Array 1 292876-291257 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAEM01000020.1 Pseudomonas aeruginosa strain VET-46 PA4_A2_NODE_2_length_483708_cov_43.4149_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 292875 30 100.0 37 .............................. TTCAGCAGAAGCGGAGCATCCATCAGTACACCCTCGT 292808 30 100.0 38 .............................. CTGGAGCAAGCCAGGCTCACCGCTCTCTATAGAGATGT 292740 30 100.0 37 .............................. ATGGCCAGGTGCGCGCGCTGCGGCTCCGTGGGATCGT 292673 30 100.0 36 .............................. ATCGCGGTCACGCGGCCGACGATCGTCGTCCCGTGT 292607 30 100.0 36 .............................. TCGTGCTCGGGCTTGAACGACTTGTAGACGTAGCGT 292541 30 100.0 36 .............................. AGATCGAGGAGCTTGACGTGAGCGAAGTCACCAAGT 292475 30 100.0 36 .............................. TCTACAATCACGCAGGCGCCGGCATCGAAGCGCAGT 292409 30 100.0 35 .............................. TAACCCTCCCTTCACTGGCTGCGCATGCGCGGCGT 292344 30 100.0 36 .............................. ACCATCGCCTCTTGGCCAAGCCCTGCAGAAACCAGT 292278 30 100.0 36 .............................. ACCATTACCGGCGCCGACACGGATGCCACAGGGCGT 292212 30 100.0 37 .............................. ATTGCCGGCTCCGGCATGTGCCAGAACTGTGACGCGT 292145 30 100.0 36 .............................. TGCGGCGTGTACATGTGTCCGTACAAAGTCCTAGGT 292079 30 100.0 37 .............................. TCGTGCCCCCATGCCGGTCTGCATGGTGTCAACCAGT 292012 30 100.0 37 .............................. ATTGCGTGCGCCGGCTGCAACCGGTGAACGCAGGGGT 291945 30 100.0 36 .............................. AACCTGCCAGACCTCGATGCCGTTATCCAGGGATGT 291879 30 100.0 36 .............................. AGCAGTTGATCAGTTCCGGCGCAGTAGCGGCGACGT 291813 30 100.0 35 .............................. TGCGGGATCGCCCAGGCAGTAACGCACTTCATGGT 291748 30 100.0 37 .............................. GCCCAGCTCACCGACAGCACCCCGTAGACCTTGGCGT 291681 30 100.0 36 .............................. ACCACCAGGGTCTCGCGCGGCAGGCCGAGCACAGGT 291615 30 100.0 35 .............................. GGCTCCGGTCAGAAGATGTAGGTTTGTTGGCTTGT 291550 30 100.0 36 .............................. GCATGCGAGGCCATCGCGCTGGCCACCGTCTGCAGT 291484 30 96.7 35 ............C................. AGCTCGCTGACGTCGAGGATGCGGCGGTGGAAGGT 291419 30 100.0 36 .............................. AGCTCGGGCATGCCCTGGACACCATCGATCCATGGT 291353 30 96.7 37 ...............T.............. CCGTCGCCGGTGATAACCGTGTTCGTGAATCTGGAGT 291286 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ====================================== ================== 25 30 99.1 36 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGACAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGTTCGCAACTCTCTAGCTTATTGATTTATATACTCTTTCTTTGAAGCTAGGAGTTTGAAGGCGCGCGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : ATAGATTTTTGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAGCAACTCTTGTGTCACGGTGTCGCGGCCCCAGGTCGAAAGAAAGACTAGGTTGCGCTGCTCGTCACACATGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCAAGGGGCGGTGAAGCCCCTCGGGGTGTAGTCCAACTGGTGCAGGGGAACGTAGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTGAGCCCATCGGCTTGGTGCAGCGGCCCTTGGCCGATCAGGAAGACCTGGCTGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGTTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGTCGGCGATGCCGTTGTTGGAAAGTTGGTCCTC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 37073-37638 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAEM01000015.1 Pseudomonas aeruginosa strain VET-46 PA4_A2_NODE_30_length_67781_cov_34.2233_ID_59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37073 28 100.0 32 ............................ GTGCTGTGGGGTATGGACAAGTCTGGCGGCAA 37133 28 100.0 32 ............................ TCAGCCGAGAGCCTGCTGGCCCTGATCAAGGA 37193 28 100.0 32 ............................ ACGATGGCCGGGTGATCGGTATCCCTGATCAC 37253 28 100.0 32 ............................ ATCGCCGAGCTGGTGGAGCACTTCCAGAGCCC 37313 28 100.0 32 ............................ TGGCCGTCCCAGGCCTCTTGCGGTCTAGCCTC 37373 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 37433 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 37493 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 37552 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 37611 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 96.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGAGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47156-46167 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAEM01000015.1 Pseudomonas aeruginosa strain VET-46 PA4_A2_NODE_30_length_67781_cov_34.2233_ID_59, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47155 28 100.0 32 ............................ ACCGACGTATGCCAGCGGCAACAGCACGCGAG 47095 28 100.0 32 ............................ TGGGCGTGCTGATTGTTGTGGCGGCAAGTATT 47035 28 100.0 32 ............................ CGGATCAGGCATCACGCACGTCGTGCCGGACC 46975 28 100.0 32 ............................ TTGTCGCTGACGTCACCCAGCATCACCAGGGC 46915 28 100.0 32 ............................ GTGGCGTTCAATTGTGATGTCGTGCTGCTGCC 46855 28 100.0 32 ............................ TGTTGCGCGGCCAGCGCGGTGTTGACCTGCTC 46795 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 46735 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 46674 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 46614 28 100.0 32 ............................ AGAATGGCCTCCAGCCCCAGCGAATGGCCTGG 46554 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 46494 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 46434 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 46374 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 46314 28 100.0 32 ............................ CAAGGTCGTCACCAGTACTTCTTGGGGCGGGC 46254 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 46194 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGGCAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAACGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //