Array 1 135235-140771 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERWB010000029.1 Bifidobacterium longum subsp. suis strain 2074B Contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 135235 33 97.0 34 ................................G TGTTGGCCGTGCCCGTGCTTGTGGCGGTCATGTC 135302 33 97.0 32 ................................G ATTACGTGCGTGACGATGAATACGCCGAGCAA 135367 33 97.0 34 ................................A GGTTCCTAGCCTCGGTATCCCCGGTGCCGTCGCG 135434 33 97.0 34 ................................G TGGCGTGCTTGGCAGACACCTCGTAGGTTGCCGA 135501 33 100.0 34 ................................. CCAATGGTTGAGGTACAGCGTGTTACCCAAGGTC 135568 33 97.0 33 ................................A TCCCGGTCATCGAGAAGGCCGTGGAACATATCG 135634 33 100.0 32 ................................. TGCTTTGCTGTTTGCTATCATCTCTGTTGCTT 135699 33 97.0 33 ................................T GATTATCCGTTGCATATCGATGTCATTGCGTTT 135765 33 97.0 34 ................................A TCCAGCGCGTCGAATACGTCAACGCCCATTGTAC 135832 33 97.0 33 ................................T CAAGGCTCGGCAGGCGGCGGCGACGGAAATTAA 135898 33 97.0 33 ................................G CATACCATACGTGTACAGCACGCGCGGTGTCTT 135964 33 97.0 32 ................................T GGAATGGCGTGGTTTATTGCTACGACGTTTCG 136029 33 100.0 33 ................................. AATTGGTTATACGTGGGATAATATGGTGTCTTT 136095 33 97.0 35 ................................A ATTGGTGGTGACTTGGGTTAGGCCGGACAGTTCGC 136163 33 97.0 33 ................................G TCGTAATACGACGGGTTATCAAGATCAAGCTCG 136229 33 97.0 32 ................................G AACTTGACCGAATCACCGGCGGCTTAGGCTAC 136294 33 97.0 32 ................................A TTGTAGAAAGTTGTTGGAAGCGTCCGCTGTTA 136359 33 97.0 34 ................................G CGTCCGCGGACATCAGCAGATCAGCCACGGTGTC 136426 33 100.0 32 ................................. AGTTCCACACCAAGCATATCCGCGTCCCATCC 136491 33 97.0 34 ................................A CGATCCCCTGTCCGACCTCGAACGTCGAGGTCAT 136558 33 100.0 34 ................................. ATCAGGTGCAATCGATACTTGGACCGAACGTTGC 136625 33 97.0 34 ................................A ACTGCGCCTTGCCGGCGGACGTGCCGAACGCCGG 136692 33 100.0 32 ................................. AAGACCGCAGGCCGGGCAATCCGCCTGCGGCA 136757 33 97.0 34 ................................G TTGAAGACGATGCTCCAACGCCTGTCCAATCCCA 136824 33 100.0 33 ................................. ATACCCCTGTTTTTAGGAGGATATTTTGACTCA 136890 33 100.0 33 ................................. ATGTCCAACGTCCGGTAGCGCTCGTTGAAATAC 136956 33 100.0 32 ................................. GGTTGAGTTTTCTCAAGGCCCGGCAGACGGCG 137021 33 97.0 33 ................................T CAATATTTTCAACATCAACGAAAAAGAAAACAA 137087 33 100.0 34 ................................. CGCCATTGGATAAAGATGTTTATCACCGTATGCG 137154 33 100.0 33 ................................. TCATTGTCTGCGACGTATGCGGAGCCGACCCGG 137220 33 100.0 31 ................................. CGGAATAATGTGGGCAAAATGTGGGCAAAAA 137284 33 97.0 34 ................................G CCCTGTTCGACGGATGCCCCACGTGCAACCGGAA 137351 33 100.0 33 ................................. CGTACCAGTTGATAGGGTCTGTTTTGACTGGCA 137417 33 97.0 34 ................................T TAACGTGAACACATAACCGGCGTCGTTAAAATCA 137484 33 97.0 34 ................................T GGTTGGCGGCGTATGAGTCTCCAAAAGTCACGAT 137551 33 97.0 35 ................................T CGAAATTAGACACCGTGGGGTTACGCTGGACGTAC 137619 33 100.0 34 ................................. GGTACGATGGCTTCCGCTGATGATTCATATTCCG 137686 33 97.0 32 ................................G GTATTCGCTGAACACTGGAACGTTTTCTGGGT 137751 33 97.0 34 ................................G ATTTCGCCCGCGTTGTAACGCCAATAGTCGGATA 137818 33 97.0 33 ................................A CATCGCCGGAACCGCACCAGCAACCCGTGCTAT 137884 33 97.0 33 ................................G TCGTCATACCTTTTGCAGCTGTTCCAGAGGAGC 137950 33 100.0 31 ................................. AATCGGTGGTGACTTGGGTTAGTCCGTACAT 138014 33 97.0 36 ................................A TCAACGGCACCCTGAAACGTCGAGTCAGGGGATGGC 138083 33 97.0 32 ................................A ACAGCTTTACACCCATTGTCGGTCAAAGCGAA 138148 33 100.0 33 ................................. AATTCGGAACCGAACTAGGTGATCTGAACATAT 138214 33 97.0 32 ................................A CGCTGGTCTGAAATGGAATCCTGCGACGGCGA 138279 33 100.0 35 ................................. GCCAACGAGCGCATCCAATTACGCTCCGTCTCATC 138347 33 97.0 33 ................................T CGTCCGTGCCGCAAGCCCAATCCAACGTCACCT 138413 33 97.0 34 ................................T CGTAATATTGCGCGGCGGAGGTTGCCCCCTGCAG 138480 33 97.0 34 ................................A CGAGGGTGCCGTCGGTGGTGGTGATGCCGCAGAA 138547 33 97.0 31 ................................T CCGTGCCGAATGACGACAAGGTGTCAAACGA 138611 33 100.0 35 ................................. GCATGGTCGCGTCCGCAGTACAAGTACCTGCAGCA 138679 33 97.0 34 ................................G CGACGACCTGAAAGGCTCAGGAAACAAGGCGTTC 138746 33 100.0 32 ................................. ACGACATGGAGGGTCCCCTACAGCAACGACAG 138811 33 100.0 34 ................................. CGACATAAACGGAATCCAGAACGTCACGTGGACC 138878 33 97.0 33 ................................G AGTTGGCGGTGACCTCGCTGCTGTCGCTGATTG 138944 33 97.0 34 ................................T CGTAAGCGTCTGGACTGCAAGCGATACGGTCATC 139011 33 100.0 34 ................................. TCCACAAGTTGAGCACGAGGATAATCCGCGAGAA 139078 33 97.0 33 ................................A GTATGAGGACTCCCTATGGGCATTATCGGTAAT 139144 33 97.0 32 ................................A AAGCGTCCGAGATTGTGGTGATGGCTTCGGTC 139209 33 97.0 32 ................................A CATCGGTGGACTGGTGCGGCTTACCGTCCAAA 139274 33 97.0 35 ................................A CCCGAGGGAACCCGAGCCTTATTGAGAATAGTAGG 139342 33 97.0 33 ................................A CGGTCATAGTGAACTGGCCTCGCGTCGTGGCCG 139408 33 97.0 32 ................................T CCAATATCAGACTGTCGTACGCGTCGTGGCCG 139473 33 97.0 35 ................................G CGCACCCATCGTTTGATCGCGCGTCGCGCGTCGGC 139541 33 97.0 33 ................................A CGCCACCTGAGCCTGCCATCCACCGTCAGATAC 139607 33 97.0 33 ................................A ACCGGTCGCGGAACATGCCGTCATCAACGTCAG 139673 33 97.0 34 ................................G CGGTGCGGTTGATGGTCACGTGGCCGTCCGAATG 139740 33 97.0 33 ................................A CGGCAGATAGCAGACGAGATAGGACGCGGCGAA 139806 33 100.0 33 ................................. AATGATCGCATGGCTCGGTTGCACATGATGGCG 139872 33 100.0 35 ................................. GGTGGTTTCGGAGCGCTCGTCCCATGGGTGCTCGA 139940 33 97.0 33 ................................T CCTTCGCGGTCTTGCGACTGCGCTTGCGTTGCT 140006 33 97.0 33 ................................T TGTTGTAGAAGGGAAGCACGTAGGCTCGTCCCA 140072 33 97.0 33 ................................T CGTCGTCATCGAGACGTGCCAGCGCTTGGCCTA 140138 33 97.0 34 ................................T GCGCCTCCATGGTGCGTTGGCCGATCATCACGGC 140205 33 100.0 34 ................................. GTCCTCCCCTTGCAGGATGCCGTCAAGGGAAGCC 140272 33 100.0 33 ................................. GATGAACGTGCAGCATATCCTCAACCGAGGCCG 140338 33 100.0 33 ................................. GTGAGCCGCGTGCTCATGGACGGCGAGCAGACC 140404 33 100.0 32 ................................. CGTTACGTTCTTTATACTCTCGGAACGCTTGC 140469 33 100.0 32 ................................. CGTTACGTTCTTTATACTCTCGGAACGCTTGC 140534 33 100.0 34 ................................. AGCGGAAATCACGGCAGTCCACCAATTGCCATCA 140601 33 97.0 33 ................................T GCTTAAAGGTTTCGTACAGCAGAGTGGAAAACT 140667 33 97.0 34 ................................T CCATAGTTATGGCAGTTGCTGAAAATTGTATCAC 140734 32 93.9 0 ........................-.......G | CCC,TCT [140757,140765] ========== ====== ====== ====== ================================= ==================================== ================== 84 33 98.0 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATC # Left flank : GACGAATCGCAAGATAGCCTGCGTTACTACAATTTAGGGGCGAAGTATTCTTCGAAGATTGAGCATCGCGGAAGACAGCGGCACCTGCCAATCGATGACGTGATGATGCTCTAATGTCGGTTCGTGTGACGGTTTTCCATGATGACTGGGCAATGCAAAACCTTACTGTGATGAAGACCAAGGCGGATAAAACGAGGTAGGACAGTATAGGACAATACGATTAAAATCGTGGCTGAGCATCGATGCTTGATGCTGCAGCCATGTGACCAGCGCGAACTCTGAGTTCTCATGAAATACTTGTTCTTTCGCACTGAGATTAATGAATGCTTGGAGACTGATTATGTTCTCCTCGTCGTTTGATAACTCAAAAGTGGATGGTCTGTTGATGTTTTTGGTTCGAGAATTTGTGTATTGAGCGATGTACATGGATTTTCGCGATAAAATCAGTTTTGAGAACAGACGGAGCTTCCATATTATGGAATGCTATGCCCATTCTCGCG # Right flank : GAAAGTGCAACACCCGTTAGATTGGAAATTGCCTAGAAAACCAGTCCGAAGGGATGTCGCACCTATGGGAGAAGTATATTCGCACCTGTCGGAAGAGGAACGCCAGGTCATCCAGATCGAGGTAGGCAACGGCGCCAGCATACGCGGGATCGGCGCGATGCTGGGCCGCAGCCCGTCCAGCATCAGCCGGGAGATCAAGCGCAACACATGGTTCCCGTCCAACGAGAACGAGTCGTACCGCCCGTACCGGCCGAAAAGACTGAAGGCGGGGCCATGGACCGGCCGCTACTACATCGCCGGGCCCGCGCAGCGCAAGGCCGACCGCAGGAGATCCAAGCCACGAAAGCCCTACCGGCTGTCGCACGACCGCCTGTGGGCGCAGGTGGCCGAATGGCTGGGCCGCGGCTGGTCGCCGCTGCTTATCAGCGGCAGGCTGCGCGTCCTGTGGCCGGACGATGCGCTCATGCGCGTGTGCCCGGAGACCATCTACCGATGGGTCT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 497-5653 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERWB010000001.1 Bifidobacterium longum subsp. suis strain 2074B Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 497 33 97.0 35 ................................C GGTATTCGCCCGGCCTGCTGTACACTATCGCCCCA 565 33 100.0 35 ................................. GACCATCCGCAAATTCTCGCGCGCTTTTTTAACAT 633 33 100.0 35 ................................. GACCATCCGCAAATTCTCGCGCGCTTTTTTAACAT 701 33 100.0 32 ................................. TTTCCGAACAGCAGAAAGCCCAGGAGCGGTCC 766 33 97.0 34 ................................T GGCGGATAACCCGATGGAGCTTGCGGCCTACACC 833 33 97.0 34 ................................G ACACATGCGGCGACGGATGCAGCAACGGCCAATA 900 33 100.0 34 ................................. AGGTCGCCAAGATCGTCCCGGTTTCCGAAGAGTT 967 33 97.0 36 ................................G CCAACGCCGGCATGATAGGCAGCGACGCGGGTACCA 1036 33 97.0 32 ................................G TGGATTCCGCCCGCCACCCGGAATTGTCGCCG 1101 33 93.9 34 ...........................C....G ACAAGGGCGAACGAGGCAGCGGCATCAACGGCGG 1168 33 97.0 32 ................................C AAATACATTTATAGGGATGAAAAGGAAGCTTC 1233 33 97.0 35 ................................G CATGAATCTGCGCGTCAAGCGCCGCGGAGCGAATG 1301 33 97.0 32 ................................C ACCTACGGTTGGCCGGATCGTTCCTGAGGTTC 1366 33 97.0 32 ................................C TCCTTATTGGATTCGATTGTTTCGGGGGCTAC 1431 33 97.0 33 ................................G AAGCCGACCTGACCACACATCGCATCACACAGG 1497 33 100.0 32 ................................. TGCCATGTGACCGGTGTGGAGATCAGGAGGGC 1562 33 100.0 32 ................................. AGTCCATCGGGGGACGCCATCCTTCGGGCAGA 1627 33 97.0 32 ................................G GCAACACCAATCGAACCGAACCGGCGCTCGCA 1692 33 97.0 33 ................................C GCGTGCGCGAACGCATCGGCCTGCAGGTCAAGT 1758 33 100.0 32 ................................. GAAAGGGATAATCATGGCTTTGGAAGTGAAGC 1823 33 97.0 32 ................................C ATTAGGAAGCCGAGGACCGGCGGCTTGGACCC 1888 33 97.0 35 ................................C GCGAGCAGATCGGCCCAATCATCAGCGCGTATGCC 1956 33 97.0 34 ................................G GTTTGCGTGATAAACGTCATGTCGGCGGGCGGAT 2023 33 100.0 33 ................................. CGTGAAACACCACCCATTTTATACCATATTTGA 2089 33 97.0 34 ................................T GCTCATAATGACGAATCAAGGCGAGCATGATGTT 2156 33 97.0 34 ................................C GCGAACCCGTGACCCATGCGCATGATATCCTCGA 2223 33 100.0 34 ................................. ACGACAACGCATTGTTACGCGCGTTGACGATGGC 2290 33 100.0 34 ................................. ACGCCGGTCGTGTTCATCACCACATAGCCGACCG 2357 33 97.0 33 ................................C CAGGGCGGCGTAGTCGTCTGCTGCGGTCGGCAT 2423 33 97.0 34 ................................C TCACCCTGTTCTCCACCATCCAAACCAAGTCGGC 2490 33 100.0 32 ................................. GCCGTCATGGAGAAGATGAGTGCGCTTGGCTC 2555 33 97.0 33 ................................T GCGTAAGGCGTTCGTCACGGCGCTTGACGTGTT 2621 33 97.0 33 ................................T TTGCACGTTATTTGTGTGTGCATATTTATTATA 2687 33 97.0 33 ................................T GAGCGGCCTGAGCGGCACTCGAAGCGGCGTTGC 2753 33 97.0 36 ................................T CTCGACTGCGCCCGCCACCCACCCAATTCTGGTGGC 2822 33 100.0 33 ................................. AGACACCCACGGGAATCGTGAAGTCCCAAGCAC 2888 33 97.0 34 ................................G CCATTGCCAGCGCACCGCCATTGTTGACGACGCT 2955 33 100.0 34 ................................. TTGGTTTGGCTCCCATGTGATTGTGAGGAATACG 3022 33 100.0 34 ................................. ACCACCACGGCAATTGATGATGCTTGCGAGGCAT 3089 33 97.0 35 ................................T TACTCAATCCCACGTGGACGTACTGGTCTGGACAG 3157 33 93.9 32 ....T......T..................... ACAAACTCGTACAGGAAGGATACTCGTGCAAG 3222 33 100.0 33 ................................. AGAAGGCCGAGGACGCGCAGGAATTTTACAATG 3288 33 97.0 35 ................................T GCACTAACTGGGCGAATGCGCTTTACGACGATAAG 3356 33 100.0 33 ................................. GCACGGTAATCCCCTACGCCGTGGACTCGGAGA 3422 33 97.0 32 ................................C GAGGTGCCGGGAACAACAACGGAATCGTTTAC G [3439] 3488 33 97.0 32 ................................G TGTTCCAACCATTCCAAACTGCACATGGGGAC 3553 33 97.0 33 ................................C GATACCGGCCAAGGTCACGCAGATCACCGGCAT 3619 33 100.0 32 ................................. CCACCGGAATTACCACCAGCACGCCACAAGCC 3684 33 100.0 33 ................................. TCGAAAGACTCAGAAAGGGAACGAATTGAAACA 3750 33 97.0 34 ................................G TAAGCGTTTCCGTGCCAATCATCCCGAGATGCTG 3817 33 97.0 34 ................................G TGCAGGCCGATGCTCTGATGCGTGTGATTTGCAA 3884 33 97.0 35 ................................C TCCACAAACTCCTCGGAGACTCCTACAAACAGGTC 3952 33 100.0 36 ................................. CGTCCGGCTGAAGCACGATGGACGAAACCGTATCGA 4021 33 100.0 34 ................................. TTCTGGCAAGAGGCTCTCTGACCCCGATCGCGTT 4088 33 100.0 33 ................................. GAAATGGCAGAACAAGCTTGGGCGGAACCAATT 4154 33 100.0 34 ................................. GCCCGGACGGCCGACATGTATCGCTCGCGGCCTG 4221 33 97.0 33 ................................C CGGCCTACGTGCTCGTCCCGGCCGCCGTGTCCC 4287 33 97.0 33 ................................C TTGAGACCCAGCAGTTCGACACCACGCAGATCG 4353 33 97.0 34 ................................C GCAAGGTCATCGTGCTTGTGGCCAGACAGAACGG 4420 33 97.0 34 ................................C GGCTTGGTGGCCGAATCGCAGGCATTGTACGCGT 4487 33 97.0 31 ................................G ACGTGTTCCGGTAGAAGAATTGGGCTTCGGC 4551 33 100.0 34 ................................. GATGGAAATCACCGGAGACCGGTTCGCACAGTCG 4618 33 97.0 34 ................................G TATTGTTTATCAGCCATCGTTTTTGACTGTTCGA 4685 33 97.0 35 ................................G AGGCATTGAGCATGGCCCGCTACACAGTGGGCGAA 4753 33 97.0 33 ................................T CGCACGACCGTAAGACGTGGCTTGACTCTGACG 4819 33 97.0 35 ................................C CGCCACACACAAGCGAAAACCCATATCTGGAGGCC 4887 33 97.0 35 ................................T GGATGTGGTCGCCATACGAGACGGCGAACTCCCTC 4955 33 97.0 34 ................................C GATCATCTGATTGAGTTCCGTCTGACAGGCGCCC 5022 33 97.0 33 ................................C GCAAGGTGATTGTGCTTGTGGCCCGTCAGAATG 5088 33 97.0 34 ................................C ACGAGCGTGCGGCGAAGTAGTCCACGAGATCGTC 5155 33 100.0 34 ................................. TGCGCAGCAGGCGTTGAATCTCGTCCTGCGGCTG 5222 33 97.0 34 ................................T CTCCAATGCGGCCGGAGCGGTCGGTGGCTTGGTA 5289 33 97.0 33 ................................C GCAAGTGGAAAGTGGACGTGGATAGCCTCTACC 5355 33 97.0 35 ................................T TCCGACACTGCGCACTACTACCTGATCGTCGAATA 5423 33 100.0 34 ................................. CCCCATATCCTACACGGGGCGAAGCCATACCCGA 5490 33 97.0 33 ................................T ACCGCATGGGGCCGGCCCTGTTCCGGCTGCTGG 5556 33 97.0 32 ................................C ATCGTCAAGAACAAGAACCGCTTCGTGACCAT 5621 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= ==================================== ================== 78 33 97.9 34 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : TCAGTGAGGCCCTCATGTTCGGCAGGAACACCTCCGCGCAACCGGAAAAATAAGGAAAATGCATGCAACTGCCTAAACCCGAAAAAAATACATGACTAAACACGAAACACCGACTTGACGAAATACACAGCGTCACGCACGACAACGGCACCGAGTTCGCCCACCACGAAAGGCTGCGCGACGGGCTGGGCATGGCCACGTACTTCGCCGACCCGTACTCCAGCTGGCAGCGGGGAAGCAACGAGAACCGCAACGGCATGATCCGCCGGTATCTGCCCAAACGCTGCGAGATCCGGATGGACATGGCAAAGGAGGTCAGGGAGATCGTCGACGAGATCAACAACCGCCCCATGCGCGTGCTCGGCTACCGCACGCCCGCCGAGGCGTTCGCCGACGAACTGTTAGAATTACAGGACCAACAAGGGTGTTGCACTTCTAAATAGACATCGGGGTGGATTGAAATAGACTGGGGATATCCTCGGAGCGGGCTATCGTAG # Right flank : CGGCATGGAATTGTCCCCGCTATAGACGTTGCCACTCATGGTGGCAGACGCGGAGAGATAACCGCGCGACGGCTAAACCGGACGTCTGGAATTGTATAATTGGGCTCACTGTAGCGAGTATGCGAGGTGAGCCATGAGTCTTAGGGAGTTAAGGCAGAAACGCGGGTTAACCCAGCGTCAACTAGCTGACAAGTCAGGCGTGCCGCATACACGAATCGCCACGACTGAAACCGGGTCAAGACCTATCGAGAACATGAGTCTTGGCATGGCTATCAAGCTGTGTGACGCGCTCAGGGTATCTAATCCGCGCAAGCTGTTAGAGGCTGATAGGCCGAAAGAAAGCGCCGCCAAGTAGGCGGGCGCGTGCCCTAATCAATTCTTCGCCCGACTGTAGGCGTTGTGTGCAGTCGGCCTAAACTCACTGGGTTCACCCCATAGTCTAGGTACTCATGGCGTGTCCCAAGGTGGACGGGATACGCTGAAGTCAATTTTGAAAGTGA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //