Array 1 27426-30377 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXWN01000004.1 Synechococcus sp. 7002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 27426 37 100.0 36 ..................................... ACCCAGGCGTTGGCGCTGTTTTTCGTCTCAAAGAGG 27499 37 100.0 34 ..................................... TTTTTATCGAAGCAACCGTGATAGATCGCGTTGG 27570 37 100.0 35 ..................................... CAGGATGCCCTTGCAGCGATTGAGGCGGAACAGAA 27642 37 100.0 34 ..................................... TTGCTACCGCCTGGGCCTGAATCGCTACGATTGA 27713 37 100.0 36 ..................................... CGCCATCAAGGCAGACCATGACCGACCAAACCAATC 27786 37 100.0 36 ..................................... AATTCACCCGTAGTGGTCACATCATTGTGCTGCGTG 27859 37 100.0 35 ..................................... AAGGATAAGCAAGTTTGGCTTGCGACTTGGAAGGA 27931 37 100.0 35 ..................................... GCCTGCAATTCTCCACAAAACAGGCTACTTTCCCG 28003 37 100.0 34 ..................................... ATCTCTGTAGTAATCTCTGTATATATAGACGAGT 28074 37 100.0 38 ..................................... ACGCAACATCGAGGATCACCGCCCTGTCCCCCTTGGGA 28149 37 100.0 38 ..................................... TGGCCATCGATAACCGCATTGGCGACATCAGCCGCCGC 28224 37 100.0 35 ..................................... CAGGTCAAAGGCTTTCTGGTGGGTATCTCGCTTGA 28296 37 100.0 36 ..................................... TTTTTCTTTTGCGTTGTGATTTCTTGAACATAATCA 28369 37 100.0 33 ..................................... CCGTCCTGGCGATGGTTTCGGCGCGACGTTCCG 28439 37 100.0 35 ..................................... ATCACGGGGATTGATGATGAAACCTTGCGAATCGG 28511 37 100.0 34 ..................................... CAATTTTTCTTTATCCCACCGCTGAATCGCACTG 28582 37 100.0 34 ..................................... GAAGATTTGCCGCAGCAGTTGGCGAAAGCTAGGG 28653 37 100.0 34 ..................................... ATTAGCGGCGACTACGTTTGCGAGACGGAGACCA 28724 37 100.0 33 ..................................... TTAAGCCTTGAGAAACAATTAGGACAGTTACGC 28794 37 100.0 37 ..................................... TGCCACAAGCTACCAGCGGCGACCAGGGAAAATGCTT 28868 37 97.3 36 ......................T.............. AGATGATTTAATCAAACATCGATGAGAGAAGGGCAT 28941 37 97.3 39 ......................T.............. GCAGCCCTCGCAAGTCGGTGGACAATCAGCGACGAAGTG 29017 37 97.3 37 ......................T.............. ACTAGACCCTATTCTCCAAACCTTACGGAGCGTCCCA 29091 37 97.3 37 ......................T.............. AGGACGATAGCGATGGCCCCAATGCAGACCCCAATGA 29165 37 97.3 37 ......................T.............. TATGAGGTGGCCTGCGATTTGCTCTACTGCCTCGATG 29239 37 97.3 37 ......................T.............. CAGATCGCAGTCAGCAAAACAGCCAAACTTCTCAGGG 29313 37 97.3 40 ......................T.............. GTTAAATTCTCCAATCCGAGAACGCTGGCAACGCCATCAT 29390 37 97.3 37 ......................T.............. AAGTCCCGATAACAGTCAACTCTATAAGCAAATCTAG 29464 37 97.3 34 ......................T.............. GCAAGTGATATGCACCACCTCCTTCATCTTACTG 29535 37 97.3 37 ......................T.............. ATGAGCCCAACATGAAACCATTTCACTCCCCTGCCTA 29609 37 97.3 35 ......................T.............. AAATCACGAATTACCCCCTTGTAAGCCTTGTCGTT 29681 37 97.3 36 ......................T.............. CACTCAAATTGCACCCTCTGAAATTAATCGAAACGG 29754 37 97.3 36 ......................T.............. TTTCTCCCCTTGGCGCTCTAATTTGGCCCATGGCGA 29827 37 97.3 38 ......................T.............. AGGGCATCGCCTTTTCTATTAGGACTATGAATAAAAAA 29902 37 97.3 35 ......................T.............. GCTGCAATGATGGCGGAGATTAACAAAAAGGCAAA 29974 37 97.3 36 ......................T.............. AATTGGTACTTCGGATCGCATCAAAGTTGTTCCCGC 30047 37 97.3 42 ......................T.............. TTCAATCACGGCGGCAGGAGCCGACCTTGGTGACCTCGCCGA 30126 37 97.3 34 ......................T.............. AAGAAAAAATGGGGGCTTTGATTTTTGTGGCAGA 30197 37 97.3 34 ......................T.............. AAGACCCACGGACGGGGATATCTTGGGTGGGCTG 30268 37 97.3 36 ......................T.............. TTGGCTTCCGCGTTGCTCACGTTTGCTTCAGTGGCG 30341 37 97.3 0 ....................A................ | ========== ====== ====== ====== ===================================== ========================================== ================== 41 37 98.6 36 CTTTCCAACCACTAAATCCCGACTACGGGACTGAAAC # Left flank : ACTCTCTTTTACCTGATCATTTACGATTTACCTTCTACAAAGGCAGGGGATAAGCGCCGAAAACGCTTGTTTGATTTATTATCGGGTTATGGCACTTGGAAACAATTTAGTGTTTTTGAATGTTTTCTGACGACAAAGCAATTTGCAAAATTACAAACTTCGATAGAAAAATTGATCAAACCAGATGAAGATGCTGTCTGTATCTATATCCTTGATGCCACTGCTGTTAAAAAGGCGATCGCCTACGGTACATCTACACCAGAAAAACCAGGTAGCATCATTCTTTAGATTTGACCTAAAATCAAGTTGGCAAACCCATAGCGTGACCAAAAACCCTAGGGACTTCGCCAAAATCTCTAGAACCTTGAAAATTCAATACTTTTCGATACTTGAAGGTCAACAACTTGCGTGGCGATCGTTGGTAAAATCAGATTCATGGGGATACATCTGCCAAATAAGCTTCGCAAAGCTAGGTATCGTCAGGTTTCTGGATCGCGGGC # Right flank : CATTTGTCCACGTGGCAATGTATGGCGATAGTTACCACTTTATTAACCTGGACAACAGCCCTGGAAGTTGTTATTAAATACTCTCATTTTGAGAGTATTCGGTTACTATTGGGGAAAAGGACTATATGCACTTAATCAGCATCAGCAAACTAAGGCAAGATGCAGCCAAATACTCTGATAGTAAATCAGCCCTAGATGCTTGGTATGCAGTGATCAAGCAGGCCCAATGGCAAAATCTAGAAGAGGTTCGGAAAACCTATCGAGACGCGGAGGCCGTCGGAAATTTTACTGTATTTAACATCAAGGGGAATAAATATCGCTTAATCGTTGGCATCGACTACCCATCTCAAACCGTTTACTACAAATATTTTTTGACCCACGCTGAGTACGACAAGGACACTTGGAAAAATGACCCCTACTTTAGATAAACAAAACTATGCCCAACTTCTAATGGATGCTATGCCCAAGGTCATCGAGACTGAAGCTGAGTATGAGCAGAC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAACCACTAAATCCCGACTACGGGACTGAAAC # Alternate repeat : CTTTCCAACCACTAAATCCCGATTACGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 80591-78364 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXWN01000002.1 Synechococcus sp. 7002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 80590 36 97.2 44 T................................... AAGCAGAGACAGGGATTGAGAGAACACCAGCAAACTCCTTATTG 80510 36 100.0 37 .................................... TTAGAGGGCTTCTCTTGAGCTTTGTTGGCGAGTAACA 80437 36 100.0 38 .................................... ATAAGGATCTATTAAAAGCAAATCAACATCTATTTTAA 80363 36 100.0 35 .................................... TGGTTTACTGCTGAGTTCTTGGTGACTTACACCAA 80292 36 100.0 43 .................................... ATGAGTGCTATGGGTTATCGATCCTATGATCAGCTATTGAACC 80213 36 100.0 35 .................................... TTTATTGTTAAAGCGTTGAGCTTCCTCAACAAGTT 80142 36 100.0 37 .................................... GGTGAAGGAGAAAAACTTCCCTGAGTTTAGTAAGGAG 80069 36 100.0 41 .................................... TACTGCAGAAGTCCGCTTTGGACCCGATGACTATCAAAAGA 79992 36 100.0 38 .................................... CAGAGATTGTAGATCATATAGACTTTCTATGGAACTAT 79918 36 100.0 42 .................................... ACAAGAAATGGCTGAATATCTTGATGAATTACTTTCTGTTAA 79840 36 100.0 40 .................................... TTGTAAAGATGACCCTACGGTTAAAGAATTTTCTAGAATC 79764 36 100.0 42 .................................... TTTTTTCAGTCACAATCAGAAAAATTCTATAAAGAATTGAGT 79686 36 100.0 40 .................................... TGAGAGAAGAGAAAAAGTATGTTCACGCCTTTGTACAAGG 79610 36 100.0 40 .................................... GAAACAATATCAGAGTCAACTCCAATAGGACCACCAAAGA 79534 36 100.0 39 .................................... TTACGGGCACGCCTGTGGCAATTCACCTTTGACGAAGTG 79459 36 100.0 36 .................................... AGATTAGCTAGAACCTCACGCAAGGGACTAAAGTGG 79387 36 100.0 46 .................................... CACAGTTGCGTAAGCTCTTGGTGAGACAACTAAAGGCCCATGCCAA 79305 36 100.0 40 .................................... TTTGTTCACCATTGACGCAGTATTGCGTCTGGTAAACTTA 79229 36 100.0 40 .................................... AATAGCTAATGATAGGCAGGGTTGCGTCTGCCTTACCAAC 79153 36 100.0 39 .................................... TTCCACCCTGGTTGTTAAGGTAGGGAATCTTGTTTGGAG 79078 36 100.0 39 .................................... TTCCACCCTGGTTGTTAAGGTAGGGAATCTTGTTTGGAG 79003 36 100.0 39 .................................... CCGATAGAACCCGACAATCATTTCCGCGTCTTGTTCAAT 78928 36 100.0 41 .................................... TTCTACCTGAACTGGAGCACTATCTCAGTGAAGTCAAGGCA 78851 36 100.0 41 .................................... ACATGTTTGATCTAACTAATGGTTTAGTTGATGTCACTCTT 78774 36 100.0 39 .................................... TGCTAATCTAAAAGGGCTATCAATTGAGATAGCCCTTTT 78699 36 100.0 40 .................................... TCGTCAAGAAGATTGGAGACTGGGTTATTCTCCAAATCGA 78623 36 100.0 38 .................................... TTCGGCTAACATGTGAACTGGCAGGGCGTGAGCCCATA 78549 36 100.0 39 .................................... GTCTGAGTTGGATAAAGCTGATTGGGATATACAGAATCA 78474 36 100.0 39 .................................... TTAGCACTCTTCGTATTCCCTCTGAAGTTCGCAAGGTGG 78399 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 30 36 99.9 40 GTTTCCAATCTATTTGCTTCTCAGGTGAAGAGAAAC # Left flank : CCTAGGGAAAGGCTCCGGGGAAAACTATCAAAAGCCAATATCTAATGCAAAACCCCAAAACTCTAGCTAATCAGCAATAAAGCCGAATTCTGGGGGGACTAAAATTATTTTCTTTTTGTTGATTTGTGGTGCAAAACAATCTAAGGGGCGATCGCCTTTTGAATTTTGCCCCCAAGAACCATTCCAGCAGCCAAGCTTAGGGTTGGCGATCGCCTAATTTCCCAATGCTATAGACCATGGTCATGGCACACATGAGCGCCCAAGTACCATCGAAACCGACGTTAATCCGGTGGCGCAGTTCGGCTTGGGGTTGATTGGCCTCCACTGCCTTAACCAGTTCGACGTAATCGCGGTACGTCCAGTAGCAAAAAAAGAGTGTCAGCCCGAAGGAAGAAGCGGCAAAAAAACGAAAGAGATTTTTAATCATTGATTAATTTTGAATGGCTTTGCTGAAAAAAAATGGCGCGCCTAAAGATTAGTTGGCTACGCCATATCCATTA # Right flank : CGCTGGCCTTTCAAAGGCTTGTCCGGAGAGAACTCCAGCGAGCATTTGCGACCGATAGCAAAATTTTACCAGGCTCCAACAGAAAAGGCCAGAAAAAAATCCCTAAAACCCTTATCAGGTAAGCTTTCGAGCAATCACATGAAGTTAATACTGTTTCAGCCATTTTCTAGATCAGTCGCTAAATAATCGTTGACGAAGGTGGATCGCTCAGAGAAGGTGACCCCCAAATTTCCACCTGAGAGAGAGTATGACTCGAAATCGGATAAAACCGCAAACTGTCCCCTTGATCCTCTTTGTAATAACGCGAAAGTCGTTTTTTCAACTCTTTATACTTTTTGGGCGATAAATGACACTCAAACACAGAATATTGAACACGTACCCCATAACCTTCCATTAGATCCGCGATCTTTTTGCGACGCTTATCATCACTAATGTCATAGGCCACCAGATAAAACATCAGCGGATTTCGTAGGGAGCATAACCTAATACCGGACGGTAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAATCTATTTGCTTCTCAGGTGAAGAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 2371139-2370163 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXWN01000001.1 Synechococcus sp. 7002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2371138 36 97.2 37 A................................... AGACGAACTCTCCGTTCCCATCGCTGATTTGCAGGTT 2371065 36 100.0 35 .................................... ACGTAATCAACCTGGGGCGAATAATCTTTCATAGG 2370994 36 100.0 37 .................................... TGAGGCGTTGAATGTTGTTGTTGTTCTTTGATTAAAT 2370921 36 100.0 36 .................................... GGAGAATGGAGAAAGAGAACCACGCTTCACAGTTGA 2370849 36 100.0 35 .................................... TAATGGGCAAGCTCGTGGGTTTCTTCTTGCCAGGA 2370778 36 100.0 38 .................................... ATGGGGAGCTGCGGGGTATTTTTCACCCATTCCCAGAA 2370704 36 100.0 35 .................................... CAGAGGAACTTCCGGTGGATGTCCTTGCGGAGTAC 2370633 36 100.0 36 .................................... GGCGGCACTTGGAGCAGCTGTGGCAGTGACGGCAAA 2370561 36 100.0 36 .................................... AGTAAATCCTCGAACATTGGCTTAGTATTTGAGTGT 2370489 36 100.0 38 .................................... GCGACCAGGGTGCTGTAATCCGTTTCGTTTTTTAAGGT 2370415 36 100.0 36 .................................... ACTTTCGAGAGGGCGTTAGCAATACAGGTTCTTCAG 2370343 36 100.0 37 .................................... GACGATTGAGAGATAAATGGCTACGGAATTATGCCCA 2370270 36 100.0 36 .................................... GGCGGCTGTGTTGGCGTAGATCCAGAAAAACTTAAT 2370198 36 94.4 0 .......G............A............... | ========== ====== ====== ====== ==================================== ====================================== ================== 14 36 99.4 36 GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC # Left flank : AAAAGCGTTGGCGTAAAGCTTATAAGCTCCTCGAAGGCTATGGGGAACGCATCCAATATTCGATTTTCCGCTGTTGGTTGACTCAGCGATCGCGAGAAAAGTTACGCTGGCAATTAGAGGAGGTGCTCACCAAGGAGGATGATCTTTTACTTATTCGCTTGTCACAACAATGTGTACAGGATTTACCCAAATATAACCGTCCGAATACTTGGCTCTTTGATGAACAGACATTTAAGGTACTCTGAAATGTTGCAAGCAATGGGGACTGTTTGGGGCGATCGCCTTTTTAAAATCGCTCAAAGAATTGGCTACTGGGCTTTTGCAATTTATCAGCAGCGGCTTAGATCCCTGTTTTTTCTGAAAACGCCTACCCTATCTAGGTTTCAGGAACATCCAATCAAGCTAAATTTTCTTCAAAGAGCCTCAGCTTGCTATGATTCACTAGGAACCTTGCAAAAGTTACCCAGAAGTCTTGCTCAGACTAAATTCTAGGACGCGCT # Right flank : TTTAGGGCGTCTAAATCCCGGTTTATCGTTTCAATATTCATGGCTTTTCTGGCCTATATTTGGCCTAAGCCTTACGAGGGGACAGGCATCCCAGGCCACCATGAAAAAGTAAGCAAATTTTCCTTACGCTACCGATAGCGCAATGGAAATTTGACCTACACTGTAAATATGGCTCGAGGCAGATTTGAACTGCCGACCTTGGGCTTATGAGTCCCCTGCTCTAACCAACTGAGCTACCGAGCCAAAACCGTAAACGATTATAACTATAGCAACTGCTTGTGTCAAGGGCTTGGTTTAGGGTCATTGTAAATGTCCAAACTTGAGTACAAAACAAGACTAGCCGCTGCCCACATTAACCATGTCTAAATTGCCCAAAATTGACCGACAGCGGGAACACCAAGCCAACGAACGTACCTTTCTGGCCTGGTTGCGCACCTCAATCGCCCTAATTGGCTTCGGCTTTGCGATCGCCCGTTTTGGTTTTTTTGTGCGTCAAATTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //