Array 1 26788-27181 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKMD01000009.1 Actinotignum timonense strain UMB0063 .16933_8_4.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 26788 28 100.0 33 ............................ TGGATTCAGGAAAAAGTGGTACCGGCGCTTAAG 26849 28 100.0 33 ............................ CATGGGTAAATGATTGGAGTGAGGGCGCCGAAA 26910 28 100.0 33 ............................ TGATGATCCTACACGCAGCGCAACCCCTCACGC 26971 28 100.0 33 ............................ CGGCCTGGCATAATCCCGAGGGGTAGTGAGATC 27032 28 100.0 33 ............................ CAAGGAGTTGCGCCTCGATCTGGAAACAGCAAT 27093 28 100.0 33 ............................ CGCCATCGAAACGGTTAAGGGATTCTTTAGCGA 27154 28 75.0 0 ...........ACGA.C.....C..C.. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 96.4 33 CTCTTCCCCGCGTACGTGGGGGTAATTC # Left flank : ACCGATATTGCCGACGGCAAGGAGCACGCTACTGACGCTTAGGAACCTGCTTTCCGCAGGAACCAGATCTCCAAAGGAACCCGGTCACCAGCACATCTCACCGCTGCTTGGCCACATAGCGCCGGGCAAGATTGCCTGTTCGGTGAGGGCGTGCAGTTTCGGTTACGCTAGCCGTGCAGTTTTAACTTGCGCTTGACAGACAGCATGTTAAGGGCAAAGAACCAGGCGAAGAAGATACACATGCCCCGTCATACTGGGGCACCGCCGGTCTGGTAAGCGCTCTGTCACCATAGTCAAACCTGGTAATCAGAAGCGCCCCCCTTGTGTCCGATAACGACAGGCAGGACGTAATAAGCTAAATTTGAGGTGTGGGAACTGACATGCTCGTGACACGCGGAGCACTGGCGTACCGGGAATTTCTCGCAGCGAACCGTAAATTTGGAACTCTATTCCAGTCAGATTTCCGGATCTGCCGCGAGTAAACAACCAGGTCAGGCAGG # Right flank : CCGCTGCTACCCCACACCACTCACCTAAAGTAAACGACGTGCAATTTCGTTTGCGGCAGATTGGTAACTTCACCAACCCCGAGATCTACAGCTTCAAGCCGTGCCACTCATTGCGCGGAAACGCTACCGCACCAGCCCTTCGCGGCGCCGTGCAGCAGACATCGCCCGCTGCGCCTCCCGGTCCGCCTCGCGCCGGCGGATTGTTTCGCGCTTATCCCATTCCTGCTTGCCCTTGGCCACCGCGATTTCCAGCTTGGCCAGCCCGCGCACGAAATACAGCTCGAGGGGCACAATCGTATAGCCCTTCGCCTCGACCGCCCGCGCCAGCTTCTCGATCTCCGATTTGTGCAGCAGCAGGCGGCGCTTGCGGGTAGGCGCGTGATTCGTCCACGTCCCCATCGCGTAAATCGGGATATTAATCCCGTGCGCGTACACCTGCCCGCGATCCACCTCAATCCAGCCGTCCACCAGCGAAGCACGCCCCATGCGCAGCGCCTTCA # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGTACGTGGGGGTAATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 312188-310692 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKMD01000001.1 Actinotignum timonense strain UMB0063 .16933_8_4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 312187 29 100.0 32 ............................. GACTAACGAAAGGTATACATAATGTTTCACAC 312126 29 96.6 32 ............................T GCCTACGGGCCGCTACTTTGCGCGCACGGCAA 312065 29 100.0 32 ............................. CTGAATCCAGGTCCCCTGCGTCTTCGCGTACT 312004 29 100.0 32 ............................. GCATCGGCGGGTCGCCGCGTGAAAGTGAATCG 311943 29 100.0 32 ............................. TGGTGCGCGCGCTCTTGTTAGGCAGTAGGGAA 311882 29 96.6 33 ............................A TAGCAACTCTCAGCTTTGGAATAATTGACTGCA 311820 29 100.0 32 ............................. GTGCAGCCGCTCCACGTGGCGGGCACGCTCAC 311759 29 100.0 32 ............................. CTGCATGCAACGCACGCGCATTAATTACGCGG 311698 29 100.0 32 ............................. GCTCGAGGTGGTGAGCTGGCCGTTGGCGTCGC 311637 29 100.0 32 ............................. GCTCGAGGTGGTGAGCTGGCCGTTGGCGTCGC 311576 29 100.0 32 ............................. CCTGAGAAAGGAGAAATAATGTCTACACGTAA 311515 29 100.0 32 ............................. AACCGGACGCGGCTCGTCGCTGACCGCGAGGC 311454 29 100.0 32 ............................. AAATACGAGGATCAATGTAACGAGGCTTGCTG 311393 29 96.6 33 ............................T AACGTAGCGCAGTGACGGGGCCAGTAAGTCACG 311331 29 100.0 32 ............................. GCATGCGACTGCGTATCGGGTTTTCGTGGACC 311270 29 96.6 32 ...............G............. GCGTGAAAGAATCCGCGGCCGGCCTGGTGGAA 311209 29 100.0 32 ............................. CCCTATCCCGAATTACATCCTATGCGACCGGT 311148 29 100.0 32 ............................. TCGGAAGGCTTCGTGACCATCAACGGCAACCG 311087 29 100.0 33 ............................. GCTCAGTAAGTCGTGTGTTTCGCTCCAGCATCG 311025 29 100.0 32 ............................. GCATCGGCGGGTGGCCGCGTGAAAGTGAATCG 310964 29 100.0 32 ............................. CCCCAGCGCCGCCGGTGGGTGAGGCTGGGAGT 310903 29 100.0 32 ............................. ATACGCAAACCGCCCGGCGCATTCGCGATCTC 310842 29 100.0 32 ............................. CCGGAATGTCTTGCGAATAGAATATTCCGGCC 310781 29 100.0 32 ............................. GCCAAGCAAGCTCCCCTGCGTTCACTGCGATG 310720 29 89.7 0 ........................A..GT | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.0 32 CTGTTCCCCGCGCGCATGGGGGTATTTCC # Left flank : ACGGATAGGAGAGCGGGATGTTCGTTGTTGTTAATGCGGTCGCTATCCCGGATCACCTGCGTGGATACTTGAGCAGATTTCTTTCCGAGGTGACCACCGGATTGTACGTGGGAGTTGTTTCCGCGCGAGTGCGGGACAATTTGTGGGAACGCGCCGTATCCGCCGCGGGTACCGGCAGCCTCACTCTTATTTATAACGACGCCGCCCGTGAGCAAGGCTTCGCTCTGCGCAGCACGGGAACCGGCAGTCGCCCAGTCCTTGATCTGGACGGCATGCTGCTTATCGGGACGGGTGCGGAGGATGCGTCTGGGTAGGATGGAGGTGACATGCCAGTATCTTGTGAAGACATGAAGGAGGGATTGAGATAAATTTGAGAGGTGGGAGCTGACATGGTTGCAATATCCGGTGCATTCTCATATCCCGGACAGAGCCACGAATCTGGAACTCTGTTCCACTGTTATTTCCGGGTCCGCCGCCGATAAACGACCAGGTCAGGCAGT # Right flank : CAAGCGCAAGTTAAAACTGCACGCCTAGCGCAATACGAATTGCACGCCTAGCGCAAGGAAATGCACCCCCAGCGCAACTAAAACTGCACGTCCTCACCGAACAGGAAATCTCGTCCGGCGCCCGAATGCCCCTACCGGTACCATCACTCAACGCCGCCTTCGGCGGGCGTCGGTACCAGCCGGCACCCCCCAAGTCCTCCCAAACCACCCCGAAACCCTGTTTCTGATACCCGCAGGGCGGGCGTAGCCCTCCACTCAACGTTCGCCGGCAATTGTTCTCCGCGCGAGTGGAGGTAATTCCATTGAGCGGCAGTCCCTAGAGTTCGTGAAATACTCATCCCCGCGCAGGTGGGGTGGTAATTTCTATCGACGAAGACTGTCTATGAGGTGAGACAAAGCCAATGGTGGAACCACGGGCACCGGCGGGATAATACGGGAGCGTGGCATTGGTGACATGCTGCACCTAGCGGCGTCCGATTTCTCGGCAGCTACCGTTGGTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGCATGGGGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 586653-585169 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKMD01000001.1 Actinotignum timonense strain UMB0063 .16933_8_4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================== ================== 586652 29 100.0 32 ............................. CGTATTCATGCCGCGCGGCGAATGGCGCAGCT 586591 29 100.0 32 ............................. ATGCCTAGCACGCCATCGATGCTGTAATCGGA 586530 29 100.0 32 ............................. AAAGACCATTGAGACACAGACTGCCGGCTCGC 586469 29 96.6 32 ............................T ATTGGTGCTGAGATCGGGCGGGTGTTTATTGA 586408 29 96.6 32 ............................T AATCTCCATTATTGCCCCTCTCCTCCTTGTAG 586347 29 100.0 32 ............................. GCATATACGGGTGTGGTCATGCGAGGGCGGGG 586286 29 100.0 32 ............................. TACATGGCTACCATCATGGATAACATCACCAT 586225 29 100.0 32 ............................. GGGGCCGAGCGGGTCACGCGCGAGCCGGATAG 586164 29 100.0 32 ............................. AAAGACCATTGAAACGCAGACCGCCGGCTCGC 586103 29 100.0 32 ............................. GCTTTGATGGATTCACGGGTGCGCGGGAACGC 586042 29 100.0 32 ............................. CGAGATAGTGCCGTAATTACCCTCGAGATCAG 585981 29 100.0 32 ............................. ATCTGCCGAGCTTGCCTTGCGAGCAAACAGGC 585920 29 100.0 32 ............................. AGATTTTAGCGATGAAATTACGGGTATTGCGT 585859 29 100.0 32 ............................. GGCGGGATGAACAACCCGCCACCGGCCCCCAC 585798 29 96.6 32 ............................T ATCGCCGAGGCCGAGCTCGGCGGGGAGCTGCA 585737 29 100.0 32 ............................. GTCGCCGCCGCGCATGATATTCGGGATCATAA 585676 29 100.0 32 ............................. GCCCGGCGAAACATTCGGCTCTCTCAAAGCTG 585615 29 100.0 32 ............................. CTTCGGGATTTTGTTCCCGCGGGTGAGGAAGC 585554 29 96.6 32 ............................T AGATAAGTCATCCAGAGTTGACATCTCTACCG G [585537] 585492 29 96.6 32 A............................ TCGTAGCCGGTGAGGTTTTTACGATCCCTGAT 585431 29 93.1 32 A.......................T.... CAAGGCGCATATACCCGGCGCGTAGGTGTGGC 585370 29 89.7 32 .............G..C.......T.... TTCCAGGACACCGGCGATATCGACGATATGGT 585309 29 82.8 83 ...........A..A.C..A....A.... CTATAACCGAGATACCGGGAATCGAACCTCTATTGTGTGTTGATCTACCATAGTCGTCTCCATGGGCTAAGCTCGTAACGAGC 585197 29 69.0 0 GGT....A...CA...C.T......G... | ========== ====== ====== ====== ============================= =================================================================================== ================== 24 29 96.6 34 CTCTTCCCCGCGCAGGTGGGGGTAGTTCC # Left flank : AAATCTGCTGAACTAGGTGTGCTTTCCGCCTAGATCTCAGCATCGTTGAGAAAGCCACTGGTGAGTACGTTTGCTACGGGCGTGCTCGCGACACCAACATAGATAGGTTCGTCAGGGCCTGGTTCGTGTGGAACCCTGGAGCCGAAAACAACTACCAACGAACTGCGCCCGGAGAATACTCCTTTGGCTATCGTCGGACCCGGGTTCGATTCCCGGCATCTCCACTTATGATGAGCACCCACTCCGATTCTTCGGCGCGGGTGCTCACGTTATGTAAGCGCCTTGTCGCCACGGCCCAACTTGATAATCAGAAGCGACTCCTCGTGTCCGATAAGGACGAACAGGGCAGAATAAGCTAAATTTGAGGCGTGGGAACTGACATGAAAGCCATGCTTGGCGGGCTGGCAATGTGGAGGCGTCTCGCGGAGAACCACAAAGCTGGAACTCTGTTCCAGCTTGTTTTTCGGGCCCGCCGCGAATAAACGACCAGGTCAGGCAGT # Right flank : CCTGCTTAGGACCGCCTTCCCCGCGTGAGCGGGAGTAGCAGCACGTTTCCGATTGCGTATTCTCCCACATGTTTAGCTTCAGGCTCGCGGGGAGAAACACACTTATAAACACAGGTGAAATATGTTGATACTCGTATCTTCTTCCGTCAATCTCGTTTCATTTCAATGAGGGAGAAGCATGGACAATATCAATGCTTTGACGGATATTCCGTTACTTGTTACTACGCGCGGGCGATTATCAGTTCGCGATGCACTTCTCAATGCTCATATTCGAAAAGATCCCCCTAACGAAAAAAAGGACTACGAACCGCTGGTTGAACCGGCAGTCGAACCAACAGGTGAACCAGTAGTCCTAGATAAGACTGTTCCGGGCTACGTGTACGGTGCGCAGCTGAGGTTGATGGCGGCGGTTACCGCCGTGGCTGTGAGGCTTTCCAAGCGCACTCACCGGGATCCGTTCCGGATCGAAGAGCAATCCATTCTTTCGGAAGGGCTTGAAC # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCAGGTGGGGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //