Array 1 15955-18084 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVG01000005.1 Pasteurella multocida strain HNA01 Contig005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15955 28 100.0 32 ............................ TGTTGCGGTTCTCGTATGTTTCACTTCAATAA 16015 28 100.0 33 ............................ TAAAAAACAGATTAATCTTATTATCAAATTTTT 16076 28 100.0 32 ............................ AGTCAATATGATAAGTCATGATAAAATTCCAT 16136 28 100.0 32 ............................ TGCGTTAGAAGATGCTTGGAAAAAAGGCTTAT 16196 28 100.0 32 ............................ ACCTAAGAATAAAGCGGTAAATGTAATCAGTT 16256 28 100.0 32 ............................ AAATTGCATTACGAAAATTAAGGTAGTCTTGA 16316 28 100.0 32 ............................ TAGTTTATTTATTTTACGAGCCTTAACAGCGA 16376 28 100.0 32 ............................ GGATTAAACGTGCGTTATGCACAACGTGAATT 16436 28 100.0 32 ............................ CCTGCTCGCATGGCGGTTTCAATTGCAAATAA 16496 28 100.0 32 ............................ GAGTAACTCAATGGCTTGTTGGTGATCTGTGA 16556 28 100.0 32 ............................ AAACGTATATCTGCACATATTGAAACGCGGCA 16616 28 100.0 32 ............................ TTCACAAAGCCACCGTGCGAATGTACTGCGTG 16676 28 100.0 32 ............................ TGTAAAACGATTCGTCCAAGGTCGTTTTCAAC 16736 28 100.0 32 ............................ AGTTATCCACTCTATCTTCTTGCGTGTAATCT 16796 28 100.0 32 ............................ GTGCTAGAATCAAGCTCAACCTCGCCACTTTG 16856 28 100.0 32 ............................ AAAAAATCTTAGGGATCACCGCATAATGGAAA 16916 28 100.0 32 ............................ TTGTCAATTTTGTTTTTCTCATAAACTCTTGA 16976 28 100.0 32 ............................ CTCTTTAATATATCTATCAATCACAGCAGAAA 17036 28 100.0 32 ............................ GTGGTGAGCTTAGAAAAATGGCAGAAGAAGGC 17096 28 100.0 32 ............................ TGATATTACAGGGCAGGAGGGAAAATTGATTT 17156 28 100.0 32 ............................ ATAAAGTTTCCCACGTTCAAAAATCACGTTGT 17216 28 100.0 32 ............................ CGAACAACAAAGCAGGATATTGCACACAAATT 17276 28 100.0 32 ............................ GTCTGGCGCATAAATGAAAAGGTTTTTAAAAT 17336 28 100.0 32 ............................ AAGCTGTTCGAGCGGTGGTACTGGGTGATAGT 17396 28 100.0 33 ............................ CATCAAGACTACCGATTTTTTCAATATCCATAC 17457 28 100.0 32 ............................ TGTTGCGCTGATATTGTTCGTTGCGTTTCTAG 17517 28 100.0 32 ............................ ACACGTCTGCGTTTCACTTCTGCCGGATTATG 17577 28 100.0 32 ............................ TCACGACCCATATGACAATCTTGTGCGCTATT 17637 28 100.0 32 ............................ GTACTTTGCCGCCGATTAATAAAATCATCTGG 17697 28 100.0 32 ............................ AATTTCCGCAGCGCTCAATGGTAACGCCCAGT 17757 28 100.0 32 ............................ TTCCCCGCGCCGTCATGGGAAATGAAAAAGAG 17817 28 100.0 32 ............................ AAATACGCTGTCATTCTTAAACGTGAAAGGGA 17877 28 100.0 32 ............................ AGCACACCAGCTTTAACTAATGAATCAAGCAG 17937 28 100.0 32 ............................ GTAGCCATCGGGCTATCTAATAACGGATGCAT 17997 28 100.0 32 ............................ TAGTTTGATTACAACCAATCGTTGTCCCTTGT 18057 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : AATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTATTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTAG # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCACAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATACATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 256479-253752 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVG01000002.1 Pasteurella multocida strain HNA01 Contig002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 256478 28 100.0 32 ............................ ATATGCACCTTCACAAAAAGCAATGACTGGTG 256418 28 100.0 32 ............................ GACCGCGGCATTGAGAGTGTCGTTTTTCGGGT 256358 28 100.0 32 ............................ ACGTTATGGTAATTGCTGGCTAATGACACCAG 256298 28 100.0 32 ............................ AGTAACATAAATTCTCCCTCTGTAAATAACGT 256238 28 100.0 32 ............................ CTTTGTTAGTTTTCTAGTGAGCCAATCACTAA 256178 28 100.0 32 ............................ TTGAGAATGTGAGTTAAACACTTCTACATTTT 256118 28 100.0 32 ............................ CAAAGCGCGTGTTATTTATAATGACTTCGATG 256058 28 100.0 32 ............................ AGCAATCACCAAAAAACACGCATTGCGGAATA 255998 28 100.0 32 ............................ GTTCTTGAGTGTCTAAGCCGTCTGTTCTGACG 255938 28 100.0 32 ............................ GGAAGAAATCAAAAAAGGCGATCGCATTGCAC 255878 28 100.0 32 ............................ TGACACAAACTCATCACCGCTATAAAGCATGA 255818 28 100.0 32 ............................ TCGTAGTTTATGCAACAAAACGCAAGTTGCTT 255758 28 100.0 32 ............................ TCGAACTTATGCAAGAGTTAGTTTTGCATGGA 255698 28 100.0 32 ............................ TCTTTAAAAGAATACGGCTTTACTTATGATAG 255638 28 100.0 32 ............................ GTTATGGAACGGTTGAATCCCGAGAACGATTT 255578 28 100.0 32 ............................ GCACCATGACGGCACGCCACACTGGCACTTGT 255518 28 100.0 32 ............................ AAAGGAGAAATATATGTCTGATTTAGCAACAC 255458 28 100.0 32 ............................ GCATTTTGTGCGTGCCAAAATTTGACACAAAA 255398 28 100.0 32 ............................ GTTAGAACAGCTAGGCTTTAATCAGTACATTT 255338 28 100.0 33 ............................ CATCGGTGTTCGTTATGTTGTTGGTTTCTTAAA 255277 28 100.0 32 ............................ TAAGCTTAGAAAACCGCTTTATGGGTCAAGCG 255217 28 100.0 32 ............................ ACTTGATTGCCTTGTTTCTCAAGTTCAGCCAC 255157 28 100.0 32 ............................ ATAAAACCATTTTGTAAACGTTCAATATGCAC 255097 28 100.0 32 ............................ TTTTAAACCAGAGTCATCTCCATTTCTTTCTC 255037 28 100.0 32 ............................ ATATTGTAGGCAGGTTTACAATGGATTATTTT 254977 28 100.0 32 ............................ TTCAATATAAAACCCGTCTTTGTAAAAAAATT 254917 28 100.0 32 ............................ CAAGTCTTGGTTCAGTACATTCCCATTCGTAG 254857 28 100.0 32 ............................ TAGAATGACTTGTAACATTTGGATCACAGACC 254797 28 100.0 31 ............................ TTTTGTCGCAAACCATTTCGCACACGCTTGC 254738 28 100.0 32 ............................ CGGAAGACATAAAGAATCAAATCCCTTTTAAT 254678 28 100.0 32 ............................ AACATCAGAACGTTGAAGATTCGGCAGTTTAT 254618 28 100.0 32 ............................ AATCATCTCACCTTCCATTTGCTCAACATTGA 254558 28 100.0 32 ............................ ACATTTTTTTATTGTTTTGCTAAAATGCCACG 254498 28 100.0 32 ............................ CGTGTCGCCAATCGGGATCACTTTTAAGCCGT 254438 28 100.0 32 ............................ GTCATAACAAAGCGTAGTTTTCCCTTTTTTGA 254378 28 100.0 32 ............................ ACTTTTTATTAAGATCTCCGCTACTGTGGGTT 254318 28 100.0 32 ............................ AAGTTGTTACATTAAACACGAGGAAATGAAAC 254258 28 100.0 32 ............................ TTTGGGGAATCCGTCAATTCCAATTCTACGGC 254198 28 100.0 32 ............................ AAGCCAGATCTAAACAGCCACCAAACAGCCAC 254138 28 100.0 32 ............................ GCTTGATACGCTGAAATCTAGCTACATTTCAA 254078 28 100.0 32 ............................ GATCGCGCGGTTCATTTCAATTGCGGGGGCAA 254018 28 100.0 32 ............................ AGATTCATGCGCACCGTTTAAAGCGTATGCCG 253958 28 100.0 32 ............................ TTTTTAGTTTGAACTTAAGGGCTTATCCCGTT 253898 28 96.4 32 ............G............... CCACGCCTTTTGAATCGCGGATTCTTTCCGCG 253838 28 96.4 32 ............G............... TTTTGAAATTCAGCAAGCAACTTGTTATAACG 253778 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTGCTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAATTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAACAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACGTCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATTGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGAATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //