Array 1 5886-7239 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRIR010000002.1 Streptococcus equi subsp. zooepidemicus strain SEZ_19-059 tig00000004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 5886 26 100.0 42 .......................... ATAGCCTAGAATATTATCACACCAATCCATAGGCATGTCTCG 5954 26 100.0 42 .......................... ACCGTAATTAAAAAGATCATCAATACTTCTAAAAACGTCTCG 6022 26 100.0 42 .......................... ATTTTTATCCCTTTTCCTTTGTACTACGTTAATCATGTCTCG 6090 26 100.0 40 .......................... ATTGTATACCTTATATCCTATTTTCAATATTTTTGTCTCG 6156 26 100.0 40 .......................... ACACCTGGTCTAAGAGGTCGAGGTGGCGGTGGTTGTCTCG 6222 26 100.0 39 .......................... TTTTGTCCATTTTGACAGATCCGAAGAAATATTGTCTCG 6287 26 100.0 40 .......................... TGCTCCTTTAATTGCTGAAGAGACAGCTCAGAACGTCTCG 6353 26 100.0 40 .......................... TGCATAGTAACGTACTCACCTGTTACAGGATTAAGTCTCG 6419 26 100.0 40 .......................... CCATTGATCAGCAAACTATAAAATTGCTTAGAGCGTCTCG 6485 26 100.0 41 .......................... CCTGAAATATATAAGACCACTGAGAGAGTCTATAAGTCTCG 6552 26 100.0 39 .......................... TAAATCGTACTCCGGGAAAAATTTTTGTTGCAAGTCTCG 6617 26 100.0 40 .......................... TATTTACAACCAACTAGAACAACCTAGACAAGAAGTCTCG 6683 26 100.0 40 .......................... AATTATGCGAGGAGACCAACAAGAAAAAACGCTTGTCTCG 6749 26 100.0 39 .......................... CACATGGTGTTAAGCATCTATTAGATAATCCTGGTCTCG 6814 26 100.0 40 .......................... AATACAAGGTCAGATAGACAGTTTGACCAAATACGTCTCG 6880 26 100.0 41 .......................... TGTATTTATGATATATACTGTTCAGGATTTGATGGGTCTCG 6947 26 100.0 43 .......................... ATTCCCGGCGGCTTTAGATAGGTGAATAGGGGGCGAGGTCTCG 7016 26 100.0 39 .......................... ATTATCTTGTTTAACCTGTTCTAAAACTCTTAGGTCTCG 7081 26 100.0 39 .......................... ATTATCTTGTTTAACCTGTTCTAAAACTCTTAGGTCTCG 7146 26 100.0 42 .......................... GGATAGAAAATTATCTATAAACAAACATTTACAAGCGTCTCG 7214 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =========================================== ================== 21 26 100.0 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : TATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACGGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGGGTCACTCATAAAATGCTGTGAGACTCGCGCTAAAATAAGCTAAAAAATAGAGAAATGGGAGGTTATAGCTAAATATGTTATTAGCTAGCCTGTATCATTTCTCTATAAACTGTGCTATACTGCGCAGTCTCG # Right flank : TTTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTTGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGCTTTTTATGGTACTATGGGGGGGGTTCAATTGACATAGTACCATAAAAAGCTTTAAATCAACTTGATTAATGTGATATGATTTATCCCTTCATGAAAAGTACCAGGGATACGGACCACGCCCTCGAGAAGAGAGCAACTTCAATCAGTGTCACTCCTTGCATAGCAGCAAAATTTCAATCCACTCGCCCGTATGGGGCGAGACGCTTGTAAATGTTTGTTTATAGATAATTTTCTATCCATTTCAATCCACTCGCCCGTATGGGGCGAGACCTAAGAGTTTTAGAACAGGTTAAACAAGATAATATTTCAATCCACTCGCCCGTATGGGGCGAGACCTAAGAGTTTTAGAACAGGTTAAACAAGATAATATTTCAATCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 8885-7531 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRIR010000002.1 Streptococcus equi subsp. zooepidemicus strain SEZ_19-059 tig00000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 8884 26 100.0 42 .......................... ATAGCCTAGAATATTATCACACCAATCCATAGGCATGTCTCG 8816 26 100.0 42 .......................... ACCGTAATTAAAAAGATCATCAATACTTCTAAAAACGTCTCG 8748 26 100.0 42 .......................... ATTTTTATCCCTTTTCCTTTGTACTACGTTAATCATGTCTCG 8680 26 100.0 40 .......................... ATTGTATACCTTATATCCTATTTTCAATATTTTTGTCTCG 8614 26 100.0 40 .......................... ACACCTGGTCTAAGAGGTCGAGGTGGCGGTGGTTGTCTCG 8548 26 100.0 39 .......................... TTTTGTCCATTTTGACAGATCCGAAGAAATATTGTCTCG 8483 26 100.0 40 .......................... TGCTCCTTTAATTGCTGAAGAGACAGCTCAGAACGTCTCG 8417 26 100.0 40 .......................... TGCATAGTAACGTACTCACCTGTTACAGGATTAAGTCTCG 8351 26 100.0 40 .......................... CCATTGATCAGCAAACTATAAAATTGCTTAGAGCGTCTCG 8285 26 100.0 41 .......................... CCTGAAATATATAAGACCACTGAGAGAGTCTATAAGTCTCG 8218 26 100.0 39 .......................... TAAATCGTACTCCGGGAAAAATTTTTGTTGCAAGTCTCG 8153 26 100.0 40 .......................... TATTTACAACCAACTAGAACAACCTAGACAAGAAGTCTCG 8087 26 100.0 40 .......................... AATTATGCGAGGAGACCAACAAGAAAAAACGCTTGTCTCG 8021 26 100.0 39 .......................... CACATGGTGTTAAGCATCTATTAGATAATCCTGGTCTCG 7956 26 100.0 40 .......................... AATACAAGGTCAGATAGACAGTTTGACCAAATACGTCTCG 7890 26 100.0 41 .......................... TGTATTTATGATATATACTGTTCAGGATTTGATGGGTCTCG 7823 26 100.0 43 .......................... ATTCCCGGCGGCTTTAGATAGGTGAATAGGGGGCGAGGTCTCG 7754 26 100.0 39 .......................... ATTATCTTGTTTAACCTGTTCTAAAACTCTTAGGTCTCG 7689 26 100.0 39 .......................... ATTATCTTGTTTAACCTGTTCTAAAACTCTTAGGTCTCG 7624 26 100.0 42 .......................... GGATAGAAAATTATCTATAAACAAACATTTACAAGCGTCTCG 7556 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =========================================== ================== 21 26 100.0 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : TATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACGGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGGGTCACTCATAAAATGCTGTGAGACTCGCGCTAAAATAAGCTAAAAAATAGAGAAATGGGAGGTTATAGCTAAATATGTTATTAGCTAGCCTGTATCATTTCTCTATAAACTGTGCTATACTGCGCAGTCTCG # Right flank : TTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTTGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAAGCTTTTTATGGTACTATGTCAATTGAACCCCCCCCATAGTACCATAAAAAGCTTAAATCAACTTGATTAATGTGATATGATTTATCCCTTCATGAAAAGTACCAGGGATACGGACCACGCCCTCGAGAAGAGAGCAACTTCAATCAGTGTCACTCCTTGCATAGCAGCAAAATTTCAATCCACTCGCCCGTATGGGGCGAGACGCTTGTAAATGTTTGTTTATAGATAATTTTCTATCCATTTCAATCCACTCGCCCGTATGGGGCGAGACCTAAGAGTTTTAGAACAGGTTAAACAAGATAATATTTCAATCCACTCGCCCGTATGGGGCGAGACCTAAGAGTTTTAGAACAGGTTAAACAAGATAATATTTCAATCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 657435-658788 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRIR010000001.1 Streptococcus equi subsp. zooepidemicus strain SEZ_19-059 tig00000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 657435 26 100.0 42 .......................... ATAGCCTAGAATATTATCACACCAATCCATAGGCATGTCTCG 657503 26 100.0 42 .......................... ACCGTAATTAAAAAGATCATCAATACTTCTAAAAACGTCTCG 657571 26 100.0 42 .......................... ATTTTTATCCCTTTTCCTTTGTACTACGTTAATCATGTCTCG 657639 26 100.0 40 .......................... ATTGTATACCTTATATCCTATTTTCAATATTTTTGTCTCG 657705 26 100.0 40 .......................... ACACCTGGTCTAAGAGGTCGAGGTGGCGGTGGTTGTCTCG 657771 26 100.0 39 .......................... TTTTGTCCATTTTGACAGATCCGAAGAAATATTGTCTCG 657836 26 100.0 40 .......................... TGCTCCTTTAATTGCTGAAGAGACAGCTCAGAACGTCTCG 657902 26 100.0 40 .......................... TGCATAGTAACGTACTCACCTGTTACAGGATTAAGTCTCG 657968 26 100.0 40 .......................... CCATTGATCAGCAAACTATAAAATTGCTTAGAGCGTCTCG 658034 26 100.0 41 .......................... CCTGAAATATATAAGACCACTGAGAGAGTCTATAAGTCTCG 658101 26 100.0 39 .......................... TAAATCGTACTCCGGGAAAAATTTTTGTTGCAAGTCTCG 658166 26 100.0 40 .......................... TATTTACAACCAACTAGAACAACCTAGACAAGAAGTCTCG 658232 26 100.0 40 .......................... AATTATGCGAGGAGACCAACAAGAAAAAACGCTTGTCTCG 658298 26 100.0 39 .......................... CACATGGTGTTAAGCATCTATTAGATAATCCTGGTCTCG 658363 26 100.0 40 .......................... AATACAAGGTCAGATAGACAGTTTGACCAAATACGTCTCG 658429 26 100.0 41 .......................... TGTATTTATGATATATACTGTTCAGGATTTGATGGGTCTCG 658496 26 100.0 43 .......................... ATTCCCGGCGGCTTTAGATAGGTGAATAGGGGGCGAGGTCTCG 658565 26 100.0 39 .......................... ATTATCTTGTTTAACCTGTTCTAAAACTCTTAGGTCTCG 658630 26 100.0 39 .......................... ATTATCTTGTTTAACCTGTTCTAAAACTCTTAGGTCTCG 658695 26 100.0 42 .......................... GGATAGAAAATTATCTATAAACAAACATTTACAAGCGTCTCG 658763 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =========================================== ================== 21 26 100.0 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : TATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACGGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGGGTCACTCATAAAATGCTGTGAGACTCGCGCTAAAATAAGCTAAAAAATAGAGAAATGGGAGGTTATAGCTAAATATGTTATTAGCTAGCCTGTATCATTTCTCTATAAACTGTGCTATACTGCGCAGTCTCG # Right flank : TTTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTTGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGCTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGTCTTCTCTTTTGTCATGTTCAAAGCAAGCATAGATAAGTTTCTTGAAATTGTCAAAATTTATGTACCTAAAAGCATTGCATTTGATGCCTTTGATAAATTTGTTAGTCGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATTAAGGTGTTCAAAGCTGTTTTGAAGGGGTGATTGAGATGAGGCATAACTCAAAGAAGAGCTCTGTATTCTTTTCTTGCAAATGAAAAAGAGGCAGCTGATAAAGGTCATAATAGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //