATTTGTTCGTGTTTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGCGTAATACTGCAAAGATACACATTTTAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 4 1036933-1035020 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016205.1 Prevotella scopos JCM 17725 strain W2052 chromosome 2 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1036932 37 100.0 31 ..................................... ACAACACTCTTTTCATAATTTGTAGCACAGA 1036864 37 100.0 36 ..................................... ATGTTATCTTGCCCTTCTCAATTTCCTCTTTGATGC 1036791 37 100.0 35 ..................................... CTCTGCAAGAGTAGAATAGTAATCTTTAGGAGCTT 1036719 37 100.0 38 ..................................... TTGCCCGTGCATGATTTTATGCACTTTACCATCATCGA 1036644 37 100.0 38 ..................................... TGATTCAGGACGTGAAAGAATGTGATTAACTGCAAAAG 1036569 37 100.0 33 ..................................... GTTTTCTTTGTACCACAAAGTGTCGAAATTGAA 1036499 37 100.0 35 ..................................... AGTGCAGAACGACTACACACAAAAAGTACAATACA 1036427 37 100.0 34 ..................................... CTTACTAACTTTTGGAGTACCCGCCAAAGTAGCT 1036356 37 100.0 36 ..................................... ATCTTAGATCTTTCTGCTCTTTTTAAAGAATGACCT 1036283 37 100.0 35 ..................................... GCCTCCCTGTGCTGCTAAATCGATAAAATCAAATT 1036211 37 100.0 33 ..................................... GTTATATATTGGATTTATCGGGTTTCTGGAGCT 1036141 37 100.0 33 ..................................... TGGTTTATAACCATTTAAAGCCTCGATATTCCA 1036071 37 100.0 34 ..................................... TTGCAGATGTAACCTGTAACTGAAAAATTGTTCA 1036000 37 100.0 34 ..................................... CGAGCGATGGCTGCCTTGTCGAAGTTCTTAACGT 1035929 37 100.0 35 ..................................... ATCATATTCTGCTTTTGTATTGAATGTTTTTAAGT 1035857 37 100.0 34 ..................................... AATCTATCAATTACTAATAGCTTGTTTAGGTCAA 1035786 37 100.0 34 ..................................... CATATTAGGAAAGGCTTAAATAGTTACTACCGAT 1035715 37 100.0 34 ..................................... CAATCTTAAAACTGTTACCCGCAGTCAACAAAGA 1035644 37 100.0 36 ..................................... CAACCTTATTATCAGAACTACTAAAAGGATTAGTAT 1035571 37 100.0 34 ..................................... GCAGCATCATCATTGTCTCGAAACTGAGCAACAA 1035500 37 100.0 35 ..................................... CGACTAAGAGGATTAATAACAATAACTAAAAACTT 1035428 37 100.0 35 ..................................... GTAACAGCCTCAACCCATTCACGTTTTTCACCATT 1035356 37 100.0 39 ..................................... GTGCAGAACGACCACGCACATGAAATACAGTACAAATGA 1035280 37 100.0 37 ..................................... ATTGCAATACGTTTGTGTATCCTGCGTTCTTTACTCG 1035206 37 100.0 38 ..................................... TGAGAGTACTCTCACCAACGCACTACTCTTAATGGTCT 1035131 37 100.0 38 ..................................... AAAAACCTAAATCAATTCAAAGCAAATTCAACACCTAA 1035056 37 94.6 0 ...................................TG | ========== ====== ====== ====== ===================================== ======================================= ================== 27 37 99.8 35 CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Left flank : ATGCTATTCTTCGTTATGTATGATATAGAAAGCGACAAGGTGCGCTATCATATTGCAAAATATCTGGAACGTAAAGGATGTACTCGCATACAGCGTTCTATCTTCCTTGCCGACCTCGATAAGAAAGTCTATGACTTAATCAAAAGCGACCTTGAAGAAGTACAATCGCTCTATGACAATCATGACAGCATCATCATATGTCCCGCCTCCACTGATCAATTACAAGCAATGAAAATTATCGGTGAAGATATAAGTATAGACATCATAACTCGTTCGCGTAACACATTATTCTTCTAAGAGATAAAACTAACAAAACTCTTTTAGCAAAAAAGAATGTACTATTTCTTAAAGAATATTTAACGCAGTGATCTTTGACATCTTGAAAATTATTTGTAATTTTGCACCCGCAAATAAGCGGGTTAATTTATGTTAATAAAAGCGTTTCTAAAAGCTTGAACATACCCCAAATACTCGTATACAAAGGAACATAAGTCTTTGCT # Right flank : TAATCTAATAGTACTATAACAAAGATTCCCCCGATATTAAGAAATAACAGAGTTCACATATATCATAAGTTCTCCTGACTTAACTAAGATTATAGCAAGCTATTTTCTCAAGTTAAATTTCCTGTCACTCCTTTCAGCCTACACACGCATACAAACACTTGATTAACAGGAGATTTGTTAGATATGTTAAAAGTGACAGTAAATTAAAAACAACATTACTATCATAAAAATCACCATAAATCTTCTTCTAACTCAGTAGACTTTATCACTCCATATTTGGGAAATAGCAAAATTATAAACACGCAAAGCATTTATAATGGCATTATTTTTCGTAAATACTTCTTTCATAAACAGAACCAACTACCCCCTCCATTCCTACAAGTAAATAACAAAATAAGTAATATAAATGTTTTTGACTTATAGAAGTTTTTTCGTAACTTTGCTCTCAGAAACAAATTAAAATAAAGATTAGAACGTTATGCTTACATTAAAGCTCATCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 5 1052468-1051134 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016205.1 Prevotella scopos JCM 17725 strain W2052 chromosome 2 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1052467 37 100.0 35 ..................................... AACACGAACATAGTTCTCTTGAGGAACAACGTTCA 1052395 37 100.0 35 ..................................... TGCGTCTTTGCAGATGTAACCTGTAACTGAAAAAT 1052323 37 100.0 34 ..................................... TCTTAAAATATATTGTTTGAAGTACTTCATAAGT 1052252 37 100.0 34 ..................................... TCTTCCAACACCAAACTAAACTACAATTATAATA 1052181 37 100.0 36 ..................................... AGCTTTATTTTTTCTGTCATAAAGCTGTCTATTGCC 1052108 37 100.0 34 ..................................... AAAACATTTTCATATCTTTGTTTCTTTTTTATGT 1052037 37 100.0 36 ..................................... TCGTACTGAACTTCAGTATGCTCCTCGAATAAGTCA 1051964 37 100.0 34 ..................................... CCAATGCATCAGCGCCATTTGAGAAATTCAATAG 1051893 37 100.0 35 ..................................... AAATATTTATCGTATTTTGGAATTTCCGAGAAAAC 1051821 37 100.0 36 ..................................... AATTAATGAAATCATACATCACAATGCTAAATGTTA 1051748 37 100.0 36 ..................................... AGTGCCGCAAAGTGTTGAAATACTGATATTACCGCT 1051675 37 100.0 34 ..................................... CAAGCACGTGCGATTGTTGACATCTTGTTGTTGT 1051604 37 100.0 37 ..................................... CAAGGTATATATCACATACCAAGTTAACTGTGTCGTT 1051530 37 100.0 36 ..................................... AGTGCCGCAAAGTGTTGAAATACTGATATTACCGCT 1051457 37 100.0 34 ..................................... CAAGCACGTGCGATTGTTGACATCTTGTTGTTGT 1051386 37 100.0 35 ..................................... GCTAAAACCCTTCTTGCGTCCTCAACCTTTAGGAC 1051314 37 100.0 36 ..................................... GGAAGTATGTTTTTGTTGCAGAATTTCAAAGATATA 1051241 37 100.0 34 ..................................... CATTGAGAGAGTCCGCAATACCTAAGATAGTGAA 1051170 37 91.9 0 ......A..............A............T.. | ========== ====== ====== ====== ===================================== ===================================== ================== 19 37 99.6 35 CTCAGAGAGTATCTTCCATTAGAACAAGGATTAAGAC # Left flank : TCAGTCGAAGCCTTAAACCCATCCTATCACATTGATAGATATAATCTTACCCTGTTTTAATCAGCCGTAAATCATGATATTTAGAATTAAAAAGTAAGCAAATGTTTCTTTTAGTCCTGATTTCCATAGCCTGAAACCTTGACACTATTTCATCTCCTCTGAGTAGTAGTTTTTTTGTTTTGCCTGTCAGCTTATGATTGCGATACACCAAGACGTCACTAAATAAACGACTACTTCCTACGAATATTACGAACATTAGTTTATTCGGGGCAATCAACTCACACAAAACGTTATAGAGTCAGTTTAAGGGAAAAATGTAAGTCTGATTGAAAAAGCAGCCACAAAATAAAGCATATTTAACAAATTATCATACACAAGTATGATTCTTTATTTGTACCTTTGCAGCCGAAAAGAAAGCAGTTAATTTATGTTAACAGGAGGCTTTTTTAAGATCAAAGACACTTCAAATAGTGATAAATAAAGGAATCTAAGTCTTAGCT # Right flank : TCGCAACAATTATCCTTAACTCATACTTTTGAACATTGACTTGTTTTTCAATCTCATCAATGGATACATGTCTTAAATAAACTTCCTATACGTGAGATATTAGAAGTCTGTTGCTGCCGTCATTCTGATTTCACCATACGATAAACACGCAAACACTTGACTATATAATTTTCGTTATTAAGCCTACTGGTTTCTTGTACCCATTCAACAATGTGCATGTTCAGTGTACATGGAAAATGGTAAACATCATGAATACTTTTTCTATTTCATTAATAAAAATATAAAAAATGATGCACAATTTATTAATTTTTTATATCTTTGCATGCATAGTCCTAATCACCATAAATCATTTCACCGGAAGAAATTCCTTGATAAGAAAGATAGAGATTTAGCGACAAAGTCACTATAAACATTACCTAAGATATGAAAACAAAGAATGACTAAGATAAAAACACTAACCATACAGTTTGACACACCTTTACGGCGTTCAGAGATTCCCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAGAGAGTATCTTCCATTAGAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //