Array 1 258103-255204 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCK01000001.1 Salmonella enterica subsp. enterica serovar Albany strain 06-0796 NODE_1_length_320700_cov_4.35489, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 258102 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 258041 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 257980 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 257919 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 257858 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 257797 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 257736 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 257675 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 257614 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 257553 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 257492 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 257431 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 257370 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 257309 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 257248 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 257187 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 257126 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 257065 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 257004 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 256943 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 256882 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 256821 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 256760 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 256699 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 256638 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 256577 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 256516 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 256455 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 256394 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 256333 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 256272 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 256211 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 256150 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 256088 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 256027 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 255966 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 255905 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 255844 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 255783 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 255722 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 255661 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 255599 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 255538 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 255477 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 255416 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 255355 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 255294 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 255233 29 100.0 0 ............................. | A [255206] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 276640-274660 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCK01000001.1 Salmonella enterica subsp. enterica serovar Albany strain 06-0796 NODE_1_length_320700_cov_4.35489, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 276639 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 276578 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 276517 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 276456 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 276395 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 276334 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 276273 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 276212 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 276151 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 276090 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 276029 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 275968 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 275907 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 275846 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 275785 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 275724 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 275663 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 275602 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 275541 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 275480 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 275419 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 275358 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 275297 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 275236 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 275175 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 275114 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 275053 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 274992 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 274931 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 274870 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 274809 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 274748 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 274687 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //